Wall clock time and date at job start Tue Mar 31 2020 12:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00295 * 2 1 4 4 H 1.48503 * 109.47104 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47548 * 119.99920 * 3 2 1 6 6 H 1.48499 * 109.47077 * 240.00173 * 3 2 1 7 7 C 1.38809 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00360 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47020 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.49979 * 55.06832 * 11 10 9 13 13 C 1.53047 * 109.49211 * 175.16177 * 11 10 9 14 14 C 1.53047 * 109.53457 * 181.31865 * 13 11 10 15 15 C 1.53188 * 109.31146 * 298.63234 * 14 13 11 16 16 N 1.46932 * 108.77396 * 54.63727 * 15 14 13 17 17 C 1.34775 * 120.62752 * 126.36698 * 16 15 14 18 18 O 1.21677 * 119.99855 * 179.78323 * 17 16 15 19 19 C 1.46806 * 120.00346 * 359.78767 * 17 16 15 20 20 C 1.36354 * 125.85112 * 210.15698 * 19 17 16 21 21 C 1.41306 * 107.00990 * 179.97438 * 20 19 17 22 22 C 1.47392 * 126.46147 * 180.02562 * 21 20 19 23 23 N 1.34770 * 120.00126 * 180.02562 * 22 21 20 24 24 O 1.21616 * 119.99682 * 0.02562 * 22 21 20 25 25 C 1.38203 * 107.07593 * 0.02562 * 21 20 19 26 26 N 1.34264 * 108.39835 * 359.76559 * 25 21 20 27 27 H 0.96998 * 125.39235 * 180.22524 * 26 25 21 28 28 C 1.46924 * 118.73859 * 306.39073 * 16 15 14 29 29 H 0.96996 * 120.00035 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99957 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.46640 * 299.99840 * 10 9 7 32 32 H 1.09002 * 109.46709 * 59.99775 * 10 9 7 33 33 H 1.09001 * 109.45830 * 301.33477 * 13 11 10 34 34 H 1.08994 * 109.46163 * 61.30088 * 13 11 10 35 35 H 1.08999 * 109.49089 * 178.68401 * 14 13 11 36 36 H 1.09002 * 109.52243 * 58.60114 * 14 13 11 37 37 H 1.08997 * 109.59206 * 294.85056 * 15 14 13 38 38 H 1.08999 * 109.70367 * 174.49105 * 15 14 13 39 39 H 1.07997 * 126.49238 * 359.97438 * 20 19 17 40 40 H 0.96996 * 120.00145 * 0.02562 * 23 22 21 41 41 H 0.97003 * 120.00300 * 180.02562 * 23 22 21 42 42 H 1.08004 * 125.80229 * 180.02562 * 25 21 20 43 43 H 1.09004 * 109.58528 * 293.81615 * 28 16 15 44 44 H 1.09000 * 109.69993 * 173.46556 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.3798 -4.7140 -0.8409 13 6 1.8244 -6.1421 -0.1205 14 6 0.8288 -7.3040 -0.1530 15 6 0.0306 -7.3240 1.1543 16 7 -0.5871 -6.0054 1.3513 17 6 -1.9130 -5.8934 1.5653 18 8 -2.4119 -4.7960 1.7310 19 6 -2.7554 -7.0952 1.5985 20 6 -4.0672 -7.1614 1.2323 21 6 -4.4820 -8.4990 1.4207 22 6 -5.8251 -9.0452 1.1557 23 7 -6.0794 -10.3489 1.3836 24 8 -6.7038 -8.3193 0.7314 25 6 -3.3908 -9.1986 1.9003 26 7 -2.3546 -8.3507 2.0006 27 1 -1.4652 -8.5845 2.3091 28 6 0.2681 -4.8114 1.3102 29 1 -0.4850 -0.8400 0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6846 -3.7145 -0.8894 32 1 2.6847 -3.7145 0.8905 33 1 2.4108 -6.1405 -1.0394 34 1 2.4901 -6.2582 0.7347 35 1 1.3700 -8.2437 -0.2632 36 1 0.1470 -7.1761 -0.9938 37 1 0.6987 -7.5426 1.9872 38 1 -0.7461 -8.0867 1.0990 39 1 -4.6741 -6.3460 0.8674 40 1 -5.3786 -10.9278 1.7223 41 1 -6.9632 -10.7085 1.2088 42 1 -3.3733 -10.2497 2.1480 43 1 0.9557 -4.8252 2.1559 44 1 -0.3501 -3.9149 1.3564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690429793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:06 Heat of formation + Delta-G solvation = -5.685529 kcal Electronic energy + Delta-G solvation = -26782.003448 eV Core-core repulsion = 22928.559452 eV Total energy + Delta-G solvation = -3853.443996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10184 -39.92353 -38.96940 -37.66463 -35.22926 -33.97029 -33.22956 -31.93749 -31.61863 -30.13164 -29.31829 -25.84646 -25.50111 -23.79362 -23.14670 -22.43675 -21.51730 -20.62859 -20.02438 -19.80978 -18.29391 -17.24895 -17.08421 -16.92292 -16.30524 -15.80022 -15.65446 -15.00309 -14.76493 -14.64755 -14.45270 -14.06685 -13.96874 -13.83368 -13.54451 -13.43986 -13.21616 -13.07418 -12.70340 -12.56828 -12.51603 -11.73532 -11.28837 -10.90762 -10.73392 -10.67276 -10.54634 -10.35006 -10.29388 -10.05570 -9.97662 -9.91640 -9.43239 -9.11048 -8.88118 -8.81114 -8.60288 -6.95791 -6.03311 -3.04279 1.14013 1.58950 2.48302 2.72571 3.10156 3.32082 3.36186 3.55102 3.59315 3.77327 4.23175 4.36264 4.41061 4.58911 4.66055 4.68584 4.80058 4.90265 4.99782 5.07545 5.15505 5.42436 5.49058 5.59187 5.64708 5.68344 5.69308 5.77534 5.93407 5.94976 6.01602 6.11173 6.24326 6.34118 6.35605 6.47708 6.50385 6.65568 6.75615 6.77499 7.08288 7.26476 7.84890 8.05455 8.07303 8.82268 9.28786 10.15034 10.29423 11.44899 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.002732 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.361880 B =10246.505153 C =11374.332434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.045 4.045 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.336 4.336 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.167 3.833 11 C -0.109 4.109 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.088 3.912 16 N -0.609 5.609 17 C 0.582 3.418 18 O -0.510 6.510 19 C -0.045 4.045 20 C -0.051 4.051 21 C -0.234 4.234 22 C 0.593 3.407 23 N -0.856 5.856 24 O -0.542 6.542 25 C 0.061 3.939 26 N -0.526 5.526 27 H 0.425 0.575 28 C 0.122 3.878 29 H 0.257 0.743 30 H 0.368 0.632 31 H 0.023 0.977 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.159 0.841 40 H 0.397 0.603 41 H 0.403 0.597 42 H 0.180 0.820 43 H 0.069 0.931 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 -29.701 4.839 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.243 4.243 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.467 4.467 8 H 0.082 0.918 9 N -0.391 5.391 10 C 0.039 3.961 11 C -0.129 4.129 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.170 4.170 15 C -0.035 4.035 16 N -0.342 5.342 17 C 0.369 3.631 18 O -0.384 6.384 19 C -0.156 4.156 20 C -0.076 4.076 21 C -0.244 4.244 22 C 0.380 3.620 23 N -0.420 5.420 24 O -0.419 6.419 25 C -0.080 4.080 26 N -0.126 5.126 27 H 0.268 0.732 28 C 0.001 3.999 29 H 0.068 0.932 30 H 0.202 0.798 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.176 0.824 40 H 0.225 0.775 41 H 0.234 0.766 42 H 0.197 0.803 43 H 0.087 0.913 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.680 -26.749 4.715 27.293 hybrid contribution 0.483 -2.520 0.226 2.576 sum -2.197 -29.269 4.941 29.765 Atomic orbital electron populations 1.70857 1.06006 1.28688 1.52991 1.25792 0.97077 1.01018 1.00382 0.83240 0.74180 0.75674 0.75747 1.21004 1.22307 1.22333 1.19986 0.91919 0.85820 1.49006 0.91845 1.42420 1.04956 1.00911 1.90766 1.20555 0.92788 0.84639 0.98137 1.21723 0.98048 0.95350 0.97768 0.90728 1.21516 0.97392 0.93528 1.02550 1.21886 0.98619 0.99376 0.97120 1.22155 0.97498 0.84991 0.98875 1.48113 1.06778 1.08103 1.71245 1.17157 0.81153 0.87333 0.77472 1.90938 1.72435 1.26256 1.48757 1.20158 0.95973 0.84986 1.14436 1.21104 0.91925 0.96278 0.98312 1.19575 0.94026 0.95315 1.15490 1.17409 0.86707 0.81617 0.76268 1.43670 1.17066 1.10403 1.70853 1.90852 1.46925 1.58582 1.45537 1.22402 0.87058 0.96205 1.02365 1.42511 1.12394 1.07972 1.49741 0.73196 1.21756 0.93159 0.87579 0.97416 0.93163 0.79813 0.95947 0.96188 0.91248 0.91647 0.90710 0.91212 0.90979 0.90024 0.82356 0.77507 0.76604 0.80279 0.91284 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.38 13.70 55.49 0.76 -29.62 16 2 C -0.04 -1.34 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 26.69 29.92 -169.99 -5.09 21.61 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.34 -9.77 9.99 -15.06 -0.15 -9.92 16 8 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.74 -19.28 5.37 -59.91 -0.32 -19.60 16 10 C 0.17 3.34 5.65 -4.04 -0.02 3.32 16 11 C -0.11 -1.72 2.38 -90.50 -0.21 -1.94 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 13 C -0.11 -1.26 5.17 -26.68 -0.14 -1.39 16 14 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 15 C 0.09 0.73 5.55 -3.71 -0.02 0.71 16 16 N -0.61 -7.99 2.97 -174.27 -0.52 -8.51 16 17 C 0.58 8.94 7.62 -12.80 -0.10 8.84 16 18 O -0.51 -10.41 16.41 5.21 0.09 -10.32 16 19 C -0.04 -0.53 6.29 -82.41 -0.52 -1.05 16 20 C -0.05 -0.66 10.49 -39.09 -0.41 -1.07 16 21 C -0.23 -2.31 6.13 -105.02 -0.64 -2.95 16 22 C 0.59 6.25 8.09 -12.54 -0.10 6.15 16 23 N -0.86 -4.44 8.86 30.42 0.27 -4.17 16 24 O -0.54 -8.43 17.76 5.26 0.09 -8.34 16 25 C 0.06 0.34 11.43 -16.50 -0.19 0.15 16 26 N -0.53 -3.55 4.64 -9.30 -0.04 -3.60 16 27 H 0.42 1.65 6.48 -40.82 -0.26 1.39 16 28 C 0.12 1.97 5.51 -3.72 -0.02 1.95 16 29 H 0.26 8.29 6.77 -40.82 -0.28 8.01 16 30 H 0.37 9.96 5.72 -40.82 -0.23 9.73 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.50 3.90 -51.93 -0.20 0.30 16 39 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.40 0.59 7.74 -40.82 -0.32 0.28 16 41 H 0.40 1.72 8.93 -40.82 -0.36 1.36 16 42 H 0.18 0.08 7.44 -52.48 -0.39 -0.31 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 2.10 6.21 -51.93 -0.32 1.78 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -40.69 359.18 -7.94 -48.63 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.80 Total: 8.45 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.79 Total: 0.06 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: 0.15 Total: -65.49 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.18 Total: -18.66 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.09 Total: 21.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -40.69 -7.94 -48.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690429793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.941 kcal (2) G-P(sol) polarization free energy of solvation -40.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds