Wall clock time and date at job start Tue Mar 31 2020 12:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00295 * 2 1 4 4 H 1.48503 * 109.47104 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47548 * 119.99920 * 3 2 1 6 6 H 1.48499 * 109.47077 * 240.00173 * 3 2 1 7 7 C 1.38809 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00360 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47020 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.49979 * 55.06832 * 11 10 9 13 13 C 1.53047 * 109.49211 * 175.16177 * 11 10 9 14 14 C 1.53047 * 109.53457 * 181.31865 * 13 11 10 15 15 C 1.53188 * 109.31146 * 298.63234 * 14 13 11 16 16 N 1.46932 * 108.77396 * 54.63727 * 15 14 13 17 17 C 1.34775 * 120.62752 * 126.36698 * 16 15 14 18 18 O 1.21677 * 119.99855 * 179.78323 * 17 16 15 19 19 C 1.46806 * 120.00346 * 359.78767 * 17 16 15 20 20 C 1.36354 * 125.85112 * 210.15698 * 19 17 16 21 21 C 1.41306 * 107.00990 * 179.97438 * 20 19 17 22 22 C 1.47392 * 126.46147 * 180.02562 * 21 20 19 23 23 N 1.34770 * 120.00126 * 180.02562 * 22 21 20 24 24 O 1.21616 * 119.99682 * 0.02562 * 22 21 20 25 25 C 1.38203 * 107.07593 * 0.02562 * 21 20 19 26 26 N 1.34264 * 108.39835 * 359.76559 * 25 21 20 27 27 H 0.96998 * 125.39235 * 180.22524 * 26 25 21 28 28 C 1.46924 * 118.73859 * 306.39073 * 16 15 14 29 29 H 0.96996 * 120.00035 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99957 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.46640 * 299.99840 * 10 9 7 32 32 H 1.09002 * 109.46709 * 59.99775 * 10 9 7 33 33 H 1.09001 * 109.45830 * 301.33477 * 13 11 10 34 34 H 1.08994 * 109.46163 * 61.30088 * 13 11 10 35 35 H 1.08999 * 109.49089 * 178.68401 * 14 13 11 36 36 H 1.09002 * 109.52243 * 58.60114 * 14 13 11 37 37 H 1.08997 * 109.59206 * 294.85056 * 15 14 13 38 38 H 1.08999 * 109.70367 * 174.49105 * 15 14 13 39 39 H 1.07997 * 126.49238 * 359.97438 * 20 19 17 40 40 H 0.96996 * 120.00145 * 0.02562 * 23 22 21 41 41 H 0.97003 * 120.00300 * 180.02562 * 23 22 21 42 42 H 1.08004 * 125.80229 * 180.02562 * 25 21 20 43 43 H 1.09004 * 109.58528 * 293.81615 * 28 16 15 44 44 H 1.09000 * 109.69993 * 173.46556 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.3798 -4.7140 -0.8409 13 6 1.8244 -6.1421 -0.1205 14 6 0.8288 -7.3040 -0.1530 15 6 0.0306 -7.3240 1.1543 16 7 -0.5871 -6.0054 1.3513 17 6 -1.9130 -5.8934 1.5653 18 8 -2.4119 -4.7960 1.7310 19 6 -2.7554 -7.0952 1.5985 20 6 -4.0672 -7.1614 1.2323 21 6 -4.4820 -8.4990 1.4207 22 6 -5.8251 -9.0452 1.1557 23 7 -6.0794 -10.3489 1.3836 24 8 -6.7038 -8.3193 0.7314 25 6 -3.3908 -9.1986 1.9003 26 7 -2.3546 -8.3507 2.0006 27 1 -1.4652 -8.5845 2.3091 28 6 0.2681 -4.8114 1.3102 29 1 -0.4850 -0.8400 0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6846 -3.7145 -0.8894 32 1 2.6847 -3.7145 0.8905 33 1 2.4108 -6.1405 -1.0394 34 1 2.4901 -6.2582 0.7347 35 1 1.3700 -8.2437 -0.2632 36 1 0.1470 -7.1761 -0.9938 37 1 0.6987 -7.5426 1.9872 38 1 -0.7461 -8.0867 1.0990 39 1 -4.6741 -6.3460 0.8674 40 1 -5.3786 -10.9278 1.7223 41 1 -6.9632 -10.7085 1.2088 42 1 -3.3733 -10.2497 2.1480 43 1 0.9557 -4.8252 2.1559 44 1 -0.3501 -3.9149 1.3564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690429793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:05 Heat of formation + Delta-G solvation = -40.504254 kcal Electronic energy + Delta-G solvation = -26783.513301 eV Core-core repulsion = 22928.559452 eV Total energy + Delta-G solvation = -3854.953849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.91013 -40.97984 -39.81723 -38.93068 -36.96431 -34.84398 -34.59917 -33.17238 -32.51732 -31.53124 -30.48010 -27.16951 -26.81709 -25.13744 -24.44437 -23.42775 -22.77222 -21.55803 -21.02364 -20.65266 -19.39000 -19.13332 -17.91416 -17.68857 -17.30147 -16.87035 -16.74730 -16.41445 -15.97297 -15.89073 -15.66657 -15.41791 -15.15867 -14.82174 -14.80740 -14.47269 -14.28296 -14.16969 -14.07501 -13.86867 -13.42489 -13.08062 -12.72726 -12.55966 -12.19572 -11.97782 -11.94903 -11.81229 -11.62903 -11.33368 -11.22179 -11.15705 -10.97255 -10.64424 -10.22929 -9.90528 -9.42013 -9.16318 -8.43964 -5.38487 0.36188 0.73281 1.54616 1.63105 1.66486 1.73168 1.82617 2.19354 2.53003 2.69847 2.72818 3.36191 3.36932 3.57793 3.68258 3.76747 3.84011 3.95392 4.00047 4.03741 4.12419 4.24026 4.27086 4.42103 4.61708 4.66173 4.71228 4.75072 4.78725 4.84590 4.91032 5.00851 5.10982 5.23320 5.28885 5.32754 5.39184 5.49183 5.54061 5.97542 6.19189 6.28559 6.41759 6.61325 6.91011 7.03889 7.46331 7.93659 8.07109 9.07062 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.002732 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.361880 B =10246.505153 C =11374.332434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.111 4.111 3 Si 1.133 2.867 4 H -0.295 1.295 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.073 0.927 9 N -0.761 5.761 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.046 0.954 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.080 3.920 16 N -0.602 5.602 17 C 0.574 3.426 18 O -0.583 6.583 19 C -0.061 4.061 20 C -0.079 4.079 21 C -0.266 4.266 22 C 0.589 3.411 23 N -0.826 5.826 24 O -0.609 6.609 25 C 0.127 3.873 26 N -0.504 5.504 27 H 0.445 0.555 28 C 0.129 3.871 29 H 0.239 0.761 30 H 0.356 0.644 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.420 0.580 41 H 0.411 0.589 42 H 0.252 0.748 43 H 0.081 0.919 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -35.015 5.930 35.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.302 4.302 3 Si 0.956 3.044 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.091 0.909 9 N -0.406 5.406 10 C 0.037 3.963 11 C -0.116 4.116 12 H 0.064 0.936 13 C -0.143 4.143 14 C -0.164 4.164 15 C -0.041 4.041 16 N -0.333 5.333 17 C 0.363 3.637 18 O -0.463 6.463 19 C -0.172 4.172 20 C -0.106 4.106 21 C -0.275 4.275 22 C 0.377 3.623 23 N -0.390 5.390 24 O -0.492 6.492 25 C -0.016 4.016 26 N -0.106 5.106 27 H 0.292 0.708 28 C 0.006 3.994 29 H 0.049 0.951 30 H 0.187 0.813 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.252 0.748 41 H 0.243 0.757 42 H 0.268 0.732 43 H 0.099 0.901 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.438 -32.229 5.821 32.753 hybrid contribution -0.410 -1.038 -0.105 1.121 sum 0.028 -33.267 5.717 33.754 Atomic orbital electron populations 1.70994 1.07465 1.27668 1.56300 1.27421 0.97015 1.05226 1.00505 0.82598 0.73297 0.71099 0.77399 1.22163 1.19927 1.19939 1.20431 0.92511 0.87032 1.46703 0.90942 1.42732 1.04695 1.02445 1.90740 1.20792 0.93516 0.83786 0.98225 1.21579 0.96979 0.96739 0.96329 0.93553 1.21518 0.97769 0.91268 1.03794 1.21901 0.97918 1.00076 0.96511 1.22640 0.98699 0.82490 1.00238 1.48161 1.05917 1.09264 1.69993 1.17730 0.81926 0.87612 0.76418 1.90895 1.73899 1.29274 1.52219 1.19352 0.94936 0.85886 1.16984 1.21009 0.92611 0.97420 0.99532 1.19557 0.95467 0.94319 1.18141 1.17600 0.86300 0.82752 0.75667 1.43371 1.18217 1.08591 1.68777 1.90823 1.48812 1.60609 1.48948 1.23335 0.84050 0.97938 0.96246 1.42384 1.13719 1.05857 1.48627 0.70784 1.21418 0.92690 0.87213 0.98089 0.95061 0.81253 0.95640 0.95262 0.90634 0.89592 0.86085 0.92939 0.87262 0.87447 0.86517 0.74775 0.75735 0.73185 0.90117 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.42 13.70 21.65 0.30 -66.12 16 2 C -0.11 -6.88 5.50 84.86 0.47 -6.41 16 3 Si 1.13 54.55 29.92 68.60 2.05 56.60 16 4 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.34 -19.95 9.99 84.03 0.84 -19.11 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.76 -41.39 5.37 -343.45 -1.85 -43.24 16 10 C 0.16 6.64 5.65 86.38 0.49 7.13 16 11 C -0.10 -3.10 2.38 -10.72 -0.03 -3.12 16 12 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 13 C -0.11 -2.07 5.17 30.63 0.16 -1.91 16 14 C -0.13 -1.66 6.08 30.67 0.19 -1.47 16 15 C 0.08 1.00 5.55 86.36 0.48 1.48 16 16 N -0.60 -15.83 2.97 -823.49 -2.45 -18.27 16 17 C 0.57 18.87 7.62 86.48 0.66 19.53 16 18 O -0.58 -26.93 16.41 -4.27 -0.07 -27.00 16 19 C -0.06 -1.45 6.29 40.01 0.25 -1.20 16 20 C -0.08 -2.21 10.49 22.58 0.24 -1.98 16 21 C -0.27 -4.84 6.13 -20.12 -0.12 -4.97 16 22 C 0.59 11.95 8.09 86.65 0.70 12.65 16 23 N -0.83 -5.87 8.86 -175.91 -1.56 -7.43 16 24 O -0.61 -20.14 17.76 -4.08 -0.07 -20.21 16 25 C 0.13 0.70 11.43 84.31 0.96 1.67 16 26 N -0.50 -4.64 4.64 -183.35 -0.85 -5.49 16 27 H 0.44 0.71 6.48 -92.71 -0.60 0.11 16 28 C 0.13 4.36 5.51 86.36 0.48 4.83 16 29 H 0.24 16.63 6.77 -92.71 -0.63 16.01 16 30 H 0.36 20.93 5.72 -92.71 -0.53 20.40 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.11 0.76 3.90 -2.39 -0.01 0.75 16 39 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 40 H 0.42 -1.11 7.74 -92.71 -0.72 -1.83 16 41 H 0.41 2.42 8.93 -92.71 -0.83 1.59 16 42 H 0.25 -2.20 7.44 -2.91 -0.02 -2.22 16 43 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.05 2.10 6.21 -2.39 -0.01 2.08 16 Total: -1.00 -104.17 359.18 -0.19 -104.36 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -1.45 Total: 19.69 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.76 Total: 7.12 kcal Atomic # 7 Polarization: -134.15 SS G_CDS: -6.41 Total: -140.56 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.14 Total: -47.21 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 2.05 Total: 56.60 kcal Total: -104.17 -0.19 -104.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690429793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.853 kcal (2) G-P(sol) polarization free energy of solvation -104.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds