Wall clock time and date at job start Tue Mar 31 2020 12:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00393 * 2 1 4 4 H 1.48501 * 109.47215 * 240.00267 * 3 2 1 5 5 H 1.48500 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47463 * 120.00061 * 3 2 1 7 7 C 1.38820 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99960 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99727 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.49490 * 304.93774 * 11 10 9 13 13 C 1.53036 * 109.52462 * 184.85680 * 11 10 9 14 14 C 1.53039 * 109.53682 * 178.67031 * 13 11 10 15 15 C 1.52762 * 109.38733 * 61.23866 * 14 13 11 16 16 N 1.46926 * 109.00673 * 305.58822 * 15 14 13 17 17 C 1.34771 * 120.63082 * 233.58328 * 16 15 14 18 18 O 1.21677 * 120.00375 * 179.85727 * 17 16 15 19 19 C 1.46811 * 119.99645 * 359.85727 * 17 16 15 20 20 C 1.36354 * 125.84508 * 150.45525 * 19 17 16 21 21 C 1.41309 * 107.00867 * 179.73409 * 20 19 17 22 22 C 1.47389 * 126.46145 * 180.25943 * 21 20 19 23 23 N 1.34784 * 120.00009 * 180.02562 * 22 21 20 24 24 O 1.21609 * 120.00264 * 0.02562 * 22 21 20 25 25 C 1.38200 * 107.07274 * 0.26457 * 21 20 19 26 26 N 1.34259 * 108.40009 * 359.97438 * 25 21 20 27 27 H 0.97001 * 125.39413 * 180.02562 * 26 25 21 28 28 C 1.46927 * 118.73750 * 53.30991 * 16 15 14 29 29 H 0.97001 * 119.99702 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00430 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46892 * 60.00459 * 10 9 7 32 32 H 1.09000 * 109.47038 * 300.00029 * 10 9 7 33 33 H 1.09000 * 109.45801 * 298.69057 * 13 11 10 34 34 H 1.08998 * 109.46190 * 58.66072 * 13 11 10 35 35 H 1.09003 * 109.49656 * 181.32032 * 14 13 11 36 36 H 1.09005 * 109.49585 * 301.37445 * 14 13 11 37 37 H 1.08996 * 109.50434 * 185.70438 * 15 14 13 38 38 H 1.09001 * 109.42750 * 65.42128 * 15 14 13 39 39 H 1.08001 * 126.50024 * 359.97438 * 20 19 17 40 40 H 0.97003 * 119.99800 * 359.97438 * 23 22 21 41 41 H 0.96996 * 120.00019 * 180.02562 * 23 22 21 42 42 H 1.08011 * 125.80306 * 179.97438 * 25 21 20 43 43 H 1.08999 * 109.58677 * 66.42862 * 28 16 15 44 44 H 1.09000 * 109.58608 * 186.71276 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0636 -4.8198 0.0022 12 1 0.3803 -4.7137 0.8448 13 6 1.8236 -6.1425 0.1244 14 6 0.8275 -7.3038 0.1584 15 6 0.0274 -7.3239 -1.1427 16 7 -0.5889 -6.0057 -1.3459 17 6 -1.9149 -5.8930 -1.5590 18 8 -2.4137 -4.7954 -1.7232 19 6 -2.7575 -7.0948 -1.5928 20 6 -4.0722 -7.1584 -1.2369 21 6 -4.4880 -8.4953 -1.4282 22 6 -5.8357 -9.0377 -1.1792 23 7 -6.0901 -10.3415 -1.4070 24 8 -6.7181 -8.3088 -0.7682 25 6 -3.3926 -9.1984 -1.8926 26 7 -2.3546 -8.3521 -1.9867 27 1 -1.4632 -8.5876 -2.2880 28 6 0.2670 -4.8121 -1.3063 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 0.0023 31 1 2.6852 -3.7142 0.8912 32 1 2.6839 -3.7150 -0.8888 33 1 2.4887 -6.2594 -0.7313 34 1 2.4105 -6.1406 1.0428 35 1 1.3683 -8.2438 0.2690 36 1 0.1468 -7.1747 0.9999 37 1 -0.7502 -8.0851 -1.0801 38 1 0.6945 -7.5476 -1.9752 39 1 -4.6816 -6.3410 -0.8805 40 1 -5.3863 -10.9229 -1.7352 41 1 -6.9771 -10.6984 -1.2435 42 1 -3.3745 -10.2501 -2.1382 43 1 0.9540 -4.8268 -2.1524 44 1 -0.3525 -3.9165 -1.3542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690429792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:03 Heat of formation + Delta-G solvation = -5.575884 kcal Electronic energy + Delta-G solvation = -26730.361928 eV Core-core repulsion = 22876.922686 eV Total energy + Delta-G solvation = -3853.439241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.05433 -39.85699 -38.93133 -37.58470 -35.02512 -33.93609 -33.04051 -31.86548 -31.56474 -30.15754 -29.40551 -25.78970 -25.67335 -23.80849 -23.12610 -22.38707 -21.32252 -20.56940 -19.97402 -19.74387 -18.23614 -17.16992 -16.94184 -16.87223 -16.22364 -15.73544 -15.53835 -14.93096 -14.73939 -14.67977 -14.31850 -13.99569 -13.91929 -13.67262 -13.53459 -13.35505 -13.02197 -12.95984 -12.66171 -12.51590 -12.38864 -11.57277 -11.20289 -11.03586 -10.84280 -10.69021 -10.45065 -10.35647 -10.31863 -10.06164 -9.94958 -9.91527 -9.59895 -9.38515 -8.84896 -8.76627 -8.53897 -6.87661 -5.69102 -2.99510 1.18618 1.63557 2.53384 2.80081 3.16133 3.35543 3.40711 3.48083 3.51929 3.54109 4.29430 4.40194 4.46642 4.61872 4.64656 4.72760 4.84410 4.94728 5.07314 5.15932 5.22704 5.48822 5.56588 5.62270 5.69522 5.71777 5.75148 5.86066 6.01477 6.06859 6.16064 6.17237 6.33369 6.39671 6.48933 6.53037 6.57356 6.74568 6.82262 6.85155 7.11258 7.34688 7.73983 8.10155 8.13630 8.48318 9.59157 10.16558 10.50674 11.52988 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.002727 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.482591 B =10266.517071 C =11411.756474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.108 4.108 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.089 3.911 16 N -0.609 5.609 17 C 0.581 3.419 18 O -0.508 6.508 19 C -0.044 4.044 20 C -0.052 4.052 21 C -0.234 4.234 22 C 0.593 3.407 23 N -0.857 5.857 24 O -0.542 6.542 25 C 0.060 3.940 26 N -0.526 5.526 27 H 0.425 0.575 28 C 0.121 3.879 29 H 0.257 0.743 30 H 0.385 0.615 31 H 0.022 0.978 32 H 0.019 0.981 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.159 0.841 40 H 0.397 0.603 41 H 0.403 0.597 42 H 0.180 0.820 43 H 0.068 0.932 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 -29.507 -4.787 30.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.128 4.128 12 H 0.094 0.906 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.035 4.035 16 N -0.342 5.342 17 C 0.368 3.632 18 O -0.382 6.382 19 C -0.155 4.155 20 C -0.077 4.077 21 C -0.244 4.244 22 C 0.380 3.620 23 N -0.420 5.420 24 O -0.419 6.419 25 C -0.081 4.081 26 N -0.126 5.126 27 H 0.268 0.732 28 C 0.000 4.000 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.176 0.824 40 H 0.225 0.775 41 H 0.234 0.766 42 H 0.197 0.803 43 H 0.086 0.914 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.080 -28.092 -4.670 28.644 hybrid contribution 0.687 0.146 -0.212 0.733 sum -2.393 -27.947 -4.882 28.470 Atomic orbital electron populations 1.69665 1.05049 1.25836 1.57090 1.24771 0.95501 0.97696 1.02888 0.86278 0.78498 0.83683 0.77745 1.21305 1.21679 1.21334 1.19141 0.90905 0.84168 1.43378 0.91300 1.42409 1.05956 0.99904 1.89523 1.20621 0.92903 0.85163 0.98005 1.21702 0.98032 0.95148 0.97873 0.90612 1.21521 0.97380 0.93647 1.02472 1.21816 0.98643 0.99392 0.97217 1.22057 0.97474 0.85104 0.98872 1.48119 1.06793 1.08131 1.71193 1.17146 0.81175 0.87292 0.77577 1.90948 1.72396 1.26147 1.48662 1.20195 0.95907 0.84935 1.14420 1.21106 0.91949 0.96281 0.98352 1.19570 0.93801 0.95331 1.15739 1.17418 0.86819 0.81610 0.76144 1.43676 1.16577 1.10369 1.71404 1.90848 1.46874 1.58387 1.45808 1.22391 0.86989 0.96214 1.02537 1.42525 1.12213 1.07924 1.49952 0.73185 1.21794 0.93211 0.87650 0.97328 0.93357 0.78039 0.96045 0.96293 0.91710 0.91302 0.90787 0.91237 0.90111 0.91048 0.82355 0.77513 0.76635 0.80331 0.91375 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.90 5.38 -59.90 -0.32 -19.22 16 10 C 0.16 3.18 5.66 -4.04 -0.02 3.16 16 11 C -0.11 -1.70 2.37 -90.50 -0.21 -1.91 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.26 5.17 -26.69 -0.14 -1.40 16 14 C -0.13 -1.15 6.06 -26.83 -0.16 -1.32 16 15 C 0.09 0.74 5.50 -3.93 -0.02 0.72 16 16 N -0.61 -8.07 2.98 -174.52 -0.52 -8.59 16 17 C 0.58 9.03 7.62 -12.80 -0.10 8.93 16 18 O -0.51 -10.49 16.40 5.21 0.09 -10.41 16 19 C -0.04 -0.53 6.30 -82.41 -0.52 -1.05 16 20 C -0.05 -0.68 10.49 -39.09 -0.41 -1.09 16 21 C -0.23 -2.34 6.13 -105.02 -0.64 -2.98 16 22 C 0.59 6.32 8.09 -12.53 -0.10 6.21 16 23 N -0.86 -4.52 8.86 30.43 0.27 -4.25 16 24 O -0.54 -8.49 17.76 5.27 0.09 -8.40 16 25 C 0.06 0.34 11.43 -16.50 -0.19 0.15 16 26 N -0.53 -3.62 4.64 -9.30 -0.04 -3.66 16 27 H 0.42 1.70 6.45 -40.82 -0.26 1.44 16 28 C 0.12 1.97 5.52 -3.71 -0.02 1.95 16 29 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 30 H 0.39 10.67 6.90 -40.82 -0.28 10.39 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.51 3.91 -51.93 -0.20 0.30 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 40 H 0.40 0.63 7.74 -40.82 -0.32 0.32 16 41 H 0.40 1.75 8.93 -40.82 -0.36 1.39 16 42 H 0.18 0.10 7.44 -52.48 -0.39 -0.29 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.11 2.22 6.21 -51.93 -0.32 1.90 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -39.50 360.82 -8.00 -47.50 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.91 Total: 8.33 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.79 Total: 3.79 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: 0.11 Total: -64.16 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.50 -8.00 -47.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690429792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.924 kcal (2) G-P(sol) polarization free energy of solvation -39.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds