Wall clock time and date at job start Tue Mar 31 2020 12:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99592 * 2 1 4 4 H 1.48505 * 109.46778 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47262 * 300.00069 * 3 2 1 6 6 H 1.48492 * 109.47248 * 60.00152 * 3 2 1 7 7 C 1.37872 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00293 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97505 * 125.00147 * 10 9 7 12 12 C 1.35242 * 107.85681 * 180.02562 * 11 10 9 13 13 C 1.40404 * 107.87049 * 359.97438 * 12 11 10 14 14 N 1.40192 * 125.97165 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00483 * 0.02562 * 14 13 12 16 16 O 1.21600 * 119.99561 * 0.27624 * 15 14 13 17 17 N 1.34768 * 120.00208 * 179.97438 * 15 14 13 18 18 C 1.47022 * 125.65188 * 359.69185 * 17 15 14 19 19 C 1.54334 * 107.26934 * 178.84660 * 18 17 15 20 20 C 1.55153 * 103.01881 * 338.14539 * 19 18 17 21 21 O 1.42904 * 111.03605 * 277.21290 * 20 19 18 22 22 C 1.53001 * 111.00194 * 153.37792 * 20 19 18 23 23 C 1.53004 * 117.49901 * 141.77440 * 22 20 19 24 24 C 1.53001 * 117.49944 * 73.11582 * 22 20 19 25 25 C 1.47424 * 125.64787 * 180.02562 * 17 15 14 26 26 N 1.31207 * 108.05199 * 0.24692 * 13 12 11 27 27 H 0.97004 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46831 * 60.00351 * 9 7 2 29 29 H 1.08996 * 109.47135 * 300.00000 * 9 7 2 30 30 H 1.07998 * 126.06784 * 0.04079 * 11 10 9 31 31 H 1.08000 * 126.06683 * 180.02562 * 12 11 10 32 32 H 0.97002 * 119.99982 * 180.02562 * 14 13 12 33 33 H 1.08997 * 109.88248 * 298.40269 * 18 17 15 34 34 H 1.09005 * 109.87693 * 59.56232 * 18 17 15 35 35 H 1.08994 * 110.85026 * 219.67451 * 19 18 17 36 36 H 1.09004 * 110.50818 * 96.45448 * 19 18 17 37 37 H 0.96695 * 113.99797 * 52.92358 * 21 20 19 38 38 H 1.08999 * 115.55634 * 287.43797 * 22 20 19 39 39 H 1.09001 * 117.49686 * 359.97438 * 23 22 20 40 40 H 1.08995 * 117.50327 * 145.02089 * 23 22 20 41 41 H 1.08998 * 117.49881 * 214.97949 * 24 22 20 42 42 H 1.08997 * 117.49857 * 359.97438 * 24 22 20 43 43 H 1.09004 * 110.36974 * 322.92555 * 25 17 15 44 44 H 1.08998 * 110.36909 * 85.14127 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8942 12 6 3.2612 -5.4422 0.5500 13 6 3.8692 -4.9144 -0.6002 14 7 4.9659 -5.4647 -1.2782 15 6 5.5310 -6.6043 -0.8327 16 8 5.0864 -7.1578 0.1545 17 7 6.5850 -7.1336 -1.4848 18 6 7.2122 -6.5780 -2.6929 19 6 8.3933 -7.5005 -3.0615 20 6 8.7104 -8.2148 -1.7211 21 8 9.5422 -7.4017 -0.8909 22 6 9.3538 -9.5811 -1.9666 23 6 10.4725 -10.0159 -1.0177 24 6 10.8040 -9.6018 -2.4536 25 6 7.2956 -8.3693 -1.1089 26 7 3.2352 -3.8129 -0.9262 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 1.5775 -4.7526 1.7354 31 1 3.5546 -6.3436 1.0675 32 1 5.3181 -5.0253 -2.0681 33 1 6.4893 -6.5542 -3.5084 34 1 7.5793 -5.5718 -2.4907 35 1 9.2499 -6.9176 -3.4000 36 1 8.0919 -8.2219 -3.8210 37 1 9.2007 -6.5088 -0.7462 38 1 8.6850 -10.3547 -2.3440 39 1 10.7504 -9.3284 -0.2188 40 1 10.5400 -11.0755 -0.7713 41 1 11.0895 -10.3892 -3.1512 42 1 11.2997 -8.6421 -2.5995 43 1 7.3591 -8.4554 -0.0241 44 1 6.7915 -9.2396 -1.5289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649777185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:05 Heat of formation + Delta-G solvation = 21.164896 kcal Electronic energy + Delta-G solvation = -26400.235591 eV Core-core repulsion = 22547.955917 eV Total energy + Delta-G solvation = -3852.279674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31121 -41.46231 -39.98573 -37.29202 -36.25511 -35.90478 -35.25175 -32.91885 -31.63767 -30.96089 -29.91981 -28.51984 -25.71895 -24.64470 -23.54405 -22.97204 -22.55623 -21.77801 -21.06383 -20.58284 -19.25138 -18.69431 -18.25445 -17.70848 -17.40756 -16.94570 -16.59310 -16.30576 -16.06791 -15.87301 -15.50235 -15.10291 -14.71065 -14.54543 -14.24949 -14.19506 -13.84194 -13.81338 -13.68971 -13.32891 -13.06918 -12.93248 -12.72894 -12.32631 -12.31173 -12.25583 -12.08884 -11.97058 -11.67666 -11.62159 -11.40730 -11.18954 -11.07036 -10.72459 -10.63349 -9.89730 -9.70031 -9.06460 -8.32990 -6.47001 0.98300 1.06787 1.37363 1.38618 1.51664 1.64660 1.98206 2.34307 2.35187 2.77609 2.85266 2.98654 3.17048 3.45134 3.55073 3.68243 3.95180 4.08601 4.15253 4.24061 4.26361 4.31979 4.43373 4.55277 4.67740 4.74917 4.81553 4.86464 4.90022 4.92974 4.95872 5.01562 5.03517 5.06602 5.15926 5.32675 5.33290 5.40695 5.56477 5.72368 5.84656 5.93357 6.27835 6.56724 6.65374 6.66710 7.07505 7.22922 7.31584 8.74736 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025325 B = 0.002325 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.344552 B =12037.763104 C =12665.564072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.058 3.942 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.633 5.633 15 C 0.728 3.272 16 O -0.600 6.600 17 N -0.628 5.628 18 C 0.080 3.920 19 C -0.139 4.139 20 C 0.158 3.842 21 O -0.557 6.557 22 C -0.145 4.145 23 C -0.178 4.178 24 C -0.158 4.158 25 C 0.101 3.899 26 N -0.345 5.345 27 H 0.272 0.728 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.202 0.798 31 H 0.165 0.835 32 H 0.419 0.581 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.386 0.614 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.199 -18.960 -7.348 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.325 4.325 13 C 0.028 3.972 14 N -0.284 5.284 15 C 0.429 3.571 16 O -0.478 6.478 17 N -0.366 5.366 18 C -0.042 4.042 19 C -0.177 4.177 20 C 0.116 3.884 21 O -0.364 6.364 22 C -0.163 4.163 23 C -0.215 4.215 24 C -0.195 4.195 25 C -0.022 4.022 26 N -0.177 5.177 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.219 0.781 31 H 0.182 0.818 32 H 0.256 0.744 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.235 0.765 38 H 0.152 0.848 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.880 -18.693 -7.423 28.280 hybrid contribution -0.327 1.122 0.336 1.216 sum 19.552 -17.572 -7.087 27.227 Atomic orbital electron populations 1.70003 1.07195 1.28697 1.50045 1.25753 0.95868 1.02760 0.93943 0.85283 0.78382 0.78343 0.78295 1.19911 1.19808 1.19558 1.21418 0.93355 0.90941 1.52655 0.92981 1.19356 0.85660 0.81484 0.98166 1.48835 1.23688 1.20349 1.19716 1.23149 1.00362 0.88849 0.96674 1.21667 1.02261 1.06660 1.01921 1.19060 0.90878 0.93042 0.94201 1.41331 1.30327 1.25257 1.31506 1.15239 0.79844 0.79727 0.82263 1.90848 1.65075 1.63280 1.28581 1.47459 1.31240 1.27783 1.30123 1.22455 0.96285 0.98802 0.86621 1.23270 0.97512 0.99318 0.97596 1.21609 0.86661 0.90788 0.89330 1.86471 1.50125 1.28821 1.70966 1.22109 0.92377 0.95183 1.06654 1.22917 1.02544 1.01841 0.94161 1.22946 0.95969 1.03459 0.97108 1.22908 0.92171 0.86003 1.01119 1.77239 1.04857 1.17801 1.17759 0.91847 0.95975 0.92313 0.78137 0.81812 0.74401 0.89706 0.89999 0.87457 0.87594 0.76464 0.84798 0.89519 0.87989 0.87231 0.88953 0.91436 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.21 13.29 21.45 0.28 -51.92 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.89 9.23 25.60 0.24 -30.65 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.27 14.20 6.26 85.63 0.54 14.74 16 10 N -0.34 -16.37 3.67 -351.84 -1.29 -17.66 16 11 C 0.06 2.35 11.44 83.52 0.96 3.30 16 12 C -0.29 -11.93 9.61 22.11 0.21 -11.72 16 13 C 0.28 11.63 8.11 133.32 1.08 12.72 16 14 N -0.63 -19.95 5.41 -321.23 -1.74 -21.69 16 15 C 0.73 21.90 8.46 179.06 1.51 23.41 16 16 O -0.60 -22.49 13.73 -4.03 -0.06 -22.55 16 17 N -0.63 -12.61 3.33 -829.70 -2.76 -15.36 16 18 C 0.08 0.96 5.88 86.73 0.51 1.47 16 19 C -0.14 -1.12 6.09 31.78 0.19 -0.92 16 20 C 0.16 1.93 1.14 -9.40 -0.01 1.92 16 21 O -0.56 -8.41 11.74 -148.98 -1.75 -10.16 16 22 C -0.14 -1.51 5.09 -10.79 -0.05 -1.56 16 23 C -0.18 -2.17 9.92 30.62 0.30 -1.87 16 24 C -0.16 -1.50 10.07 30.62 0.31 -1.19 16 25 C 0.10 1.75 6.09 86.86 0.53 2.28 16 26 N -0.35 -16.27 12.42 -54.44 -0.68 -16.94 16 27 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 30 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 31 H 0.16 6.57 5.91 -2.91 -0.02 6.55 16 32 H 0.42 10.71 7.81 -92.71 -0.72 9.99 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.11 0.60 8.04 -2.39 -0.02 0.58 16 37 H 0.39 4.84 8.77 -74.06 -0.65 4.19 16 38 H 0.13 1.00 8.07 -2.39 -0.02 0.98 16 39 H 0.09 1.40 7.29 -2.39 -0.02 1.38 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.50 8.04 -2.38 -0.02 1.48 16 44 H 0.09 1.35 7.99 -2.39 -0.02 1.33 16 Total: -1.00 -72.68 368.43 0.48 -72.20 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.34 Total: 25.11 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.78 Total: 13.33 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -6.18 Total: -123.58 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.80 Total: -32.71 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.68 0.48 -72.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649777185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.361 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds