Wall clock time and date at job start Tue Mar 31 2020 12:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48502 * 109.46966 * 270.00092 * 3 2 1 5 5 H 1.48508 * 109.46820 * 29.99659 * 3 2 1 6 6 H 1.48496 * 109.47145 * 149.99728 * 3 2 1 7 7 C 1.37881 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99883 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00184 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.34959 * 125.97837 * 124.99872 * 10 9 7 12 12 C 1.35240 * 107.86241 * 179.74548 * 11 10 9 13 13 C 1.40409 * 107.86356 * 0.43059 * 12 11 10 14 14 N 1.40195 * 125.97007 * 179.82618 * 13 12 11 15 15 C 1.34771 * 120.00121 * 359.71566 * 14 13 12 16 16 O 1.21588 * 120.00398 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00233 * 179.97438 * 15 14 13 18 18 C 1.47026 * 125.64285 * 359.97438 * 17 15 14 19 19 C 1.54321 * 107.26791 * 181.07596 * 18 17 15 20 20 C 1.55448 * 102.96961 * 22.19024 * 19 18 17 21 21 O 1.42902 * 111.01110 * 82.52556 * 20 19 18 22 22 C 1.53000 * 111.11787 * 206.45980 * 20 19 18 23 23 C 1.52997 * 117.50101 * 242.30431 * 22 20 19 24 24 C 1.53001 * 117.49817 * 173.64166 * 22 20 19 25 25 C 1.47419 * 125.65139 * 179.97438 * 17 15 14 26 26 N 1.31205 * 108.05393 * 359.56431 * 13 12 11 27 27 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46869 * 60.00056 * 9 7 2 29 29 H 1.08997 * 109.46924 * 300.00186 * 9 7 2 30 30 H 1.08002 * 126.06855 * 0.02562 * 11 10 9 31 31 H 1.07996 * 126.07193 * 180.26016 * 12 11 10 32 32 H 0.97000 * 119.99440 * 179.71775 * 14 13 12 33 33 H 1.08998 * 109.88266 * 300.48971 * 18 17 15 34 34 H 1.09000 * 109.88221 * 61.65788 * 18 17 15 35 35 H 1.08998 * 110.71927 * 140.55469 * 19 18 17 36 36 H 1.08998 * 110.72073 * 263.64892 * 19 18 17 37 37 H 0.96704 * 114.00255 * 307.25620 * 21 20 19 38 38 H 1.09000 * 115.54688 * 27.97660 * 22 20 19 39 39 H 1.08996 * 117.49875 * 0.02562 * 23 22 20 40 40 H 1.09000 * 117.49759 * 145.02001 * 23 22 20 41 41 H 1.08995 * 117.49807 * 214.98121 * 24 22 20 42 42 H 1.08998 * 117.49564 * 359.97438 * 24 22 20 43 43 H 1.09002 * 110.36926 * 274.69484 * 25 17 15 44 44 H 1.08995 * 110.36556 * 36.90768 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0010 11 6 4.8551 -3.1139 -0.8934 12 6 5.0604 -4.4047 -0.5459 13 6 4.2937 -4.6693 0.6002 14 7 4.2221 -5.8943 1.2783 15 6 4.9273 -6.9530 0.8333 16 8 5.6262 -6.8457 -0.1559 17 7 4.8589 -8.1306 1.4854 18 6 4.0587 -8.3978 2.6896 19 6 4.3137 -9.8655 3.0926 20 6 5.6810 -10.1788 2.4227 21 8 6.7651 -9.7123 3.2284 22 6 5.8219 -11.6739 2.1301 23 6 6.9521 -12.4280 2.8336 24 6 7.0491 -12.1258 1.3360 25 6 5.5738 -9.3638 1.1095 26 7 3.6604 -3.5682 0.9290 27 1 -0.4850 0.8400 0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 5.3003 -2.6033 -1.7346 31 1 5.6984 -5.1079 -1.0603 32 1 3.6648 -5.9798 2.0676 33 1 4.3686 -7.7329 3.4958 34 1 3.0008 -8.2517 2.4717 35 1 4.3844 -9.9612 4.1761 36 1 3.5313 -10.5148 2.6998 37 1 6.6951 -8.7816 3.4815 38 1 4.8879 -12.2099 1.9614 39 1 7.5950 -11.8591 3.5051 40 1 6.7618 -13.4603 3.1273 41 1 6.9226 -12.9594 0.6453 42 1 7.7559 -11.3579 1.0217 43 1 5.0057 -9.9193 0.3634 44 1 6.5670 -9.1254 0.7289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649777171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:01 Heat of formation + Delta-G solvation = 24.864361 kcal Electronic energy + Delta-G solvation = -26435.710740 eV Core-core repulsion = 22583.591487 eV Total energy + Delta-G solvation = -3852.119253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33551 -41.48256 -39.99415 -37.29725 -36.26978 -35.93197 -35.18070 -33.18736 -31.77034 -30.99524 -29.84478 -28.88314 -25.77738 -24.38977 -23.25021 -23.17864 -22.59692 -21.74528 -20.96661 -20.66784 -19.29767 -19.10041 -18.24732 -17.69602 -17.47438 -16.93452 -16.60140 -16.38280 -16.01117 -15.79620 -15.42885 -15.26517 -14.84419 -14.55241 -14.40661 -14.25798 -13.92452 -13.85306 -13.83335 -13.21578 -13.13740 -12.96275 -12.53326 -12.39390 -12.32687 -12.27092 -11.95923 -11.83559 -11.67174 -11.59797 -11.49881 -11.19097 -11.07160 -10.86688 -10.69277 -9.91401 -9.71674 -9.05477 -8.37279 -6.47452 0.95820 1.04743 1.37008 1.39963 1.49722 1.63136 1.95460 2.29225 2.32877 2.75186 2.82288 2.95331 3.14910 3.44278 3.55536 3.67421 3.90845 4.06533 4.14736 4.18841 4.24277 4.31995 4.36766 4.53388 4.60016 4.65994 4.74069 4.83962 4.84319 4.88485 4.90333 4.93433 4.99669 5.05554 5.15628 5.24341 5.29497 5.31841 5.40663 5.73424 5.88620 6.00680 6.40383 6.53401 6.60042 6.65573 7.04145 7.15416 7.29514 8.79781 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.002247 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.554168 B =12458.772816 C =12833.296382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.063 3.937 12 C -0.295 4.295 13 C 0.283 3.717 14 N -0.634 5.634 15 C 0.728 3.272 16 O -0.599 6.599 17 N -0.629 5.629 18 C 0.079 3.921 19 C -0.140 4.140 20 C 0.158 3.842 21 O -0.555 6.555 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.180 4.180 25 C 0.102 3.898 26 N -0.348 5.348 27 H 0.272 0.728 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.212 0.788 31 H 0.165 0.835 32 H 0.418 0.582 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.386 0.614 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.475 -23.089 6.727 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.126 5.126 11 C -0.085 4.085 12 C -0.326 4.326 13 C 0.028 3.972 14 N -0.286 5.286 15 C 0.430 3.570 16 O -0.477 6.477 17 N -0.367 5.367 18 C -0.042 4.042 19 C -0.178 4.178 20 C 0.116 3.884 21 O -0.362 6.362 22 C -0.161 4.161 23 C -0.197 4.197 24 C -0.217 4.217 25 C -0.021 4.021 26 N -0.178 5.178 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.228 0.772 31 H 0.183 0.817 32 H 0.255 0.745 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.235 0.765 38 H 0.157 0.843 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.181 -22.807 6.735 27.190 hybrid contribution -0.374 1.077 -0.221 1.161 sum 12.807 -21.730 6.514 26.051 Atomic orbital electron populations 1.70049 1.08555 1.28795 1.50685 1.25935 0.95795 1.03567 0.93252 0.85607 0.79498 0.77162 0.80053 1.17772 1.20637 1.16218 1.21228 0.90500 0.93713 1.52996 0.95567 1.19898 0.94165 0.74294 0.99685 1.48500 1.34113 1.10059 1.19928 1.23234 0.94203 0.94556 0.96529 1.21709 1.11703 0.97232 1.01931 1.19109 0.97382 0.86371 0.94368 1.41361 1.49333 1.06255 1.31616 1.15231 0.80056 0.79444 0.82306 1.90838 1.45513 1.83165 1.28190 1.47472 1.50132 1.08508 1.30552 1.22459 0.96488 0.98880 0.86417 1.23359 0.97172 0.93919 1.03368 1.21655 0.86696 0.92195 0.87859 1.86477 1.46450 1.32273 1.71042 1.22172 0.95697 0.91331 1.06896 1.22882 1.00944 1.00882 0.95036 1.23002 0.99980 1.03583 0.95150 1.22890 0.97144 0.83310 0.98722 1.77299 1.26055 0.96681 1.17806 0.91890 0.93588 0.90009 0.77169 0.81724 0.74486 0.89702 0.90064 0.87205 0.87609 0.76459 0.84337 0.89011 0.87441 0.87337 0.89960 0.89920 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 2 C 0.01 0.75 5.47 84.66 0.46 1.21 16 3 Si 0.96 40.68 27.47 68.60 1.88 42.57 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 7 C -0.55 -31.61 9.79 25.60 0.25 -31.36 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.24 11.11 5.33 85.63 0.46 11.57 16 10 N -0.34 -15.59 3.67 -351.85 -1.29 -16.88 16 11 C 0.06 2.36 11.43 83.52 0.96 3.32 16 12 C -0.29 -11.61 9.61 22.11 0.21 -11.40 16 13 C 0.28 11.60 8.11 133.32 1.08 12.68 16 14 N -0.63 -20.33 5.41 -321.24 -1.74 -22.07 16 15 C 0.73 22.15 8.46 179.06 1.51 23.66 16 16 O -0.60 -22.42 13.72 -3.99 -0.05 -22.48 16 17 N -0.63 -12.96 3.33 -829.75 -2.76 -15.72 16 18 C 0.08 1.00 5.87 86.73 0.51 1.51 16 19 C -0.14 -1.17 6.13 31.88 0.20 -0.98 16 20 C 0.16 1.95 1.17 -9.30 -0.01 1.94 16 21 O -0.56 -8.17 11.71 -148.98 -1.74 -9.92 16 22 C -0.14 -1.51 5.25 -10.79 -0.06 -1.57 16 23 C -0.16 -1.83 9.91 30.62 0.30 -1.53 16 24 C -0.18 -2.17 9.98 30.62 0.31 -1.86 16 25 C 0.10 1.83 5.85 86.86 0.51 2.34 16 26 N -0.35 -16.35 12.42 -54.43 -0.68 -17.02 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.05 2.09 7.20 -2.39 -0.02 2.07 16 29 H 0.08 3.26 7.50 -2.39 -0.02 3.24 16 30 H 0.21 5.80 8.06 -2.91 -0.02 5.78 16 31 H 0.17 6.42 5.91 -2.91 -0.02 6.40 16 32 H 0.42 11.10 7.81 -92.71 -0.72 10.38 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.11 0.62 7.91 -2.39 -0.02 0.60 16 37 H 0.39 4.57 8.76 -74.05 -0.65 3.92 16 38 H 0.14 0.93 7.95 -2.39 -0.02 0.92 16 39 H 0.09 1.34 7.12 -2.39 -0.02 1.32 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.41 8.04 -2.39 -0.02 1.39 16 44 H 0.07 1.51 8.03 -2.39 -0.02 1.49 16 Total: -1.00 -79.52 364.28 0.22 -79.30 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.39 Total: 30.43 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.69 Total: 9.54 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -6.17 Total: -129.45 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.80 Total: -32.39 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.57 kcal Total: -79.52 0.22 -79.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649777171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.168 kcal (2) G-P(sol) polarization free energy of solvation -79.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds