Wall clock time and date at job start Tue Mar 31 2020 12:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.56197 * 2 1 4 4 C 1.52995 * 117.50177 * 214.30701 * 2 1 3 5 5 C 1.52998 * 117.49911 * 145.68189 * 2 1 3 6 6 H 1.08999 * 117.52245 * 214.96782 * 5 2 1 7 7 C 1.50706 * 117.49779 * 0.02562 * 5 2 1 8 8 O 1.21279 * 119.99814 * 0.02562 * 7 5 2 9 9 N 1.34772 * 119.99664 * 180.02562 * 7 5 2 10 10 C 1.46508 * 119.99641 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.46992 * 180.02562 * 10 9 7 12 12 N 1.31793 * 119.08894 * 270.01785 * 11 10 9 13 13 C 1.32793 * 120.71497 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.51115 * 180.02562 * 13 12 11 15 15 C 1.39423 * 118.97859 * 359.75523 * 13 12 11 16 16 C 1.38193 * 118.34247 * 0.48348 * 15 13 12 17 17 C 1.50706 * 120.40704 * 179.78411 * 16 15 13 18 18 N 1.46500 * 109.46949 * 94.72480 * 17 16 15 19 19 C 1.36931 * 120.00400 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00410 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99694 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99817 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47409 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46731 * 120.00236 * 23 21 19 26 26 H 1.48500 * 109.47123 * 240.00020 * 23 21 19 27 27 N 1.31759 * 119.09416 * 89.99836 * 11 10 9 28 28 H 1.09003 * 109.47202 * 274.31231 * 1 2 3 29 29 H 1.09003 * 109.46993 * 34.31301 * 1 2 3 30 30 H 1.08998 * 109.47047 * 154.31329 * 1 2 3 31 31 H 1.08999 * 109.46950 * 205.68891 * 3 2 1 32 32 H 1.09003 * 109.46730 * 325.68534 * 3 2 1 33 33 H 1.08997 * 109.47489 * 85.68941 * 3 2 1 34 34 H 1.08999 * 117.49982 * 145.02346 * 4 2 1 35 35 H 1.09003 * 117.49948 * 0.02562 * 4 2 1 36 36 H 0.96998 * 120.00981 * 0.02562 * 9 7 5 37 37 H 1.08999 * 109.47290 * 60.00048 * 10 9 7 38 38 H 1.09000 * 109.46769 * 299.99918 * 10 9 7 39 39 H 0.96701 * 113.99530 * 90.00431 * 14 13 12 40 40 H 1.07996 * 120.82926 * 180.25065 * 15 13 12 41 41 H 1.09000 * 109.47318 * 214.71867 * 17 16 15 42 42 H 1.09000 * 109.47161 * 334.72497 * 17 16 15 43 43 H 0.97010 * 119.99909 * 359.97438 * 18 17 16 44 44 H 0.97001 * 119.99453 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1716 -0.8755 1.2684 7 6 1.3719 -2.1408 1.4606 8 8 0.1638 -2.0539 1.4002 9 7 1.9415 -3.1493 2.1497 10 6 1.1011 -4.1411 2.8253 11 6 1.9768 -5.1533 3.5180 12 7 2.3512 -6.2329 2.8613 13 6 3.1230 -7.1453 3.4401 14 8 3.5060 -8.2537 2.7608 15 6 3.5380 -6.9428 4.7557 16 6 3.1174 -5.7992 5.4076 17 6 3.5342 -5.5361 6.8318 18 7 4.7273 -4.6859 6.8422 19 6 5.2911 -4.3118 8.0326 20 1 4.8564 -4.6437 8.9639 21 6 6.4218 -3.5067 8.0425 22 7 6.9518 -3.1025 6.9075 23 14 7.1904 -2.9958 9.6666 24 1 6.4102 -3.5774 10.7882 25 1 8.5896 -3.4896 9.7290 26 1 7.1830 -1.5146 9.7735 27 7 2.3474 -4.9343 4.7633 28 1 -0.3634 0.0773 1.0248 29 1 -0.3633 0.8488 -0.5793 30 1 -0.3633 -0.9261 -0.4454 31 1 3.1824 1.3084 -0.4455 32 1 1.5812 2.0743 -0.5794 33 1 2.2773 1.7414 1.0247 34 1 3.1716 -0.8752 -1.2681 35 1 1.6113 -1.8583 -1.2685 36 1 2.9078 -3.2186 2.1983 37 1 0.4729 -4.6456 2.0912 38 1 0.4708 -3.6422 3.5614 39 1 4.3359 -8.1502 2.2754 40 1 4.1693 -7.6635 5.2540 41 1 2.7247 -5.0325 7.3601 42 1 3.7576 -6.4817 7.3256 43 1 5.1179 -4.3880 6.0057 44 1 7.7417 -2.5397 6.9145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689137225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:55 Heat of formation + Delta-G solvation = -16.518562 kcal Electronic energy + Delta-G solvation = -26074.613606 eV Core-core repulsion = 22220.699854 eV Total energy + Delta-G solvation = -3853.913752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.46970 -41.24231 -38.89399 -38.33398 -37.11670 -35.89459 -34.65021 -33.17810 -32.39460 -30.57579 -28.77796 -28.32458 -28.22133 -25.25346 -25.10986 -23.90170 -22.86758 -21.56880 -20.25973 -19.85445 -19.43512 -18.80558 -18.27121 -17.23302 -17.04003 -16.75774 -16.50226 -16.35018 -15.69450 -15.61773 -15.39616 -15.11030 -14.83002 -14.55236 -14.42785 -14.18754 -14.13355 -13.90788 -13.59868 -13.45724 -13.18120 -12.96317 -12.87885 -12.80291 -12.69530 -12.12680 -12.08358 -11.97675 -11.81713 -11.53790 -11.17842 -11.03301 -10.98481 -10.72421 -10.48992 -10.39947 -10.24050 -9.08617 -7.97623 -5.28447 -0.42969 -0.23734 1.44076 1.49801 1.50782 1.60540 1.83341 2.23249 2.48426 2.57501 2.70529 2.78063 3.10988 3.37874 3.59580 3.68862 3.77428 3.84904 3.87192 4.08251 4.11046 4.12869 4.19915 4.24232 4.43983 4.53973 4.68065 4.77932 4.83201 4.83781 4.87319 4.98732 5.08202 5.08709 5.09704 5.11631 5.18882 5.34155 5.49224 5.55063 5.79374 6.21673 6.36467 6.44790 6.86721 7.11883 7.29781 7.95566 8.21750 9.25783 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.003288 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.231006 B = 8514.770499 C =10751.645486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.098 4.098 3 C -0.115 4.115 4 C -0.129 4.129 5 C -0.202 4.202 6 H 0.134 0.866 7 C 0.545 3.455 8 O -0.564 6.564 9 N -0.713 5.713 10 C 0.202 3.798 11 C 0.318 3.682 12 N -0.536 5.536 13 C 0.364 3.636 14 O -0.474 6.474 15 C -0.211 4.211 16 C 0.183 3.817 17 C 0.198 3.802 18 N -0.733 5.733 19 C -0.245 4.245 20 H 0.083 0.917 21 C -0.070 4.070 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.296 1.296 27 N -0.516 5.516 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.408 0.592 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.430 0.570 40 H 0.175 0.825 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.373 0.627 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -1.039 -15.805 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.099 4.099 3 C -0.172 4.172 4 C -0.166 4.166 5 C -0.223 4.223 6 H 0.152 0.848 7 C 0.334 3.666 8 O -0.443 6.443 9 N -0.365 5.365 10 C 0.077 3.923 11 C 0.048 3.952 12 N -0.262 5.262 13 C 0.176 3.824 14 O -0.285 6.285 15 C -0.235 4.235 16 C 0.039 3.961 17 C 0.071 3.929 18 N -0.377 5.377 19 C -0.377 4.377 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.617 5.617 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.223 1.223 27 N -0.233 5.233 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.113 0.887 36 H 0.242 0.758 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.294 0.706 40 H 0.193 0.807 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.205 0.795 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.512 -0.676 -15.858 18.504 hybrid contribution 2.056 -0.331 1.010 2.314 sum -7.457 -1.007 -14.848 16.645 Atomic orbital electron populations 1.21280 0.91663 1.01316 1.01364 1.21716 0.95394 0.91621 1.01175 1.21421 1.00721 0.92647 1.02408 1.23313 1.03520 1.00498 0.89317 1.22404 1.02321 1.00682 0.96922 0.84770 1.20095 0.88066 0.80857 0.77616 1.90687 1.15726 1.75364 1.62570 1.45792 1.10721 1.27141 1.52844 1.19773 0.90280 0.86299 0.95943 1.22862 0.94072 0.91195 0.87029 1.67761 1.14714 1.03179 1.40571 1.19436 0.89536 0.84902 0.88509 1.84670 1.47491 1.28558 1.67748 1.23082 1.03481 1.00376 0.96580 1.21902 0.88664 0.88610 0.96907 1.19763 0.89642 0.95750 0.87742 1.42292 1.29809 1.59821 1.05730 1.19662 1.06808 1.24410 0.86778 0.89882 1.25561 0.99455 1.01081 1.00140 1.69820 1.24533 1.41089 1.26287 0.85054 0.77914 0.77134 0.79496 1.18818 1.21883 1.22318 1.68118 1.13103 1.32348 1.09743 0.93585 0.91524 0.93154 0.90853 0.90562 0.92419 0.85421 0.88664 0.75756 0.88251 0.89245 0.70593 0.80721 0.94056 0.91678 0.79520 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 8.09 71.98 0.58 -1.55 16 2 C -0.10 -1.83 2.70 -52.18 -0.14 -1.97 16 3 C -0.12 -1.66 9.85 71.98 0.71 -0.95 16 4 C -0.13 -2.09 9.52 30.59 0.29 -1.80 16 5 C -0.20 -4.16 5.91 -11.54 -0.07 -4.23 16 6 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 7 C 0.55 14.42 7.59 87.66 0.67 15.08 16 8 O -0.56 -17.88 13.10 -3.03 -0.04 -17.92 16 9 N -0.71 -18.29 5.55 -466.77 -2.59 -20.88 16 10 C 0.20 5.51 6.11 85.63 0.52 6.03 16 11 C 0.32 9.56 7.01 138.76 0.97 10.53 16 12 N -0.54 -15.32 10.36 -300.69 -3.12 -18.44 16 13 C 0.36 9.51 7.83 84.83 0.66 10.18 16 14 O -0.47 -9.44 13.58 -88.22 -1.20 -10.64 16 15 C -0.21 -5.87 9.79 22.54 0.22 -5.65 16 16 C 0.18 6.19 6.18 42.45 0.26 6.45 16 17 C 0.20 7.55 6.61 85.63 0.57 8.12 16 18 N -0.73 -35.71 5.59 -347.17 -1.94 -37.65 16 19 C -0.25 -13.08 9.99 84.04 0.84 -12.25 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 22 N -0.97 -57.15 13.06 21.65 0.28 -56.87 16 23 Si 0.98 44.52 29.55 68.60 2.03 46.54 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 27 N -0.52 -17.81 10.27 -176.22 -1.81 -19.62 16 28 H 0.05 1.19 7.26 -2.39 -0.02 1.17 16 29 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 30 H 0.05 1.20 7.01 -2.39 -0.02 1.19 16 31 H 0.07 0.86 7.90 -2.39 -0.02 0.84 16 32 H 0.08 0.93 7.92 -2.39 -0.02 0.91 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.13 1.46 8.05 -2.39 -0.02 1.44 16 35 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 36 H 0.41 9.87 8.46 -92.71 -0.78 9.08 16 37 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 39 H 0.43 4.15 9.06 -74.06 -0.67 3.48 16 40 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 43 H 0.37 19.66 7.66 -92.70 -0.71 18.95 16 44 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -70.02 377.35 -2.94 -72.96 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -1.11 Total: 37.90 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 6.56 Total: 24.61 kcal Atomic # 7 Polarization: -144.28 SS G_CDS: -9.17 Total: -153.45 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.24 Total: -28.56 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -70.02 -2.94 -72.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689137225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.437 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds