Wall clock time and date at job start Tue Mar 31 2020 12:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.56197 * 2 1 4 4 C 1.52995 * 117.50177 * 214.30701 * 2 1 3 5 5 C 1.52998 * 117.49911 * 145.68189 * 2 1 3 6 6 H 1.08999 * 117.52245 * 214.96782 * 5 2 1 7 7 C 1.50706 * 117.49779 * 0.02562 * 5 2 1 8 8 O 1.21279 * 119.99814 * 0.02562 * 7 5 2 9 9 N 1.34772 * 119.99664 * 180.02562 * 7 5 2 10 10 C 1.46508 * 119.99641 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.46992 * 180.02562 * 10 9 7 12 12 N 1.31793 * 119.08894 * 270.01785 * 11 10 9 13 13 C 1.32793 * 120.71497 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.51115 * 180.02562 * 13 12 11 15 15 C 1.39423 * 118.97859 * 359.75523 * 13 12 11 16 16 C 1.38193 * 118.34247 * 0.48348 * 15 13 12 17 17 C 1.50706 * 120.40704 * 179.78411 * 16 15 13 18 18 N 1.46500 * 109.46949 * 94.72480 * 17 16 15 19 19 C 1.36931 * 120.00400 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00410 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99694 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99817 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47409 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46731 * 120.00236 * 23 21 19 26 26 H 1.48500 * 109.47123 * 240.00020 * 23 21 19 27 27 N 1.31759 * 119.09416 * 89.99836 * 11 10 9 28 28 H 1.09003 * 109.47202 * 274.31231 * 1 2 3 29 29 H 1.09003 * 109.46993 * 34.31301 * 1 2 3 30 30 H 1.08998 * 109.47047 * 154.31329 * 1 2 3 31 31 H 1.08999 * 109.46950 * 205.68891 * 3 2 1 32 32 H 1.09003 * 109.46730 * 325.68534 * 3 2 1 33 33 H 1.08997 * 109.47489 * 85.68941 * 3 2 1 34 34 H 1.08999 * 117.49982 * 145.02346 * 4 2 1 35 35 H 1.09003 * 117.49948 * 0.02562 * 4 2 1 36 36 H 0.96998 * 120.00981 * 0.02562 * 9 7 5 37 37 H 1.08999 * 109.47290 * 60.00048 * 10 9 7 38 38 H 1.09000 * 109.46769 * 299.99918 * 10 9 7 39 39 H 0.96701 * 113.99530 * 90.00431 * 14 13 12 40 40 H 1.07996 * 120.82926 * 180.25065 * 15 13 12 41 41 H 1.09000 * 109.47318 * 214.71867 * 17 16 15 42 42 H 1.09000 * 109.47161 * 334.72497 * 17 16 15 43 43 H 0.97010 * 119.99909 * 359.97438 * 18 17 16 44 44 H 0.97001 * 119.99453 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1716 -0.8755 1.2684 7 6 1.3719 -2.1408 1.4606 8 8 0.1638 -2.0539 1.4002 9 7 1.9415 -3.1493 2.1497 10 6 1.1011 -4.1411 2.8253 11 6 1.9768 -5.1533 3.5180 12 7 2.3512 -6.2329 2.8613 13 6 3.1230 -7.1453 3.4401 14 8 3.5060 -8.2537 2.7608 15 6 3.5380 -6.9428 4.7557 16 6 3.1174 -5.7992 5.4076 17 6 3.5342 -5.5361 6.8318 18 7 4.7273 -4.6859 6.8422 19 6 5.2911 -4.3118 8.0326 20 1 4.8564 -4.6437 8.9639 21 6 6.4218 -3.5067 8.0425 22 7 6.9518 -3.1025 6.9075 23 14 7.1904 -2.9958 9.6666 24 1 6.4102 -3.5774 10.7882 25 1 8.5896 -3.4896 9.7290 26 1 7.1830 -1.5146 9.7735 27 7 2.3474 -4.9343 4.7633 28 1 -0.3634 0.0773 1.0248 29 1 -0.3633 0.8488 -0.5793 30 1 -0.3633 -0.9261 -0.4454 31 1 3.1824 1.3084 -0.4455 32 1 1.5812 2.0743 -0.5794 33 1 2.2773 1.7414 1.0247 34 1 3.1716 -0.8752 -1.2681 35 1 1.6113 -1.8583 -1.2685 36 1 2.9078 -3.2186 2.1983 37 1 0.4729 -4.6456 2.0912 38 1 0.4708 -3.6422 3.5614 39 1 4.3359 -8.1502 2.2754 40 1 4.1693 -7.6635 5.2540 41 1 2.7247 -5.0325 7.3601 42 1 3.7576 -6.4817 7.3256 43 1 5.1179 -4.3880 6.0057 44 1 7.7417 -2.5397 6.9145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689137225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:56 Heat of formation + Delta-G solvation = 9.776501 kcal Electronic energy + Delta-G solvation = -26073.473366 eV Core-core repulsion = 22220.699854 eV Total energy + Delta-G solvation = -3852.773512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.28167 -40.27094 -37.90001 -37.40739 -35.62361 -34.59755 -33.15424 -31.86820 -30.71478 -29.73146 -27.68907 -27.56546 -26.60006 -24.15541 -23.51686 -22.69205 -21.51014 -20.61362 -19.36867 -18.81721 -17.83136 -17.34814 -17.23748 -16.16239 -15.89860 -15.42640 -15.32322 -14.89754 -14.66316 -14.37053 -14.00115 -13.88160 -13.70578 -13.43233 -13.27767 -13.04775 -12.82594 -12.68195 -12.64784 -12.19184 -12.11417 -11.94188 -11.93846 -11.38317 -11.09539 -10.91430 -10.66901 -10.42156 -10.38973 -10.15149 -10.06317 -9.87957 -9.69411 -9.37855 -9.22263 -9.16849 -9.03381 -7.10482 -5.88930 -3.19977 0.73841 0.97274 2.42830 2.88548 3.28011 3.37118 3.43063 3.45177 3.57886 3.69736 3.86847 4.31529 4.44371 4.50428 4.53016 4.61085 4.85674 4.92314 4.98161 5.09955 5.26522 5.33276 5.39926 5.44966 5.48920 5.52005 5.57834 5.70018 5.74316 5.77505 5.86122 5.89935 5.91486 6.05206 6.15746 6.22869 6.32272 6.42292 6.43350 6.99009 7.25584 7.38651 7.58790 8.07386 8.14687 8.26927 9.39601 9.89814 10.25609 11.33571 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.003288 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.231006 B = 8514.770499 C =10751.645486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.093 4.093 3 C -0.118 4.118 4 C -0.147 4.147 5 C -0.189 4.189 6 H 0.125 0.875 7 C 0.549 3.451 8 O -0.536 6.536 9 N -0.716 5.716 10 C 0.198 3.802 11 C 0.316 3.684 12 N -0.533 5.533 13 C 0.354 3.646 14 O -0.477 6.477 15 C -0.218 4.218 16 C 0.200 3.800 17 C 0.196 3.804 18 N -0.722 5.722 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.911 3.089 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 N -0.491 5.491 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.404 0.596 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.407 0.593 40 H 0.156 0.844 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 -0.465 -15.151 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.175 4.175 4 C -0.184 4.184 5 C -0.210 4.210 6 H 0.143 0.857 7 C 0.336 3.664 8 O -0.413 6.413 9 N -0.368 5.368 10 C 0.073 3.927 11 C 0.046 3.954 12 N -0.258 5.258 13 C 0.166 3.834 14 O -0.284 6.284 15 C -0.242 4.242 16 C 0.055 3.945 17 C 0.068 3.932 18 N -0.367 5.367 19 C -0.374 4.374 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.217 1.217 27 N -0.208 5.208 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.238 0.762 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.266 0.734 40 H 0.174 0.826 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.218 0.782 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.064 -0.064 -15.210 18.238 hybrid contribution 2.311 -0.401 0.876 2.504 sum -7.753 -0.464 -14.334 16.303 Atomic orbital electron populations 1.21360 0.90632 1.01307 1.02701 1.21588 0.95992 0.90572 1.01160 1.21413 0.99935 0.93716 1.02426 1.23222 1.02865 1.01572 0.90765 1.22359 1.02212 1.00683 0.95747 0.85703 1.19609 0.88096 0.80705 0.77962 1.90699 1.14433 1.74673 1.61519 1.45788 1.10637 1.27305 1.53111 1.19839 0.90449 0.86397 0.96064 1.22737 0.94230 0.90810 0.87586 1.67675 1.14449 1.03076 1.40645 1.19373 0.90470 0.84938 0.88583 1.84703 1.45938 1.30041 1.67751 1.22978 1.03854 1.00963 0.96366 1.22197 0.87384 0.87315 0.97598 1.19730 0.91694 0.96041 0.85743 1.42164 1.28415 1.59173 1.06945 1.19254 1.07118 1.25426 0.85625 0.90678 1.24767 0.98463 1.00257 0.97106 1.69675 1.24004 1.39885 1.24315 0.86059 0.78924 0.78121 0.82697 1.20374 1.21771 1.21708 1.68194 1.12241 1.31617 1.08715 0.91290 0.93338 0.91713 0.92237 0.91668 0.91773 0.87839 0.88261 0.76151 0.88854 0.88452 0.73378 0.82592 0.93358 0.93740 0.78164 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 8.09 37.16 0.30 -0.81 16 2 C -0.09 -0.91 2.70 -154.51 -0.42 -1.33 16 3 C -0.12 -0.95 9.85 37.16 0.37 -0.59 16 4 C -0.15 -1.31 9.52 -26.73 -0.25 -1.57 16 5 C -0.19 -2.01 5.91 -91.77 -0.54 -2.55 16 6 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 7 C 0.55 7.20 7.59 -10.98 -0.08 7.11 16 8 O -0.54 -8.26 13.10 5.56 0.07 -8.19 16 9 N -0.72 -9.14 5.55 -61.46 -0.34 -9.48 16 10 C 0.20 2.67 6.11 -5.19 -0.03 2.63 16 11 C 0.32 4.80 7.01 -157.22 -1.10 3.70 16 12 N -0.53 -7.95 10.36 -10.78 -0.11 -8.07 16 13 C 0.35 4.97 7.83 -16.70 -0.13 4.84 16 14 O -0.48 -5.43 13.58 -18.25 -0.25 -5.68 16 15 C -0.22 -3.20 9.79 -39.16 -0.38 -3.59 16 16 C 0.20 3.44 6.18 -82.31 -0.51 2.93 16 17 C 0.20 3.79 6.61 -5.19 -0.03 3.75 16 18 N -0.72 -17.58 5.59 -61.08 -0.34 -17.92 16 19 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 20 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 23 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 N -0.49 -8.48 10.27 -7.05 -0.07 -8.55 16 28 H 0.07 0.86 7.26 -51.93 -0.38 0.48 16 29 H 0.05 0.43 7.92 -51.93 -0.41 0.02 16 30 H 0.06 0.76 7.01 -51.93 -0.36 0.40 16 31 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 32 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 36 H 0.40 4.90 8.46 -40.82 -0.35 4.56 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.41 2.60 9.06 45.56 0.41 3.01 16 40 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 43 H 0.38 10.01 7.66 -40.82 -0.31 9.70 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -32.76 377.35 -8.28 -41.04 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -5.56 Total: 13.49 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -3.07 Total: 7.49 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.14 Total: -70.51 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.17 Total: -13.87 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.76 -8.28 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689137225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.815 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds