Wall clock time and date at job start Tue Mar 31 2020 12:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48502 * 109.46966 * 270.00092 * 3 2 1 5 5 H 1.48508 * 109.46820 * 29.99659 * 3 2 1 6 6 H 1.48496 * 109.47145 * 149.99728 * 3 2 1 7 7 C 1.37881 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99883 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00184 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.34959 * 125.97837 * 124.99872 * 10 9 7 12 12 C 1.35240 * 107.86241 * 179.74548 * 11 10 9 13 13 C 1.40409 * 107.86356 * 0.43059 * 12 11 10 14 14 N 1.40195 * 125.97007 * 179.82618 * 13 12 11 15 15 C 1.34771 * 120.00121 * 359.71566 * 14 13 12 16 16 O 1.21588 * 120.00398 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00233 * 179.97438 * 15 14 13 18 18 C 1.47026 * 125.64285 * 359.97438 * 17 15 14 19 19 C 1.54321 * 107.26791 * 181.07596 * 18 17 15 20 20 C 1.55448 * 102.96961 * 22.19024 * 19 18 17 21 21 O 1.42902 * 111.01110 * 82.52556 * 20 19 18 22 22 C 1.53000 * 111.11787 * 206.45980 * 20 19 18 23 23 C 1.52997 * 117.50101 * 242.30431 * 22 20 19 24 24 C 1.53001 * 117.49817 * 173.64166 * 22 20 19 25 25 C 1.47419 * 125.65139 * 179.97438 * 17 15 14 26 26 N 1.31205 * 108.05393 * 359.56431 * 13 12 11 27 27 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46869 * 60.00056 * 9 7 2 29 29 H 1.08997 * 109.46924 * 300.00186 * 9 7 2 30 30 H 1.08002 * 126.06855 * 0.02562 * 11 10 9 31 31 H 1.07996 * 126.07193 * 180.26016 * 12 11 10 32 32 H 0.97000 * 119.99440 * 179.71775 * 14 13 12 33 33 H 1.08998 * 109.88266 * 300.48971 * 18 17 15 34 34 H 1.09000 * 109.88221 * 61.65788 * 18 17 15 35 35 H 1.08998 * 110.71927 * 140.55469 * 19 18 17 36 36 H 1.08998 * 110.72073 * 263.64892 * 19 18 17 37 37 H 0.96704 * 114.00255 * 307.25620 * 21 20 19 38 38 H 1.09000 * 115.54688 * 27.97660 * 22 20 19 39 39 H 1.08996 * 117.49875 * 0.02562 * 23 22 20 40 40 H 1.09000 * 117.49759 * 145.02001 * 23 22 20 41 41 H 1.08995 * 117.49807 * 214.98121 * 24 22 20 42 42 H 1.08998 * 117.49564 * 359.97438 * 24 22 20 43 43 H 1.09002 * 110.36926 * 274.69484 * 25 17 15 44 44 H 1.08995 * 110.36556 * 36.90768 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0010 11 6 4.8551 -3.1139 -0.8934 12 6 5.0604 -4.4047 -0.5459 13 6 4.2937 -4.6693 0.6002 14 7 4.2221 -5.8943 1.2783 15 6 4.9273 -6.9530 0.8333 16 8 5.6262 -6.8457 -0.1559 17 7 4.8589 -8.1306 1.4854 18 6 4.0587 -8.3978 2.6896 19 6 4.3137 -9.8655 3.0926 20 6 5.6810 -10.1788 2.4227 21 8 6.7651 -9.7123 3.2284 22 6 5.8219 -11.6739 2.1301 23 6 6.9521 -12.4280 2.8336 24 6 7.0491 -12.1258 1.3360 25 6 5.5738 -9.3638 1.1095 26 7 3.6604 -3.5682 0.9290 27 1 -0.4850 0.8400 0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 5.3003 -2.6033 -1.7346 31 1 5.6984 -5.1079 -1.0603 32 1 3.6648 -5.9798 2.0676 33 1 4.3686 -7.7329 3.4958 34 1 3.0008 -8.2517 2.4717 35 1 4.3844 -9.9612 4.1761 36 1 3.5313 -10.5148 2.6998 37 1 6.6951 -8.7816 3.4815 38 1 4.8879 -12.2099 1.9614 39 1 7.5950 -11.8591 3.5051 40 1 6.7618 -13.4603 3.1273 41 1 6.9226 -12.9594 0.6453 42 1 7.7559 -11.3579 1.0217 43 1 5.0057 -9.9193 0.3634 44 1 6.5670 -9.1254 0.7289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649777171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:02 Heat of formation + Delta-G solvation = 50.089473 kcal Electronic energy + Delta-G solvation = -26434.616897 eV Core-core repulsion = 22583.591487 eV Total energy + Delta-G solvation = -3851.025410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04658 -40.34961 -38.99159 -36.60742 -35.23703 -34.79657 -33.27778 -31.56329 -30.79114 -29.45695 -29.03847 -27.11739 -24.79545 -22.77755 -22.64726 -22.44525 -21.31401 -20.43411 -20.17463 -19.40725 -18.27674 -17.15797 -16.95078 -16.81730 -16.28184 -15.79248 -15.58417 -15.17914 -14.85295 -14.67401 -14.39297 -13.94293 -13.56667 -13.46845 -13.19439 -13.07697 -12.61082 -12.53620 -12.49216 -12.29097 -12.11568 -11.87169 -11.76459 -11.43685 -11.16851 -11.04614 -10.78545 -10.65640 -10.56672 -10.13515 -10.11752 -10.00503 -9.78332 -9.52558 -8.92342 -8.76599 -8.17707 -7.48388 -6.23565 -4.25715 2.17158 2.56718 3.01633 3.14982 3.21507 3.22741 3.28936 3.34636 3.68811 3.76358 3.99128 4.03520 4.14114 4.22909 4.28581 4.56987 4.66034 4.77965 4.85695 4.98586 5.04261 5.15781 5.35085 5.36168 5.37862 5.44957 5.46870 5.53525 5.63867 5.69616 5.79769 5.84906 5.92141 6.20718 6.36827 6.45782 6.59835 6.70650 6.88738 7.19232 7.27569 7.41248 7.78727 7.83666 8.33904 8.50234 8.58290 8.86325 9.31460 10.89152 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.002247 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.554168 B =12458.772816 C =12833.296382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.278 3.722 14 N -0.640 5.640 15 C 0.732 3.268 16 O -0.562 6.562 17 N -0.638 5.638 18 C 0.088 3.912 19 C -0.153 4.153 20 C 0.153 3.847 21 O -0.545 6.545 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.173 4.173 25 C 0.105 3.895 26 N -0.300 5.300 27 H 0.268 0.732 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.381 0.619 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.139 -22.815 6.313 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.314 4.314 13 C 0.024 3.976 14 N -0.290 5.290 15 C 0.434 3.566 16 O -0.437 6.437 17 N -0.378 5.378 18 C -0.036 4.036 19 C -0.191 4.191 20 C 0.111 3.889 21 O -0.351 6.351 22 C -0.162 4.162 23 C -0.199 4.199 24 C -0.210 4.210 25 C -0.018 4.018 26 N -0.130 5.130 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.186 0.814 31 H 0.180 0.820 32 H 0.242 0.758 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.230 0.770 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.838 -22.459 6.281 26.153 hybrid contribution 0.058 1.200 -0.102 1.205 sum 11.895 -21.260 6.179 25.133 Atomic orbital electron populations 1.69872 1.06153 1.27286 1.49213 1.24841 0.94882 0.98814 0.94288 0.86901 0.80430 0.83812 0.78923 1.19707 1.20549 1.18862 1.21113 0.87812 0.95686 1.52583 0.89664 1.20040 0.97431 0.73022 0.98180 1.48591 1.32650 1.10206 1.18737 1.22548 0.95887 0.94671 0.96676 1.21531 1.11320 0.96775 1.01740 1.18782 0.98703 0.85784 0.94369 1.41365 1.48960 1.07229 1.31450 1.15072 0.80492 0.78686 0.82376 1.90878 1.44056 1.82345 1.26437 1.47479 1.50409 1.09718 1.30234 1.22156 0.96677 0.97115 0.87616 1.23369 0.97997 0.95277 1.02497 1.21648 0.86000 0.92142 0.89144 1.86472 1.45778 1.31756 1.71106 1.22028 0.94967 0.91895 1.07307 1.22883 1.01185 1.00245 0.95538 1.22981 0.99897 1.03440 0.94665 1.22744 0.98332 0.83721 0.97039 1.77382 1.23980 0.95527 1.16133 0.92193 0.94050 0.93319 0.81375 0.82038 0.75796 0.91053 0.90677 0.88840 0.89159 0.77035 0.86328 0.87552 0.88993 0.88614 0.88373 0.90422 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 7 C -0.53 -15.08 9.79 -34.44 -0.34 -15.42 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 C 0.23 5.52 5.33 -5.19 -0.03 5.49 16 10 N -0.32 -7.29 3.67 -62.56 -0.23 -7.52 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.60 9.61 -39.83 -0.38 -5.98 16 13 C 0.28 5.63 8.11 -154.36 -1.25 4.37 16 14 N -0.64 -10.21 5.41 -15.51 -0.08 -10.29 16 15 C 0.73 11.13 8.46 -86.92 -0.74 10.39 16 16 O -0.56 -10.38 13.72 5.29 0.07 -10.30 16 17 N -0.64 -6.82 3.33 -176.24 -0.59 -7.40 16 18 C 0.09 0.63 5.87 -3.06 -0.02 0.61 16 19 C -0.15 -0.85 6.13 -24.74 -0.15 -1.01 16 20 C 0.15 1.07 1.17 -88.31 -0.10 0.97 16 21 O -0.54 -4.30 11.71 -35.23 -0.41 -4.71 16 22 C -0.14 -0.91 5.25 -90.62 -0.48 -1.38 16 23 C -0.16 -1.05 9.91 -26.69 -0.26 -1.31 16 24 C -0.17 -1.13 9.98 -26.69 -0.27 -1.40 16 25 C 0.10 0.97 5.85 -2.53 -0.01 0.96 16 26 N -0.30 -6.90 12.42 31.44 0.39 -6.51 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 29 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 30 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 31 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 32 H 0.41 5.41 7.81 -40.82 -0.32 5.09 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.43 7.91 -51.93 -0.41 0.02 16 37 H 0.38 2.44 8.76 45.56 0.40 2.84 16 38 H 0.12 0.59 7.95 -51.93 -0.41 0.18 16 39 H 0.11 0.82 7.12 -51.93 -0.37 0.45 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 44 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -34.77 364.28 -9.15 -43.92 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.57 Total: 8.58 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.32 Total: -0.88 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.26 Total: -57.56 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.34 Total: -15.01 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.77 -9.15 -43.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649777171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.008 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds