Wall clock time and date at job start Tue Mar 31 2020 12:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99592 * 2 1 4 4 H 1.48505 * 109.46778 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47262 * 300.00069 * 3 2 1 6 6 H 1.48492 * 109.47248 * 60.00152 * 3 2 1 7 7 C 1.37872 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00293 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97505 * 125.00147 * 10 9 7 12 12 C 1.35242 * 107.85681 * 180.02562 * 11 10 9 13 13 C 1.40404 * 107.87049 * 359.97438 * 12 11 10 14 14 N 1.40192 * 125.97165 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00483 * 0.02562 * 14 13 12 16 16 O 1.21600 * 119.99561 * 0.27624 * 15 14 13 17 17 N 1.34768 * 120.00208 * 179.97438 * 15 14 13 18 18 C 1.47022 * 125.65188 * 359.69185 * 17 15 14 19 19 C 1.54334 * 107.26934 * 178.84660 * 18 17 15 20 20 C 1.55153 * 103.01881 * 338.14539 * 19 18 17 21 21 O 1.42904 * 111.03605 * 277.21290 * 20 19 18 22 22 C 1.53001 * 111.00194 * 153.37792 * 20 19 18 23 23 C 1.53004 * 117.49901 * 141.77440 * 22 20 19 24 24 C 1.53001 * 117.49944 * 73.11582 * 22 20 19 25 25 C 1.47424 * 125.64787 * 180.02562 * 17 15 14 26 26 N 1.31207 * 108.05199 * 0.24692 * 13 12 11 27 27 H 0.97004 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46831 * 60.00351 * 9 7 2 29 29 H 1.08996 * 109.47135 * 300.00000 * 9 7 2 30 30 H 1.07998 * 126.06784 * 0.04079 * 11 10 9 31 31 H 1.08000 * 126.06683 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99982 * 180.02562 * 14 13 12 33 33 H 1.08997 * 109.88248 * 298.40269 * 18 17 15 34 34 H 1.09005 * 109.87693 * 59.56232 * 18 17 15 35 35 H 1.08994 * 110.85026 * 219.67451 * 19 18 17 36 36 H 1.09004 * 110.50818 * 96.45448 * 19 18 17 37 37 H 0.96695 * 113.99797 * 52.92358 * 21 20 19 38 38 H 1.08999 * 115.55634 * 287.43797 * 22 20 19 39 39 H 1.09001 * 117.49686 * 359.97438 * 23 22 20 40 40 H 1.08995 * 117.50327 * 145.02089 * 23 22 20 41 41 H 1.08998 * 117.49881 * 214.97949 * 24 22 20 42 42 H 1.08997 * 117.49857 * 359.97438 * 24 22 20 43 43 H 1.09004 * 110.36974 * 322.92555 * 25 17 15 44 44 H 1.08998 * 110.36909 * 85.14127 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8942 12 6 3.2612 -5.4422 0.5500 13 6 3.8692 -4.9144 -0.6002 14 7 4.9659 -5.4647 -1.2782 15 6 5.5310 -6.6043 -0.8327 16 8 5.0864 -7.1578 0.1545 17 7 6.5850 -7.1336 -1.4848 18 6 7.2122 -6.5780 -2.6929 19 6 8.3933 -7.5005 -3.0615 20 6 8.7104 -8.2148 -1.7211 21 8 9.5422 -7.4017 -0.8909 22 6 9.3538 -9.5811 -1.9666 23 6 10.4725 -10.0159 -1.0177 24 6 10.8040 -9.6018 -2.4536 25 6 7.2956 -8.3693 -1.1089 26 7 3.2352 -3.8129 -0.9262 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 1.5775 -4.7526 1.7354 31 1 3.5546 -6.3436 1.0675 32 1 5.3181 -5.0253 -2.0681 33 1 6.4893 -6.5542 -3.5084 34 1 7.5793 -5.5718 -2.4907 35 1 9.2499 -6.9176 -3.4000 36 1 8.0919 -8.2219 -3.8210 37 1 9.2007 -6.5088 -0.7462 38 1 8.6850 -10.3547 -2.3440 39 1 10.7504 -9.3284 -0.2188 40 1 10.5400 -11.0755 -0.7713 41 1 11.0895 -10.3892 -3.1512 42 1 11.2997 -8.6421 -2.5995 43 1 7.3591 -8.4554 -0.0241 44 1 6.7915 -9.2396 -1.5289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649777185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:05 Heat of formation + Delta-G solvation = 43.706422 kcal Electronic energy + Delta-G solvation = -26399.258117 eV Core-core repulsion = 22547.955917 eV Total energy + Delta-G solvation = -3851.302200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01514 -40.28718 -38.96969 -36.60451 -35.20916 -34.74444 -33.34133 -31.41603 -30.56009 -29.39765 -29.10049 -26.66590 -24.61726 -23.04931 -22.88670 -22.37384 -21.21903 -20.48747 -20.22563 -19.32564 -18.23301 -17.08558 -16.84468 -16.56907 -16.23222 -15.76633 -15.58233 -15.12817 -14.84439 -14.53537 -14.32895 -13.99768 -13.70207 -13.44037 -13.16251 -12.82299 -12.72524 -12.46441 -12.32263 -12.19082 -11.82773 -11.76654 -11.75580 -11.45302 -11.09377 -11.04489 -10.88508 -10.59486 -10.44168 -10.26603 -10.09840 -10.07482 -9.70329 -9.47956 -8.91553 -8.63693 -8.10666 -7.41942 -6.24393 -4.29277 2.19937 2.63564 3.07547 3.21944 3.29442 3.29448 3.34586 3.41290 3.70824 3.81400 4.02139 4.06811 4.14793 4.27453 4.34300 4.58048 4.64975 4.76614 4.85305 5.00783 5.10764 5.15906 5.33891 5.36453 5.41483 5.43560 5.49511 5.59627 5.61867 5.79256 5.80944 5.86858 5.92064 6.28406 6.53667 6.63924 6.81126 6.98394 7.09366 7.20405 7.47561 7.69302 7.78827 7.93342 8.06511 8.52845 8.65737 8.81084 9.36322 10.84326 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025325 B = 0.002325 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.344552 B =12037.763104 C =12665.564072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.052 3.948 12 C -0.286 4.286 13 C 0.274 3.726 14 N -0.640 5.640 15 C 0.732 3.268 16 O -0.562 6.562 17 N -0.639 5.639 18 C 0.088 3.912 19 C -0.152 4.152 20 C 0.153 3.847 21 O -0.545 6.545 22 C -0.143 4.143 23 C -0.164 4.164 24 C -0.168 4.168 25 C 0.105 3.895 26 N -0.307 5.307 27 H 0.266 0.734 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.406 0.594 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.382 0.618 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.617 -18.558 -6.252 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.318 4.318 13 C 0.021 3.979 14 N -0.290 5.290 15 C 0.433 3.567 16 O -0.437 6.437 17 N -0.379 5.379 18 C -0.035 4.035 19 C -0.191 4.191 20 C 0.111 3.889 21 O -0.351 6.351 22 C -0.162 4.162 23 C -0.201 4.201 24 C -0.205 4.205 25 C -0.019 4.019 26 N -0.138 5.138 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.178 0.822 32 H 0.241 0.759 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.231 0.769 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.247 -18.267 -6.286 26.573 hybrid contribution 0.080 1.131 -0.005 1.134 sum 18.327 -17.135 -6.291 25.867 Atomic orbital electron populations 1.69929 1.06031 1.27500 1.49906 1.24954 0.94994 0.99567 0.94661 0.86273 0.80042 0.82480 0.77708 1.19586 1.20715 1.20761 1.21296 0.94022 0.89375 1.51826 0.91266 1.19745 0.85616 0.81315 0.99265 1.49062 1.23068 1.19767 1.18297 1.22555 1.00276 0.90258 0.96730 1.21507 1.02078 1.06474 1.01705 1.18775 0.90694 0.94076 0.94397 1.41361 1.31347 1.24973 1.31320 1.15083 0.79103 0.80150 0.82361 1.90886 1.63591 1.62395 1.26782 1.47481 1.32905 1.27716 1.29761 1.22151 0.95522 0.97888 0.87974 1.23291 0.97934 0.99449 0.98383 1.21589 0.88224 0.90112 0.88961 1.86463 1.49808 1.28374 1.70497 1.22005 0.91952 0.95416 1.06813 1.22917 1.01552 1.01648 0.94011 1.22910 0.96668 1.03268 0.97688 1.22740 0.90658 0.86346 1.02137 1.77319 1.03786 1.16103 1.16603 0.92393 0.93735 0.92516 0.81477 0.82232 0.75921 0.90791 0.91093 0.88933 0.89155 0.76932 0.86291 0.87637 0.88940 0.88840 0.88449 0.89164 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.68 9.23 -34.44 -0.32 -15.00 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 9 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 10 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.29 -5.82 9.61 -39.83 -0.38 -6.20 16 13 C 0.27 5.62 8.11 -154.37 -1.25 4.36 16 14 N -0.64 -10.26 5.41 -15.51 -0.08 -10.34 16 15 C 0.73 11.19 8.46 -86.93 -0.74 10.46 16 16 O -0.56 -10.49 13.73 5.28 0.07 -10.42 16 17 N -0.64 -6.81 3.33 -176.22 -0.59 -7.40 16 18 C 0.09 0.63 5.88 -3.06 -0.02 0.61 16 19 C -0.15 -0.85 6.09 -24.89 -0.15 -1.00 16 20 C 0.15 1.08 1.14 -88.46 -0.10 0.98 16 21 O -0.55 -4.42 11.74 -35.23 -0.41 -4.83 16 22 C -0.14 -0.90 5.09 -90.62 -0.46 -1.36 16 23 C -0.16 -1.11 9.92 -26.69 -0.26 -1.37 16 24 C -0.17 -1.00 10.07 -26.69 -0.27 -1.26 16 25 C 0.10 0.97 6.09 -2.52 -0.02 0.95 16 26 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 31 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 32 H 0.41 5.39 7.81 -40.82 -0.32 5.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.43 8.04 -51.93 -0.42 0.01 16 37 H 0.38 2.58 8.77 45.56 0.40 2.98 16 38 H 0.12 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.11 0.86 7.29 -51.93 -0.38 0.48 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.99 8.04 -51.93 -0.42 0.58 16 44 H 0.08 0.65 7.99 -51.93 -0.41 0.24 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -33.39 368.43 -9.50 -42.89 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.62 Total: 7.16 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -4.29 Total: 0.15 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.23 Total: -56.83 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.34 Total: -15.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.39 -9.50 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649777185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.592 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds