Wall clock time and date at job start Tue Mar 31 2020 12:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99547 * 2 1 4 4 C 1.53000 * 109.46831 * 179.97438 * 3 2 1 5 5 N 1.46908 * 109.47251 * 65.04362 * 4 3 2 6 6 C 1.46895 * 110.99471 * 72.60460 * 5 4 3 7 7 C 1.50696 * 109.47435 * 64.45788 * 6 5 4 8 8 H 1.07999 * 119.99979 * 4.60424 * 7 6 5 9 9 C 1.37886 * 120.00184 * 184.60210 * 7 6 5 10 10 N 1.31514 * 119.99921 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00084 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46810 * 90.00067 * 11 9 7 13 13 H 1.48496 * 109.47121 * 209.99955 * 11 9 7 14 14 H 1.48501 * 109.47209 * 330.00422 * 11 9 7 15 15 C 1.38559 * 110.99910 * 196.55672 * 5 4 3 16 16 N 1.31227 * 126.38234 * 339.96775 * 15 5 4 17 17 N 1.28502 * 110.10767 * 179.97438 * 16 15 5 18 18 C 1.31246 * 109.95856 * 0.02562 * 17 16 15 19 19 C 1.47920 * 126.47147 * 179.97438 * 18 17 16 20 20 C 1.36031 * 127.13518 * 165.00296 * 19 18 17 21 21 O 1.34090 * 108.42011 * 180.28051 * 20 19 18 22 22 C 1.34173 * 110.77849 * 359.55352 * 21 20 19 23 23 C 1.50700 * 125.47074 * 180.15209 * 22 21 20 24 24 C 1.34321 * 109.05118 * 0.44542 * 22 21 20 25 25 N 1.36643 * 126.37435 * 160.23489 * 15 5 4 26 26 C 1.46500 * 127.17881 * 0.02562 * 25 15 5 27 27 H 1.08998 * 109.47504 * 300.00488 * 1 2 3 28 28 H 1.09007 * 109.47164 * 60.00329 * 1 2 3 29 29 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47420 * 59.99784 * 3 2 1 31 31 H 1.08999 * 109.47357 * 299.99243 * 3 2 1 32 32 H 1.09002 * 109.47049 * 305.04611 * 4 3 2 33 33 H 1.08997 * 109.47309 * 185.04737 * 4 3 2 34 34 H 1.09005 * 109.46776 * 184.45570 * 6 5 4 35 35 H 1.09002 * 109.47393 * 304.45183 * 6 5 4 36 36 H 0.97000 * 120.00431 * 179.97438 * 10 9 7 37 37 H 1.07997 * 125.79274 * 0.02562 * 20 19 18 38 38 H 1.09005 * 109.46608 * 270.34498 * 23 22 21 39 39 H 1.08990 * 109.47516 * 30.34368 * 23 22 21 40 40 H 1.09003 * 109.46778 * 150.34854 * 23 22 21 41 41 H 1.08000 * 126.98623 * 179.71125 * 24 22 21 42 42 H 1.08999 * 109.46762 * 264.37416 * 26 25 15 43 43 H 1.09001 * 109.47280 * 24.37801 * 26 25 15 44 44 H 1.09004 * 109.46733 * 144.37746 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5633 -1.2548 6 6 3.8405 1.4964 -2.3810 7 6 4.7645 2.6693 -2.1772 8 1 5.4446 2.6816 -1.3384 9 6 4.7417 3.7267 -3.0618 10 7 3.9139 3.7115 -4.0837 11 14 5.8865 5.1809 -2.8089 12 1 7.1652 4.9342 -3.5225 13 1 5.2500 6.4110 -3.3445 14 1 6.1545 5.3535 -1.3585 15 6 5.2801 0.1018 -1.1483 16 7 6.1723 0.4856 -0.2659 17 7 7.2765 -0.1449 -0.4512 18 6 7.1566 -0.9701 -1.4646 19 6 8.2035 -1.8719 -1.9928 20 6 8.0317 -2.9217 -2.8407 21 8 9.2284 -3.4819 -3.0693 22 6 10.1942 -2.8290 -2.4052 23 6 11.6604 -3.1765 -2.4292 24 6 9.6435 -1.8199 -1.7105 25 7 5.8759 -0.8342 -1.9459 26 6 5.2745 -1.5463 -3.0762 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8506 0.5679 0.8422 33 1 3.9783 2.1765 0.0911 34 1 4.0998 0.9865 -3.3089 35 1 2.8110 1.8501 -2.4362 36 1 3.8976 4.4555 -4.7058 37 1 7.0906 -3.2509 -3.2559 38 1 11.8784 -3.8871 -1.6319 39 1 11.9127 -3.6216 -3.3915 40 1 12.2506 -2.2721 -2.2812 41 1 10.1557 -1.1141 -1.0733 42 1 4.8977 -2.5116 -2.7384 43 1 4.4520 -0.9566 -3.4811 44 1 6.0266 -1.7003 -3.8501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647679333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:42 Heat of formation + Delta-G solvation = 41.454856 kcal Electronic energy + Delta-G solvation = -27398.922181 eV Core-core repulsion = 23547.522345 eV Total energy + Delta-G solvation = -3851.399836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.87758 -43.29551 -39.43849 -37.88910 -36.01285 -34.78368 -34.27382 -33.14221 -31.10651 -30.27504 -28.81267 -28.05784 -27.52995 -26.97267 -25.19479 -24.07181 -23.33962 -22.08095 -21.14748 -20.75976 -18.91142 -18.32438 -17.80878 -17.63867 -17.35309 -17.12158 -17.00488 -16.63736 -16.15655 -15.97470 -15.62154 -15.23369 -14.78357 -14.38083 -14.22962 -14.02549 -13.98428 -13.85845 -13.71299 -13.54450 -13.25289 -13.15262 -12.85003 -12.70258 -12.67665 -12.51373 -12.46261 -12.17211 -11.99488 -11.81910 -11.54874 -11.39459 -10.99268 -10.70180 -10.49256 -10.17583 -9.59398 -8.97622 -8.28529 -6.42476 0.24345 0.92849 1.24600 1.28219 1.30939 1.42109 1.54167 1.93037 2.16660 2.31042 2.92726 2.99562 3.01122 3.26942 3.55541 3.75807 3.92137 4.10571 4.19550 4.25684 4.28854 4.39275 4.41476 4.49524 4.53564 4.59942 4.62977 4.64281 4.77870 4.78447 4.88489 4.89768 4.95774 4.99865 5.07221 5.11096 5.14425 5.20797 5.43397 5.59245 5.66443 5.79798 5.97987 6.06347 6.35520 6.41262 6.72326 7.27838 7.79392 8.75847 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.004332 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.142966 B = 6462.457345 C = 8152.897402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.079 3.921 4 C 0.082 3.918 5 N -0.449 5.449 6 C 0.210 3.790 7 C -0.562 4.562 8 H 0.052 0.948 9 C 0.031 3.969 10 N -0.913 5.913 11 Si 0.942 3.058 12 H -0.283 1.283 13 H -0.269 1.269 14 H -0.275 1.275 15 C 0.395 3.605 16 N -0.360 5.360 17 N -0.314 5.314 18 C 0.234 3.766 19 C -0.133 4.133 20 C 0.006 3.994 21 O -0.173 6.173 22 C 0.002 3.998 23 C -0.072 4.072 24 C -0.203 4.203 25 N -0.476 5.476 26 C 0.067 3.933 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.017 0.983 35 H 0.043 0.957 36 H 0.268 0.732 37 H 0.239 0.761 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.153 0.847 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -15.260 0.723 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.002 3.998 4 C -0.045 4.045 5 N -0.173 5.173 6 C 0.085 3.915 7 C -0.600 4.600 8 H 0.070 0.930 9 C -0.170 4.170 10 N -0.552 5.552 11 Si 0.769 3.231 12 H -0.210 1.210 13 H -0.194 1.194 14 H -0.200 1.200 15 C 0.038 3.962 16 N -0.204 5.204 17 N -0.155 5.155 18 C -0.032 4.032 19 C -0.137 4.137 20 C -0.065 4.065 21 O -0.069 6.069 22 C -0.047 4.047 23 C -0.128 4.128 24 C -0.223 4.223 25 N -0.170 5.170 26 C -0.074 4.074 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.171 0.829 42 H 0.129 0.871 43 H 0.106 0.894 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.419 -15.206 1.440 15.901 hybrid contribution -0.175 1.751 -0.772 1.922 sum 4.244 -13.455 0.669 14.124 Atomic orbital electron populations 1.22891 0.80034 1.03582 1.00480 1.87914 1.20941 1.27842 1.95482 1.22467 0.91533 0.84883 1.00919 1.21901 0.94431 0.98919 0.89258 1.59316 1.10945 1.39047 1.08028 1.19640 0.97310 0.87911 0.86657 1.21941 1.21718 1.04835 1.11556 0.92981 1.25495 0.96544 1.00306 0.94700 1.69984 1.37577 1.32986 1.14610 0.85790 0.79179 0.79822 0.78359 1.20968 1.19419 1.20031 1.22571 0.91996 0.90975 0.90709 1.74460 0.96894 1.22576 1.26493 1.74057 1.17295 1.08307 1.15797 1.21901 0.84257 1.01275 0.95742 1.18873 0.91666 0.98315 1.04882 1.24619 0.88859 0.93695 0.99352 1.83867 1.15158 1.49879 1.57987 1.22930 0.92762 0.93430 0.95601 1.20536 0.82466 1.04534 1.05220 1.22566 0.91083 1.02750 1.05886 1.46161 1.11012 1.32388 1.27462 1.22477 1.00378 0.98256 0.86265 0.92927 0.94190 0.88401 0.90503 0.93547 0.91084 0.92226 0.96517 0.93940 0.92280 0.74525 0.88260 0.88855 0.88068 0.82926 0.87059 0.89446 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -13.55 10.65 -148.98 -1.59 -15.13 16 3 C 0.08 2.75 6.10 71.98 0.44 3.19 16 4 C 0.08 3.43 4.70 86.30 0.41 3.84 16 5 N -0.45 -20.06 4.61 -710.18 -3.27 -23.33 16 6 C 0.21 10.51 4.87 85.56 0.42 10.92 16 7 C -0.56 -31.35 7.51 25.60 0.19 -31.16 16 8 H 0.05 3.10 6.32 -2.91 -0.02 3.08 16 9 C 0.03 1.71 5.46 84.66 0.46 2.17 16 10 N -0.91 -51.81 13.29 21.45 0.28 -51.53 16 11 Si 0.94 45.37 29.54 68.60 2.03 47.39 16 12 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 C 0.39 18.13 5.78 260.03 1.50 19.64 16 16 N -0.36 -17.96 10.81 -57.90 -0.63 -18.59 16 17 N -0.31 -14.83 12.22 -50.79 -0.62 -15.45 16 18 C 0.23 9.36 7.97 136.26 1.09 10.45 16 19 C -0.13 -4.17 6.29 -18.97 -0.12 -4.29 16 20 C 0.01 0.13 10.96 67.31 0.74 0.86 16 21 O -0.17 -3.78 10.55 0.81 0.01 -3.77 16 22 C 0.00 0.04 7.29 24.79 0.18 0.22 16 23 C -0.07 -0.83 10.41 71.24 0.74 -0.09 16 24 C -0.20 -5.66 11.03 23.63 0.26 -5.40 16 25 N -0.48 -18.55 3.24 -539.89 -1.75 -20.30 16 26 C 0.07 1.84 9.85 127.77 1.26 3.10 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.75 6.55 -2.39 -0.02 1.73 16 32 H 0.07 2.95 7.82 -2.39 -0.02 2.93 16 33 H 0.06 2.75 6.58 -2.39 -0.02 2.73 16 34 H 0.02 0.88 6.62 -2.38 -0.02 0.86 16 35 H 0.04 2.21 6.50 -2.39 -0.02 2.20 16 36 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.24 3.56 6.26 -2.91 -0.02 3.54 16 38 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 42 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.09 2.70 6.46 -2.39 -0.02 2.68 16 44 H 0.11 2.29 6.62 -2.38 -0.02 2.28 16 Total: -1.00 -76.03 366.67 4.30 -71.73 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.02 Total: 13.66 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 8.81 Total: 15.33 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -5.98 Total: -129.20 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.58 Total: -18.91 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.03 4.30 -71.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647679333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.181 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds