Wall clock time and date at job start Tue Mar 31 2020 12:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99547 * 2 1 4 4 C 1.53000 * 109.46831 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.47251 * 65.04362 * 4 3 2 6 6 C 1.46895 * 110.99471 * 72.60460 * 5 4 3 7 7 C 1.50696 * 109.47435 * 64.45788 * 6 5 4 8 8 H 1.07999 * 119.99979 * 4.60424 * 7 6 5 9 9 C 1.37886 * 120.00184 * 184.60210 * 7 6 5 10 10 N 1.31514 * 119.99921 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00084 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46810 * 90.00067 * 11 9 7 13 13 H 1.48496 * 109.47121 * 209.99955 * 11 9 7 14 14 H 1.48501 * 109.47209 * 330.00422 * 11 9 7 15 15 C 1.38559 * 110.99910 * 196.55672 * 5 4 3 16 16 N 1.31227 * 126.38234 * 339.96775 * 15 5 4 17 17 N 1.28502 * 110.10767 * 179.97438 * 16 15 5 18 18 C 1.31246 * 109.95856 * 0.02562 * 17 16 15 19 19 C 1.47920 * 126.47147 * 179.97438 * 18 17 16 20 20 C 1.36031 * 127.13518 * 165.00296 * 19 18 17 21 21 O 1.34090 * 108.42011 * 180.28051 * 20 19 18 22 22 C 1.34173 * 110.77849 * 359.55352 * 21 20 19 23 23 C 1.50700 * 125.47074 * 180.15209 * 22 21 20 24 24 C 1.34321 * 109.05118 * 0.44542 * 22 21 20 25 25 N 1.36643 * 126.37435 * 160.23489 * 15 5 4 26 26 C 1.46500 * 127.17881 * 0.02562 * 25 15 5 27 27 H 1.08998 * 109.47504 * 300.00488 * 1 2 3 28 28 H 1.09007 * 109.47164 * 60.00329 * 1 2 3 29 29 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47420 * 59.99784 * 3 2 1 31 31 H 1.08999 * 109.47357 * 299.99243 * 3 2 1 32 32 H 1.09002 * 109.47049 * 305.04611 * 4 3 2 33 33 H 1.08997 * 109.47309 * 185.04737 * 4 3 2 34 34 H 1.09005 * 109.46776 * 184.45570 * 6 5 4 35 35 H 1.09002 * 109.47393 * 304.45183 * 6 5 4 36 36 H 0.97000 * 120.00431 * 179.97438 * 10 9 7 37 37 H 1.07997 * 125.79274 * 0.02562 * 20 19 18 38 38 H 1.09005 * 109.46608 * 270.34498 * 23 22 21 39 39 H 1.08990 * 109.47516 * 30.34368 * 23 22 21 40 40 H 1.09003 * 109.46778 * 150.34854 * 23 22 21 41 41 H 1.08000 * 126.98623 * 179.71125 * 24 22 21 42 42 H 1.08999 * 109.46762 * 264.37416 * 26 25 15 43 43 H 1.09001 * 109.47280 * 24.37801 * 26 25 15 44 44 H 1.09004 * 109.46733 * 144.37746 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5633 -1.2548 6 6 3.8405 1.4964 -2.3810 7 6 4.7645 2.6693 -2.1772 8 1 5.4446 2.6816 -1.3384 9 6 4.7417 3.7267 -3.0618 10 7 3.9139 3.7115 -4.0837 11 14 5.8865 5.1809 -2.8089 12 1 7.1652 4.9342 -3.5225 13 1 5.2500 6.4110 -3.3445 14 1 6.1545 5.3535 -1.3585 15 6 5.2801 0.1018 -1.1483 16 7 6.1723 0.4856 -0.2659 17 7 7.2765 -0.1449 -0.4512 18 6 7.1566 -0.9701 -1.4646 19 6 8.2035 -1.8719 -1.9928 20 6 8.0317 -2.9217 -2.8407 21 8 9.2284 -3.4819 -3.0693 22 6 10.1942 -2.8290 -2.4052 23 6 11.6604 -3.1765 -2.4292 24 6 9.6435 -1.8199 -1.7105 25 7 5.8759 -0.8342 -1.9459 26 6 5.2745 -1.5463 -3.0762 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8506 0.5679 0.8422 33 1 3.9783 2.1765 0.0911 34 1 4.0998 0.9865 -3.3089 35 1 2.8110 1.8501 -2.4362 36 1 3.8976 4.4555 -4.7058 37 1 7.0906 -3.2509 -3.2559 38 1 11.8784 -3.8871 -1.6319 39 1 11.9127 -3.6216 -3.3915 40 1 12.2506 -2.2721 -2.2812 41 1 10.1557 -1.1141 -1.0733 42 1 4.8977 -2.5116 -2.7384 43 1 4.4520 -0.9566 -3.4811 44 1 6.0266 -1.7003 -3.8501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647679333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:43 Heat of formation + Delta-G solvation = 62.837347 kcal Electronic energy + Delta-G solvation = -27397.994966 eV Core-core repulsion = 23547.522345 eV Total energy + Delta-G solvation = -3850.472621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.53185 -42.01229 -37.93573 -36.38232 -34.55326 -33.24649 -32.64961 -32.17197 -29.67687 -28.56625 -27.37116 -26.74362 -26.36337 -25.70817 -23.48912 -22.57126 -21.83270 -20.84851 -19.59119 -19.53280 -17.26773 -16.92351 -16.32845 -16.16880 -16.07412 -15.79466 -15.59372 -14.96049 -14.84270 -14.48100 -14.37718 -13.59487 -13.32470 -13.29981 -13.16749 -12.97148 -12.84911 -12.80336 -12.41174 -12.17714 -11.85384 -11.70079 -11.42583 -11.13377 -11.00315 -10.94111 -10.61954 -10.45376 -10.29248 -10.20359 -9.99261 -9.68809 -9.46677 -9.22553 -8.81639 -8.56316 -8.31312 -7.33724 -6.18307 -4.25930 1.46269 2.05469 2.68108 2.88364 3.01148 3.25197 3.31549 3.39026 3.70183 4.21718 4.35024 4.43219 4.55783 4.62437 4.87780 5.01117 5.15577 5.20628 5.28555 5.34467 5.40221 5.45003 5.52635 5.56188 5.67773 5.70196 5.72582 5.76862 5.84789 5.89486 5.94551 6.02870 6.19576 6.38569 6.42118 6.58205 6.65808 6.92061 7.08983 7.20899 7.23342 7.46762 7.65915 7.78465 7.98561 8.12607 8.84507 9.40891 9.43645 10.88021 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.004332 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.142966 B = 6462.457345 C = 8152.897402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.068 3.932 4 C 0.080 3.920 5 N -0.460 5.460 6 C 0.191 3.809 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.070 3.930 10 N -0.891 5.891 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.419 3.581 16 N -0.328 5.328 17 N -0.267 5.267 18 C 0.213 3.787 19 C -0.085 4.085 20 C -0.027 4.027 21 O -0.177 6.177 22 C -0.015 4.015 23 C -0.071 4.071 24 C -0.172 4.172 25 N -0.475 5.475 26 C 0.077 3.923 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.053 0.947 36 H 0.264 0.736 37 H 0.205 0.795 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.158 0.842 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -13.356 1.678 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.009 4.009 4 C -0.048 4.048 5 N -0.184 5.184 6 C 0.067 3.933 7 C -0.595 4.595 8 H 0.090 0.910 9 C -0.133 4.133 10 N -0.529 5.529 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.194 1.194 15 C 0.064 3.936 16 N -0.173 5.173 17 N -0.109 5.109 18 C -0.051 4.051 19 C -0.089 4.089 20 C -0.098 4.098 21 O -0.074 6.074 22 C -0.064 4.064 23 C -0.127 4.127 24 C -0.193 4.193 25 N -0.170 5.170 26 C -0.066 4.066 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.222 0.778 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.176 0.824 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.907 -13.287 2.397 14.056 hybrid contribution -0.094 1.321 -1.041 1.685 sum 3.813 -11.966 1.356 12.632 Atomic orbital electron populations 1.22654 0.82419 1.01898 0.99510 1.87965 1.18367 1.28320 1.95295 1.22655 0.93541 0.84362 1.00367 1.21934 0.92416 1.00538 0.89883 1.59295 1.10926 1.39922 1.08287 1.20011 0.98775 0.88437 0.86082 1.21844 1.21694 1.03689 1.12282 0.90991 1.24902 0.95330 0.98298 0.94773 1.69929 1.36673 1.32197 1.14115 0.86570 0.80861 0.81693 0.78949 1.20640 1.21054 1.19432 1.22467 0.91866 0.89672 0.89631 1.74606 0.96103 1.21506 1.25122 1.74153 1.17243 1.06155 1.13345 1.21285 0.83787 1.02726 0.97299 1.18696 0.91601 0.96639 1.01943 1.24091 0.87769 0.95824 1.02081 1.83803 1.15112 1.50155 1.58320 1.22256 0.91328 0.95093 0.97761 1.20295 0.85584 1.03315 1.03554 1.22463 0.91445 1.01158 1.04188 1.45877 1.11222 1.32880 1.27030 1.22102 1.00068 0.97513 0.86910 0.94805 0.94309 0.90375 0.93192 0.92104 0.90865 0.89793 0.95255 0.92909 0.92642 0.77807 0.90104 0.90585 0.89240 0.82388 0.90613 0.87997 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.53 10.65 -35.23 -0.38 -6.91 16 3 C 0.07 1.17 6.10 37.16 0.23 1.40 16 4 C 0.08 1.60 4.70 -3.82 -0.02 1.58 16 5 N -0.46 -9.96 4.61 -175.82 -0.81 -10.77 16 6 C 0.19 4.63 4.87 -4.98 -0.02 4.61 16 7 C -0.56 -15.06 7.51 -34.44 -0.26 -15.32 16 8 H 0.07 2.05 6.32 -52.49 -0.33 1.72 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 11 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.42 9.34 5.78 -318.63 -1.84 7.50 16 16 N -0.33 -7.83 10.81 30.35 0.33 -7.50 16 17 N -0.27 -6.07 12.22 32.59 0.40 -5.67 16 18 C 0.21 4.22 7.97 -153.82 -1.23 3.00 16 19 C -0.08 -1.37 6.29 -103.25 -0.65 -2.02 16 20 C -0.03 -0.35 10.96 29.94 0.33 -0.02 16 21 O -0.18 -2.23 10.55 6.63 0.07 -2.16 16 22 C -0.02 -0.18 7.29 -35.69 -0.26 -0.44 16 23 C -0.07 -0.53 10.41 36.01 0.37 -0.16 16 24 C -0.17 -2.46 11.03 -37.49 -0.41 -2.88 16 25 N -0.48 -9.24 3.24 -122.00 -0.39 -9.64 16 26 C 0.08 1.12 9.85 59.85 0.59 1.71 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.12 6.55 -51.93 -0.34 0.78 16 32 H 0.07 1.46 7.82 -51.93 -0.41 1.05 16 33 H 0.08 1.83 6.58 -51.93 -0.34 1.49 16 34 H 0.03 0.75 6.62 -51.93 -0.34 0.41 16 35 H 0.05 1.33 6.50 -51.93 -0.34 0.99 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.21 1.97 6.26 -52.49 -0.33 1.64 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.60 6.46 -51.93 -0.34 1.26 16 44 H 0.08 0.96 6.62 -51.93 -0.34 0.62 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -33.82 366.67 -7.75 -41.57 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.05 Total: 0.81 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.16 Total: 2.32 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.26 Total: -57.95 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.31 Total: -9.07 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.82 -7.75 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647679333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.405 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds