Wall clock time and date at job start Tue Mar 31 2020 12:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53776 * 113.61738 * 2 1 4 4 C 1.53782 * 87.08049 * 89.11732 * 3 2 1 5 5 C 1.50697 * 113.61613 * 139.98570 * 4 3 2 6 6 O 1.21280 * 119.99937 * 359.97438 * 5 4 3 7 7 N 1.34783 * 120.00199 * 180.02562 * 5 4 3 8 8 C 1.46490 * 119.99973 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47167 * 179.97438 * 8 7 5 10 10 N 1.31789 * 119.09648 * 269.98067 * 9 8 7 11 11 C 1.32799 * 120.71637 * 179.97438 * 10 9 8 12 12 O 1.35519 * 120.50861 * 179.97438 * 11 10 9 13 13 C 1.39416 * 118.97466 * 359.74609 * 11 10 9 14 14 C 1.38181 * 118.35119 * 0.51526 * 13 11 10 15 15 C 1.50697 * 120.41367 * 179.76229 * 14 13 11 16 16 N 1.46499 * 109.47276 * 94.71971 * 15 14 13 17 17 C 1.36935 * 119.99938 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 15 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17 25 25 N 1.31763 * 119.09108 * 90.00041 * 9 8 7 26 26 C 1.53776 * 87.07996 * 25.43259 * 4 3 2 27 27 H 1.08996 * 109.46997 * 60.00006 * 1 2 3 28 28 H 1.08994 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46606 * 299.99777 * 1 2 3 30 30 H 1.08999 * 112.84736 * 228.80331 * 2 1 3 31 31 H 1.09005 * 113.61265 * 334.57205 * 3 2 1 32 32 H 1.09000 * 113.61753 * 203.66366 * 3 2 1 33 33 H 1.09011 * 113.61462 * 270.80194 * 4 3 2 34 34 H 0.96998 * 119.99587 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47512 * 60.00127 * 8 7 5 36 36 H 1.08994 * 109.47511 * 300.00073 * 8 7 5 37 37 H 0.96702 * 114.00026 * 90.00217 * 12 11 10 38 38 H 1.08004 * 120.81960 * 180.27450 * 13 11 10 39 39 H 1.09004 * 109.47205 * 334.71946 * 15 14 13 40 40 H 1.09005 * 109.47240 * 214.72155 * 15 14 13 41 41 H 0.96999 * 119.99984 * 0.02562 * 16 15 14 42 42 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 43 43 H 1.09002 * 113.61328 * 89.12156 * 26 4 3 44 44 H 1.09000 * 113.61368 * 220.01673 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 2.0931 1.3467 1.5356 5 6 3.3079 1.9346 2.2060 6 8 4.2068 2.3963 1.5354 7 7 3.3961 1.9464 3.5509 8 6 4.5773 2.5174 4.2025 9 6 4.4280 2.4083 5.6981 10 7 3.8530 3.3934 6.3583 11 6 3.7044 3.3308 7.6764 12 8 3.1129 4.3464 8.3511 13 6 4.1618 2.2019 8.3548 14 6 4.7634 1.1957 7.6233 15 6 5.2795 -0.0425 8.3099 16 7 4.2575 -1.0909 8.2593 17 6 4.5030 -2.3141 8.8237 18 1 5.4516 -2.5076 9.3023 19 6 3.5343 -3.3074 8.7763 20 7 2.3802 -3.0735 8.1884 21 14 3.8695 -4.9763 9.5455 22 1 4.1394 -4.8076 10.9960 23 1 2.6854 -5.8533 9.3607 24 1 5.0502 -5.5950 8.8911 25 7 4.8763 1.3308 6.3098 26 6 2.1461 -0.1839 1.3969 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.9533 -0.6616 -0.7558 31 1 1.4946 2.1704 -0.4289 32 1 3.1592 1.4426 -0.4008 33 1 1.1574 1.7163 1.9556 34 1 2.6774 1.5767 4.0873 35 1 4.6751 3.5664 3.9231 36 1 5.4664 1.9726 3.8851 37 1 2.1544 4.2542 8.4398 38 1 4.0522 2.1178 9.4259 39 1 5.5118 0.1886 9.3495 40 1 6.1810 -0.3892 7.8045 41 1 3.4069 -0.9186 7.8261 42 1 1.7036 -3.7677 8.1549 43 1 3.1591 -0.5858 1.3781 44 1 1.4946 -0.7085 2.0959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691903163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:08 Heat of formation + Delta-G solvation = 0.975048 kcal Electronic energy + Delta-G solvation = -26157.192212 eV Core-core repulsion = 22304.037040 eV Total energy + Delta-G solvation = -3853.155172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28344 -40.44710 -38.16645 -37.72768 -35.65814 -34.60331 -33.14912 -31.85934 -30.72103 -29.92254 -27.72881 -26.59741 -25.81002 -24.76542 -23.52165 -22.79709 -21.53522 -20.76659 -18.98691 -18.69596 -17.94018 -17.62748 -17.28607 -16.31307 -15.91075 -15.54384 -15.34669 -15.08762 -14.78542 -14.63181 -13.94198 -13.87721 -13.76036 -13.38902 -13.18978 -13.02642 -12.88804 -12.67946 -12.56737 -12.40259 -12.14234 -11.93509 -11.45848 -11.14762 -11.09470 -10.87875 -10.66881 -10.51516 -10.44593 -10.42851 -10.21407 -9.90643 -9.80857 -9.40500 -9.22180 -9.17856 -9.02039 -7.10415 -5.88507 -3.19655 0.74337 0.97493 2.57256 2.93536 3.30844 3.38243 3.42866 3.43529 3.70258 3.87974 4.29046 4.31691 4.37820 4.51283 4.53123 4.56136 4.84741 4.95304 5.10715 5.20081 5.26879 5.28194 5.35008 5.44865 5.49399 5.55596 5.58930 5.65627 5.70284 5.74272 5.85380 5.91809 5.91923 6.05858 6.16027 6.21749 6.29828 6.32815 6.43492 6.99261 7.25696 7.39113 7.57989 8.07700 8.14057 8.27411 9.39914 9.90090 10.26002 11.33859 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008198 B = 0.003628 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.546499 B = 7716.404545 C =10289.497893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C -0.112 4.112 4 C -0.137 4.137 5 C 0.528 3.472 6 O -0.542 6.542 7 N -0.718 5.718 8 C 0.196 3.804 9 C 0.316 3.684 10 N -0.533 5.533 11 C 0.354 3.646 12 O -0.477 6.477 13 C -0.218 4.218 14 C 0.200 3.800 15 C 0.196 3.804 16 N -0.721 5.721 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.931 5.931 21 Si 0.912 3.088 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 N -0.491 5.491 26 C -0.120 4.120 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.404 0.596 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.407 0.593 38 H 0.156 0.844 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.088 0.912 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 11.655 -10.093 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.150 4.150 4 C -0.158 4.158 5 C 0.315 3.685 6 O -0.419 6.419 7 N -0.370 5.370 8 C 0.071 3.929 9 C 0.047 3.953 10 N -0.259 5.259 11 C 0.166 3.834 12 O -0.284 6.284 13 C -0.242 4.242 14 C 0.055 3.945 15 C 0.068 3.932 16 N -0.366 5.366 17 C -0.376 4.376 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.742 3.258 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 N -0.208 5.208 26 C -0.158 4.158 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.238 0.762 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.266 0.734 38 H 0.174 0.826 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.218 0.782 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.128 12.176 -11.329 16.767 hybrid contribution -1.136 -1.080 1.730 2.334 sum -3.265 11.096 -9.599 15.031 Atomic orbital electron populations 1.21619 0.93738 1.02057 1.01921 1.22317 0.95894 0.97648 0.97650 1.22895 1.02390 0.96791 0.92874 1.22786 0.96947 0.98231 0.97829 1.20526 0.88474 0.78127 0.81380 1.90683 1.40686 1.46654 1.63875 1.45860 1.21961 1.62374 1.06842 1.19847 0.89892 1.00701 0.82508 1.22745 0.90939 0.84820 0.96830 1.67676 1.18154 1.30830 1.09221 1.19373 0.91944 0.85467 0.86586 1.84704 1.26679 1.43956 1.73090 1.22972 1.03424 0.93762 1.04020 1.22193 0.88656 0.95164 0.88470 1.19726 0.93619 0.83776 0.96078 1.42140 1.15163 1.09967 1.69378 1.19168 0.99983 0.88919 1.29563 0.90792 1.24755 0.96203 0.98504 1.00978 1.69653 1.06098 1.33896 1.48268 0.86208 0.77032 0.83616 0.78952 1.21100 1.21608 1.21059 1.68198 1.18132 1.23440 1.11005 1.22935 1.02339 0.92978 0.97526 0.92327 0.92229 0.92413 0.90148 0.91065 0.88665 0.86990 0.76162 0.88871 0.88513 0.73388 0.82601 0.93757 0.93385 0.78159 0.93309 0.89381 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.59 37.16 0.36 -0.65 16 2 C -0.12 -1.00 4.55 -89.81 -0.41 -1.41 16 3 C -0.11 -1.07 7.00 -25.92 -0.18 -1.25 16 4 C -0.14 -1.38 3.80 -90.96 -0.35 -1.73 16 5 C 0.53 6.89 7.36 -10.98 -0.08 6.81 16 6 O -0.54 -8.76 15.90 5.56 0.09 -8.67 16 7 N -0.72 -9.11 5.55 -61.48 -0.34 -9.45 16 8 C 0.20 2.66 6.10 -5.20 -0.03 2.63 16 9 C 0.32 4.81 7.01 -157.23 -1.10 3.71 16 10 N -0.53 -7.97 10.36 -10.78 -0.11 -8.08 16 11 C 0.35 4.97 7.83 -16.70 -0.13 4.84 16 12 O -0.48 -5.43 13.58 -18.25 -0.25 -5.68 16 13 C -0.22 -3.20 9.79 -39.16 -0.38 -3.59 16 14 C 0.20 3.43 6.18 -82.32 -0.51 2.92 16 15 C 0.20 3.78 6.61 -5.20 -0.03 3.75 16 16 N -0.72 -17.51 5.59 -61.08 -0.34 -17.85 16 17 C -0.25 -6.58 9.99 -15.06 -0.15 -6.73 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 21 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 N -0.49 -8.46 10.27 -7.06 -0.07 -8.53 16 26 C -0.12 -1.20 7.19 -25.92 -0.19 -1.38 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 7.34 -51.93 -0.38 0.04 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.09 1.05 7.43 -51.93 -0.39 0.66 16 33 H 0.11 0.94 7.66 -51.92 -0.40 0.55 16 34 H 0.40 4.82 8.46 -40.82 -0.35 4.47 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.41 2.59 9.06 45.56 0.41 3.00 16 38 H 0.16 2.02 8.06 -52.48 -0.42 1.59 16 39 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.38 9.98 7.66 -40.82 -0.31 9.66 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 44 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -32.92 376.70 -8.53 -41.45 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.60 Total: 13.31 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -3.28 Total: 7.61 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -0.14 Total: -70.30 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.16 Total: -14.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.92 -8.53 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691903163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.423 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds