Wall clock time and date at job start Tue Mar 31 2020 12:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53776 * 113.61738 * 2 1 4 4 C 1.53782 * 87.08049 * 89.11732 * 3 2 1 5 5 C 1.50697 * 113.61613 * 139.98570 * 4 3 2 6 6 O 1.21280 * 119.99937 * 359.97438 * 5 4 3 7 7 N 1.34783 * 120.00199 * 180.02562 * 5 4 3 8 8 C 1.46490 * 119.99973 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47167 * 179.97438 * 8 7 5 10 10 N 1.31789 * 119.09648 * 269.98067 * 9 8 7 11 11 C 1.32799 * 120.71637 * 179.97438 * 10 9 8 12 12 O 1.35519 * 120.50861 * 179.97438 * 11 10 9 13 13 C 1.39416 * 118.97466 * 359.74609 * 11 10 9 14 14 C 1.38181 * 118.35119 * 0.51526 * 13 11 10 15 15 C 1.50697 * 120.41367 * 179.76229 * 14 13 11 16 16 N 1.46499 * 109.47276 * 94.71971 * 15 14 13 17 17 C 1.36935 * 119.99938 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 15 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17 25 25 N 1.31763 * 119.09108 * 90.00041 * 9 8 7 26 26 C 1.53776 * 87.07996 * 25.43259 * 4 3 2 27 27 H 1.08996 * 109.46997 * 60.00006 * 1 2 3 28 28 H 1.08994 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46606 * 299.99777 * 1 2 3 30 30 H 1.08999 * 112.84736 * 228.80331 * 2 1 3 31 31 H 1.09005 * 113.61265 * 334.57205 * 3 2 1 32 32 H 1.09000 * 113.61753 * 203.66366 * 3 2 1 33 33 H 1.09011 * 113.61462 * 270.80194 * 4 3 2 34 34 H 0.96998 * 119.99587 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47512 * 60.00127 * 8 7 5 36 36 H 1.08994 * 109.47511 * 300.00073 * 8 7 5 37 37 H 0.96702 * 114.00026 * 90.00217 * 12 11 10 38 38 H 1.08004 * 120.81960 * 180.27450 * 13 11 10 39 39 H 1.09004 * 109.47205 * 334.71946 * 15 14 13 40 40 H 1.09005 * 109.47240 * 214.72155 * 15 14 13 41 41 H 0.96999 * 119.99984 * 0.02562 * 16 15 14 42 42 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 43 43 H 1.09002 * 113.61328 * 89.12156 * 26 4 3 44 44 H 1.09000 * 113.61368 * 220.01673 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 2.0931 1.3467 1.5356 5 6 3.3079 1.9346 2.2060 6 8 4.2068 2.3963 1.5354 7 7 3.3961 1.9464 3.5509 8 6 4.5773 2.5174 4.2025 9 6 4.4280 2.4083 5.6981 10 7 3.8530 3.3934 6.3583 11 6 3.7044 3.3308 7.6764 12 8 3.1129 4.3464 8.3511 13 6 4.1618 2.2019 8.3548 14 6 4.7634 1.1957 7.6233 15 6 5.2795 -0.0425 8.3099 16 7 4.2575 -1.0909 8.2593 17 6 4.5030 -2.3141 8.8237 18 1 5.4516 -2.5076 9.3023 19 6 3.5343 -3.3074 8.7763 20 7 2.3802 -3.0735 8.1884 21 14 3.8695 -4.9763 9.5455 22 1 4.1394 -4.8076 10.9960 23 1 2.6854 -5.8533 9.3607 24 1 5.0502 -5.5950 8.8911 25 7 4.8763 1.3308 6.3098 26 6 2.1461 -0.1839 1.3969 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.9533 -0.6616 -0.7558 31 1 1.4946 2.1704 -0.4289 32 1 3.1592 1.4426 -0.4008 33 1 1.1574 1.7163 1.9556 34 1 2.6774 1.5767 4.0873 35 1 4.6751 3.5664 3.9231 36 1 5.4664 1.9726 3.8851 37 1 2.1544 4.2542 8.4398 38 1 4.0522 2.1178 9.4259 39 1 5.5118 0.1886 9.3495 40 1 6.1810 -0.3892 7.8045 41 1 3.4069 -0.9186 7.8261 42 1 1.7036 -3.7677 8.1549 43 1 3.1591 -0.5858 1.3781 44 1 1.4946 -0.7085 2.0959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691903163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:08 Heat of formation + Delta-G solvation = -25.530328 kcal Electronic energy + Delta-G solvation = -26158.341571 eV Core-core repulsion = 22304.037040 eV Total energy + Delta-G solvation = -3854.304531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46948 -41.39864 -39.09703 -38.74428 -37.15185 -35.92918 -34.64307 -33.17075 -32.38932 -30.71448 -28.79501 -28.21661 -26.60256 -25.63407 -25.24137 -24.02559 -22.91258 -21.76432 -20.03211 -19.55463 -19.42350 -18.85225 -18.63121 -17.39352 -17.04977 -16.76605 -16.52385 -16.44146 -16.01751 -15.60131 -15.51705 -15.33053 -14.79228 -14.48034 -14.44862 -14.15517 -14.06472 -13.88138 -13.60180 -13.31042 -13.19841 -13.13801 -12.96512 -12.72441 -12.19910 -12.17294 -11.97760 -11.91999 -11.81272 -11.53378 -11.27850 -11.19481 -10.99867 -10.91140 -10.56226 -10.43503 -10.27256 -9.07787 -7.96573 -5.27480 -0.42442 -0.23387 1.50666 1.53120 1.53211 1.58895 1.86476 2.24849 2.50126 2.58182 2.72081 3.11276 3.38581 3.49346 3.60301 3.68171 3.76543 3.79842 3.87583 4.06994 4.09423 4.14674 4.23411 4.45311 4.52633 4.54397 4.64144 4.75073 4.78323 4.81976 4.87678 4.94772 5.04902 5.08892 5.13522 5.16643 5.27002 5.36362 5.49369 5.56694 5.79733 6.22424 6.36323 6.45224 6.87082 7.09845 7.30702 7.96512 8.22885 9.26408 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008198 B = 0.003628 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.546499 B = 7716.404545 C =10289.497893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.111 4.111 4 C -0.132 4.132 5 C 0.526 3.474 6 O -0.577 6.577 7 N -0.713 5.713 8 C 0.200 3.800 9 C 0.318 3.682 10 N -0.536 5.536 11 C 0.364 3.636 12 O -0.474 6.474 13 C -0.211 4.211 14 C 0.184 3.816 15 C 0.198 3.802 16 N -0.732 5.732 17 C -0.250 4.250 18 H 0.083 0.917 19 C -0.067 4.067 20 N -0.967 5.967 21 Si 0.975 3.025 22 H -0.274 1.274 23 H -0.296 1.296 24 H -0.280 1.280 25 N -0.516 5.516 26 C -0.124 4.124 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.409 0.591 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.431 0.569 38 H 0.175 0.825 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.070 0.930 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 12.309 -9.538 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.149 4.149 4 C -0.153 4.153 5 C 0.314 3.686 6 O -0.456 6.456 7 N -0.365 5.365 8 C 0.074 3.926 9 C 0.049 3.951 10 N -0.262 5.262 11 C 0.176 3.824 12 O -0.285 6.285 13 C -0.235 4.235 14 C 0.039 3.961 15 C 0.071 3.929 16 N -0.376 5.376 17 C -0.381 4.381 18 H 0.100 0.900 19 C -0.260 4.260 20 N -0.616 5.616 21 Si 0.803 3.197 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.206 1.206 25 N -0.233 5.233 26 C -0.162 4.162 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.244 0.756 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.294 0.706 38 H 0.193 0.807 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.205 0.795 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.893 12.849 -10.741 16.995 hybrid contribution -0.861 -1.153 1.583 2.139 sum -3.754 11.697 -9.158 15.323 Atomic orbital electron populations 1.21627 0.92382 1.02505 1.02662 1.22296 0.96837 0.96846 0.96544 1.22868 1.01781 0.97951 0.92322 1.22906 0.96386 0.98007 0.98030 1.21080 0.88907 0.77403 0.81184 1.90664 1.42137 1.48298 1.64503 1.45862 1.21731 1.62025 1.06912 1.19788 0.90017 1.00943 0.81841 1.22854 0.90618 0.84435 0.97223 1.67759 1.18132 1.30577 1.09774 1.19433 0.91197 0.85474 0.86265 1.84671 1.28734 1.42655 1.72407 1.23076 1.02389 0.93253 1.04810 1.21896 0.90216 0.95191 0.88755 1.19755 0.92148 0.83663 0.97314 1.42262 1.15748 1.10529 1.69048 1.19595 1.00014 0.89873 1.28598 0.89956 1.25540 0.96241 1.01969 1.02204 1.69802 1.06992 1.34676 1.50177 0.85205 0.76518 0.79434 0.78527 1.20007 1.22238 1.20596 1.68120 1.19207 1.24572 1.11395 1.22939 1.01657 0.92794 0.98821 0.91203 0.91961 0.92061 0.89890 0.89621 0.90549 0.84698 0.75625 0.88285 0.89330 0.70588 0.80741 0.91734 0.94112 0.79498 0.93896 0.91082 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.59 71.98 0.69 -1.03 16 2 C -0.11 -1.71 4.55 -10.27 -0.05 -1.76 16 3 C -0.11 -2.04 7.00 31.12 0.22 -1.82 16 4 C -0.13 -2.57 3.80 -11.02 -0.04 -2.61 16 5 C 0.53 13.74 7.36 87.66 0.64 14.38 16 6 O -0.58 -18.96 15.90 -3.03 -0.05 -19.01 16 7 N -0.71 -18.02 5.55 -466.81 -2.59 -20.61 16 8 C 0.20 5.44 6.10 85.63 0.52 5.96 16 9 C 0.32 9.53 7.01 138.76 0.97 10.50 16 10 N -0.54 -15.25 10.36 -300.69 -3.12 -18.36 16 11 C 0.36 9.47 7.83 84.83 0.66 10.13 16 12 O -0.47 -9.38 13.58 -88.22 -1.20 -10.58 16 13 C -0.21 -5.85 9.79 22.54 0.22 -5.63 16 14 C 0.18 6.18 6.18 42.44 0.26 6.44 16 15 C 0.20 7.55 6.61 85.63 0.57 8.11 16 16 N -0.73 -35.55 5.59 -347.17 -1.94 -37.49 16 17 C -0.25 -13.29 9.99 84.04 0.84 -12.45 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 20 N -0.97 -56.81 13.06 21.65 0.28 -56.52 16 21 Si 0.97 44.28 29.55 68.60 2.03 46.30 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 N -0.52 -17.72 10.27 -176.24 -1.81 -19.53 16 26 C -0.12 -2.43 7.19 31.12 0.22 -2.21 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.74 7.34 -2.39 -0.02 0.73 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.31 8.10 -2.38 -0.02 1.29 16 32 H 0.08 1.71 7.43 -2.39 -0.02 1.69 16 33 H 0.14 2.01 7.66 -2.38 -0.02 1.99 16 34 H 0.41 9.60 8.46 -92.71 -0.78 8.81 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.43 4.07 9.06 -74.06 -0.67 3.40 16 38 H 0.18 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.06 2.22 8.06 -2.38 -0.02 2.20 16 40 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.37 19.57 7.66 -92.71 -0.71 18.86 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 44 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -70.06 376.70 -3.30 -73.36 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -1.11 Total: 37.64 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 6.20 Total: 24.81 kcal Atomic # 7 Polarization: -143.35 SS G_CDS: -9.17 Total: -152.52 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -1.25 Total: -29.59 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -70.06 -3.30 -73.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691903163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.826 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds