Wall clock time and date at job start Tue Mar 31 2020 12:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00393 * 2 1 4 4 H 1.48501 * 109.47215 * 240.00267 * 3 2 1 5 5 H 1.48500 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47463 * 120.00061 * 3 2 1 7 7 C 1.38820 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99960 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99727 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.49490 * 304.93774 * 11 10 9 13 13 C 1.53036 * 109.52462 * 184.85680 * 11 10 9 14 14 C 1.53039 * 109.53682 * 178.67031 * 13 11 10 15 15 C 1.52762 * 109.38733 * 61.23866 * 14 13 11 16 16 N 1.46926 * 109.00673 * 305.58822 * 15 14 13 17 17 C 1.34771 * 120.63082 * 233.58328 * 16 15 14 18 18 O 1.21677 * 120.00375 * 179.85727 * 17 16 15 19 19 C 1.46811 * 119.99645 * 359.85727 * 17 16 15 20 20 C 1.36354 * 125.84508 * 150.45525 * 19 17 16 21 21 C 1.41309 * 107.00867 * 179.73409 * 20 19 17 22 22 C 1.47389 * 126.46145 * 180.25943 * 21 20 19 23 23 N 1.34784 * 120.00009 * 180.02562 * 22 21 20 24 24 O 1.21609 * 120.00264 * 0.02562 * 22 21 20 25 25 C 1.38200 * 107.07274 * 0.26457 * 21 20 19 26 26 N 1.34259 * 108.40009 * 359.97438 * 25 21 20 27 27 H 0.97001 * 125.39413 * 180.02562 * 26 25 21 28 28 C 1.46927 * 118.73750 * 53.30991 * 16 15 14 29 29 H 0.97001 * 119.99702 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00430 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46892 * 60.00459 * 10 9 7 32 32 H 1.09000 * 109.47038 * 300.00029 * 10 9 7 33 33 H 1.09000 * 109.45801 * 298.69057 * 13 11 10 34 34 H 1.08998 * 109.46190 * 58.66072 * 13 11 10 35 35 H 1.09003 * 109.49656 * 181.32032 * 14 13 11 36 36 H 1.09005 * 109.49585 * 301.37445 * 14 13 11 37 37 H 1.08996 * 109.50434 * 185.70438 * 15 14 13 38 38 H 1.09001 * 109.42750 * 65.42128 * 15 14 13 39 39 H 1.08001 * 126.50024 * 359.97438 * 20 19 17 40 40 H 0.97003 * 119.99800 * 359.97438 * 23 22 21 41 41 H 0.96996 * 120.00019 * 180.02562 * 23 22 21 42 42 H 1.08011 * 125.80306 * 179.97438 * 25 21 20 43 43 H 1.08999 * 109.58677 * 66.42862 * 28 16 15 44 44 H 1.09000 * 109.58608 * 186.71276 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6569 0.0016 11 6 1.0636 -4.8198 0.0022 12 1 0.3803 -4.7137 0.8448 13 6 1.8236 -6.1425 0.1244 14 6 0.8275 -7.3038 0.1584 15 6 0.0274 -7.3239 -1.1427 16 7 -0.5889 -6.0057 -1.3459 17 6 -1.9149 -5.8930 -1.5590 18 8 -2.4137 -4.7954 -1.7232 19 6 -2.7575 -7.0948 -1.5928 20 6 -4.0722 -7.1584 -1.2369 21 6 -4.4880 -8.4953 -1.4282 22 6 -5.8357 -9.0377 -1.1792 23 7 -6.0901 -10.3415 -1.4070 24 8 -6.7181 -8.3088 -0.7682 25 6 -3.3926 -9.1984 -1.8926 26 7 -2.3546 -8.3521 -1.9867 27 1 -1.4632 -8.5876 -2.2880 28 6 0.2670 -4.8121 -1.3063 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 0.0023 31 1 2.6852 -3.7142 0.8912 32 1 2.6839 -3.7150 -0.8888 33 1 2.4887 -6.2594 -0.7313 34 1 2.4105 -6.1406 1.0428 35 1 1.3683 -8.2438 0.2690 36 1 0.1468 -7.1747 0.9999 37 1 -0.7502 -8.0851 -1.0801 38 1 0.6945 -7.5476 -1.9752 39 1 -4.6816 -6.3410 -0.8805 40 1 -5.3863 -10.9229 -1.7352 41 1 -6.9771 -10.6984 -1.2435 42 1 -3.3745 -10.2501 -2.1382 43 1 0.9540 -4.8268 -2.1524 44 1 -0.3525 -3.9165 -1.3542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690429792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:02 Heat of formation + Delta-G solvation = -39.447324 kcal Electronic energy + Delta-G solvation = -26731.830704 eV Core-core repulsion = 22876.922686 eV Total energy + Delta-G solvation = -3854.908017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.87016 -40.91557 -39.78754 -38.84215 -36.68710 -34.73051 -34.50156 -33.15432 -32.49475 -31.60899 -30.48744 -27.34686 -26.78516 -25.04989 -24.36924 -23.36977 -22.60182 -21.50900 -20.96362 -20.61689 -19.26769 -18.97009 -17.85185 -17.64665 -17.21013 -16.74376 -16.67262 -16.57050 -15.87665 -15.64398 -15.44936 -15.35150 -15.12729 -14.78886 -14.75982 -14.40366 -14.26474 -14.08586 -13.96794 -13.77082 -13.39111 -13.04663 -12.87060 -12.67063 -12.23575 -12.11581 -11.95570 -11.88477 -11.64566 -11.36527 -11.22396 -11.15992 -10.95803 -10.62339 -10.19240 -9.83727 -9.37891 -9.02896 -7.95438 -5.26497 0.40702 0.76186 1.43901 1.48572 1.55028 1.70099 1.78246 2.24538 2.54618 2.55773 2.75470 3.37241 3.42750 3.67148 3.78189 3.86634 3.89311 4.02521 4.06965 4.16313 4.20706 4.30321 4.35009 4.51391 4.72542 4.74556 4.77657 4.82821 4.86996 4.88318 5.02263 5.08123 5.20127 5.32404 5.33982 5.38966 5.45198 5.49575 5.53633 5.99561 6.24469 6.25635 6.32811 6.63470 6.98132 7.29857 7.48444 8.06932 8.28369 9.27887 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.002727 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.482591 B =10266.517071 C =11411.756474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.979 3.021 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.158 3.842 11 C -0.096 4.096 12 H 0.046 0.954 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.080 3.920 16 N -0.602 5.602 17 C 0.573 3.427 18 O -0.582 6.582 19 C -0.060 4.060 20 C -0.080 4.080 21 C -0.266 4.266 22 C 0.589 3.411 23 N -0.826 5.826 24 O -0.610 6.610 25 C 0.126 3.874 26 N -0.504 5.504 27 H 0.445 0.555 28 C 0.128 3.872 29 H 0.250 0.750 30 H 0.369 0.631 31 H 0.027 0.973 32 H 0.031 0.969 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.420 0.580 41 H 0.411 0.589 42 H 0.252 0.748 43 H 0.081 0.919 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -34.869 -5.855 35.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.031 3.969 11 C -0.116 4.116 12 H 0.064 0.936 13 C -0.144 4.144 14 C -0.165 4.165 15 C -0.041 4.041 16 N -0.333 5.333 17 C 0.362 3.638 18 O -0.462 6.462 19 C -0.171 4.171 20 C -0.107 4.107 21 C -0.275 4.275 22 C 0.377 3.623 23 N -0.390 5.390 24 O -0.492 6.492 25 C -0.017 4.017 26 N -0.106 5.106 27 H 0.292 0.708 28 C 0.005 3.995 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.252 0.748 41 H 0.242 0.758 42 H 0.268 0.732 43 H 0.099 0.901 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.059 -33.603 -5.752 34.092 hybrid contribution -0.211 1.645 0.113 1.662 sum -0.152 -31.958 -5.639 32.452 Atomic orbital electron populations 1.69877 1.06996 1.26137 1.59437 1.25714 0.96342 1.01634 1.03730 0.85131 0.77055 0.78677 0.78409 1.19986 1.22515 1.20005 1.19654 0.91617 0.85279 1.41280 0.90065 1.42708 1.05522 1.01600 1.89456 1.20860 0.93577 0.84132 0.98314 1.21565 0.97008 0.96692 0.96309 0.93572 1.21516 0.97736 0.91331 1.03776 1.21833 0.97955 1.00154 0.96557 1.22540 0.98672 0.82572 1.00284 1.48168 1.05922 1.09344 1.69907 1.17720 0.81970 0.87562 0.76514 1.90903 1.73885 1.29204 1.52184 1.19382 0.94857 0.85843 1.16975 1.21009 0.92634 0.97418 0.99596 1.19553 0.95246 0.94335 1.18389 1.17607 0.86406 0.82746 0.75551 1.43374 1.17760 1.08556 1.69296 1.90819 1.48745 1.60419 1.49219 1.23323 0.83999 0.97961 0.96384 1.42396 1.13547 1.05800 1.48830 0.70770 1.21452 0.92717 0.87185 0.98124 0.94151 0.79919 0.95496 0.95134 0.89595 0.90621 0.86160 0.93012 0.87576 0.87284 0.86538 0.74782 0.75759 0.73228 0.90093 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.52 13.06 21.65 0.28 -64.24 16 2 C -0.08 -5.01 5.50 84.86 0.47 -4.55 16 3 Si 0.98 48.34 29.55 68.60 2.03 50.36 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -14.41 9.99 84.04 0.84 -13.57 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.75 -40.52 5.38 -343.43 -1.85 -42.37 16 10 C 0.16 6.30 5.66 86.38 0.49 6.79 16 11 C -0.10 -3.07 2.37 -10.71 -0.03 -3.10 16 12 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 13 C -0.11 -2.05 5.17 30.62 0.16 -1.89 16 14 C -0.13 -1.68 6.06 30.53 0.19 -1.49 16 15 C 0.08 1.01 5.50 86.22 0.47 1.49 16 16 N -0.60 -15.99 2.98 -824.29 -2.45 -18.44 16 17 C 0.57 19.07 7.62 86.49 0.66 19.73 16 18 O -0.58 -27.21 16.40 -4.28 -0.07 -27.28 16 19 C -0.06 -1.44 6.30 40.01 0.25 -1.19 16 20 C -0.08 -2.26 10.49 22.59 0.24 -2.02 16 21 C -0.27 -4.92 6.13 -20.12 -0.12 -5.04 16 22 C 0.59 12.08 8.09 86.65 0.70 12.78 16 23 N -0.83 -6.02 8.86 -175.90 -1.56 -7.58 16 24 O -0.61 -20.26 17.76 -4.06 -0.07 -20.33 16 25 C 0.13 0.73 11.43 84.31 0.96 1.69 16 26 N -0.50 -4.77 4.64 -183.35 -0.85 -5.62 16 27 H 0.44 0.81 6.45 -92.71 -0.60 0.21 16 28 C 0.13 4.35 5.52 86.36 0.48 4.83 16 29 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 30 H 0.37 22.12 6.90 -92.70 -0.64 21.48 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.11 0.78 3.91 -2.39 -0.01 0.77 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.42 -1.03 7.74 -92.71 -0.72 -1.75 16 41 H 0.41 2.48 8.93 -92.71 -0.83 1.66 16 42 H 0.25 -2.14 7.44 -2.91 -0.02 -2.16 16 43 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.05 2.23 6.21 -2.39 -0.01 2.22 16 Total: -1.00 -101.51 360.82 -0.49 -102.00 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -1.70 Total: 19.05 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 5.75 Total: 14.44 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -6.43 Total: -138.24 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.14 Total: -47.61 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.36 kcal Total: -101.51 -0.49 -102.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690429792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.553 kcal (2) G-P(sol) polarization free energy of solvation -101.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds