Wall clock time and date at job start Tue Mar 31 2020 13:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32217 * 120.50499 * 2 1 4 4 C 1.31910 * 121.13819 * 179.97438 * 3 2 1 5 5 N 1.31761 * 122.19664 * 359.97438 * 4 3 2 6 6 C 1.32738 * 120.87053 * 0.02562 * 5 4 3 7 7 O 1.35285 * 120.61368 * 179.97438 * 6 5 4 8 8 C 1.39766 * 120.51050 * 179.97438 * 2 1 3 9 9 C 1.47534 * 120.98034 * 359.97438 * 8 2 1 10 10 O 1.21588 * 119.99970 * 270.04195 * 9 8 2 11 11 N 1.34779 * 120.00189 * 90.04083 * 9 8 2 12 12 C 1.46501 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47235 * 175.16004 * 12 11 9 14 14 N 1.46501 * 110.01688 * 303.90629 * 13 12 11 15 15 C 1.36937 * 119.99905 * 301.40970 * 14 13 12 16 16 H 1.08001 * 120.00185 * 354.61781 * 15 14 13 17 17 C 1.38810 * 119.99645 * 174.61943 * 15 14 13 18 18 N 1.31621 * 120.00086 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46986 * 90.00176 * 19 17 15 21 21 H 1.48497 * 109.47124 * 210.00236 * 19 17 15 22 22 H 1.48499 * 109.46856 * 330.00345 * 19 17 15 23 23 C 1.54269 * 110.03113 * 182.46348 * 13 12 11 24 24 C 1.54884 * 104.19339 * 217.10872 * 23 13 12 25 25 C 1.54889 * 102.75050 * 37.94130 * 24 23 13 26 26 C 1.53874 * 110.02823 * 65.29687 * 13 12 11 27 27 H 1.08993 * 109.47065 * 89.99954 * 1 2 3 28 28 H 1.08997 * 109.46631 * 210.00047 * 1 2 3 29 29 H 1.08995 * 109.46805 * 329.99477 * 1 2 3 30 30 H 1.08004 * 118.90344 * 179.97438 * 4 3 2 31 31 H 0.96703 * 113.99317 * 90.00379 * 7 6 5 32 32 H 0.97000 * 119.99532 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47158 * 295.16567 * 12 11 9 34 34 H 1.09005 * 109.46305 * 55.16085 * 12 11 9 35 35 H 0.97005 * 119.99771 * 121.41336 * 14 13 12 36 36 H 0.97002 * 119.99528 * 179.97438 * 18 17 15 37 37 H 1.09003 * 110.48663 * 335.78332 * 23 13 12 38 38 H 1.08998 * 110.48660 * 98.43044 * 23 13 12 39 39 H 1.09004 * 110.75942 * 279.62563 * 24 23 13 40 40 H 1.09002 * 110.75755 * 156.25753 * 24 23 13 41 41 H 1.09007 * 110.48795 * 203.37749 * 25 24 23 42 42 H 1.08997 * 110.48908 * 80.73890 * 25 24 23 43 43 H 1.08998 * 110.03232 * 238.56727 * 26 13 12 44 44 H 1.09001 * 110.03463 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2116 0.0466 0.0015 6 6 3.6234 -1.1434 0.0016 7 8 4.3620 -2.2769 0.0021 8 6 2.2166 -1.2041 0.0005 9 6 1.5125 -2.5006 0.0017 10 8 1.2220 -3.0337 1.0551 11 7 1.1911 -3.0940 -1.1650 12 6 0.4923 -4.3816 -1.1639 13 6 0.1422 -4.7731 -2.6009 14 7 -0.6468 -3.7120 -3.2316 15 6 -1.8377 -3.3235 -2.6785 16 1 -2.2379 -3.8564 -1.8287 17 6 -2.5306 -2.2446 -3.2103 18 7 -2.0432 -1.5954 -4.2463 19 14 -4.1556 -1.7149 -2.4562 20 1 -3.9034 -0.7102 -1.3923 21 1 -5.0176 -1.1172 -3.5073 22 1 -4.8375 -2.8965 -1.8696 23 6 -0.6487 -6.0976 -2.6099 24 6 -0.1352 -6.8380 -3.8697 25 6 1.3745 -6.4917 -3.8780 26 6 1.4286 -5.0237 -3.4071 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.0088 2.1050 0.0001 31 1 4.5763 -2.6062 0.8858 32 1 1.4231 -2.6688 -2.0054 33 1 1.1365 -5.1442 -0.7262 34 1 -0.4224 -4.2980 -0.5768 35 1 -0.3256 -3.2848 -4.0411 36 1 -2.5277 -0.8418 -4.6181 37 1 -0.4327 -6.6771 -1.7123 38 1 -1.7181 -5.9029 -2.6912 39 1 -0.6236 -6.4582 -4.7670 40 1 -0.2843 -7.9135 -3.7733 41 1 1.7817 -6.5847 -4.8849 42 1 1.9173 -7.1348 -3.1853 43 1 1.4654 -4.3565 -4.2683 44 1 2.3023 -4.8659 -2.7748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698800273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:01 Heat of formation + Delta-G solvation = -23.594694 kcal Electronic energy + Delta-G solvation = -28170.177795 eV Core-core repulsion = 24315.957200 eV Total energy + Delta-G solvation = -3854.220596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39132 -39.32649 -38.12689 -37.81276 -34.20762 -34.13345 -33.36903 -31.99264 -30.63661 -28.76116 -28.29615 -27.77731 -25.45614 -24.16224 -23.16713 -22.83224 -20.81408 -19.97131 -18.99561 -18.77977 -18.07443 -17.49708 -16.98777 -16.41663 -15.83506 -15.42581 -15.03998 -14.73739 -14.33065 -14.21679 -14.14040 -13.73849 -13.36959 -13.30388 -12.84520 -12.72806 -12.69551 -12.54080 -12.03574 -11.94156 -11.49906 -11.31450 -11.17527 -10.84595 -10.75530 -10.68666 -10.55723 -10.38704 -10.28892 -10.17435 -9.91468 -9.76950 -9.70388 -9.46136 -9.42257 -8.97258 -8.56498 -7.07133 -5.85937 -3.15487 0.54428 0.83515 2.72023 3.14944 3.36381 3.39410 3.44349 3.44836 3.65302 3.93735 4.18736 4.50682 4.76869 4.93453 5.06435 5.07232 5.16835 5.20241 5.32540 5.50662 5.62821 5.71137 5.76798 5.78504 5.89695 5.91045 5.96730 6.06502 6.12950 6.21009 6.28380 6.32686 6.38143 6.51395 6.53310 6.73209 6.74057 6.76676 6.89034 7.01255 7.15630 7.65090 7.87427 7.89807 8.31954 8.47406 9.43943 9.97842 10.33463 11.35677 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.005629 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.464239 B = 4973.124596 C = 6810.536926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.237 3.763 3 N -0.526 5.526 4 C 0.330 3.670 5 N -0.547 5.547 6 C 0.393 3.607 7 O -0.470 6.470 8 C -0.244 4.244 9 C 0.575 3.425 10 O -0.546 6.546 11 N -0.680 5.680 12 C 0.119 3.881 13 C 0.189 3.811 14 N -0.711 5.711 15 C -0.233 4.233 16 H 0.070 0.930 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.897 3.103 20 H -0.289 1.289 21 H -0.293 1.293 22 H -0.282 1.282 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.127 4.127 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.204 0.796 31 H 0.411 0.589 32 H 0.404 0.596 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.556 -1.821 5.745 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 N -0.242 5.242 4 C 0.042 3.958 5 N -0.272 5.272 6 C 0.205 3.795 7 O -0.278 6.278 8 C -0.253 4.253 9 C 0.357 3.643 10 O -0.425 6.425 11 N -0.328 5.328 12 C -0.007 4.007 13 C 0.096 3.904 14 N -0.352 5.352 15 C -0.364 4.364 16 H 0.088 0.912 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.729 3.271 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.171 4.171 24 C -0.154 4.154 25 C -0.158 4.158 26 C -0.165 4.165 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.220 0.780 31 H 0.272 0.728 32 H 0.239 0.761 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.622 -1.352 5.960 12.255 hybrid contribution -0.970 -0.052 0.139 0.981 sum 9.652 -1.404 6.099 11.503 Atomic orbital electron populations 1.20989 0.86326 1.04518 1.05664 1.21934 0.98030 0.85833 0.85095 1.68315 1.10027 1.29600 1.16273 1.24926 0.86412 0.95992 0.88421 1.68009 1.42677 0.98676 1.17830 1.19351 0.85524 0.85860 0.88756 1.84629 1.72594 1.36110 1.34431 1.21862 0.94880 0.97376 1.11177 1.17447 0.78943 0.83207 0.84661 1.90784 1.55473 1.64987 1.31261 1.45701 1.56656 1.22671 1.07776 1.21986 0.96029 0.82985 0.99699 1.20465 0.90275 0.89794 0.89823 1.42566 1.21932 1.40701 1.30023 1.19079 0.96792 1.09508 1.11070 0.91242 1.24672 0.98892 0.98338 0.98418 1.69651 1.39645 1.23283 1.25145 0.86342 0.84031 0.78557 0.78209 1.21608 1.21896 1.20799 1.22814 1.01813 0.96034 0.96428 1.22385 0.95156 0.98719 0.99189 1.22297 0.97024 0.96225 1.00243 1.22440 0.97394 0.96748 0.99914 0.87502 0.89490 0.89425 0.77961 0.72825 0.76087 0.92805 0.91118 0.78104 0.93539 0.92901 0.90234 0.91400 0.92707 0.92364 0.92264 0.91337 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.85 36.01 0.35 -1.49 16 2 C 0.24 3.72 6.86 -81.85 -0.56 3.16 16 3 N -0.53 -7.62 10.36 -10.52 -0.11 -7.73 16 4 C 0.33 4.11 12.27 -92.08 -1.13 2.98 16 5 N -0.55 -7.53 10.45 -14.31 -0.15 -7.68 16 6 C 0.39 5.68 7.85 -16.19 -0.13 5.56 16 7 O -0.47 -5.91 13.10 -17.55 -0.23 -6.14 16 8 C -0.24 -3.88 5.67 -104.56 -0.59 -4.47 16 9 C 0.57 10.07 5.51 -12.47 -0.07 10.00 16 10 O -0.55 -10.89 17.10 5.29 0.09 -10.80 16 11 N -0.68 -11.72 5.10 -61.35 -0.31 -12.04 16 12 C 0.12 2.07 3.99 -4.04 -0.02 2.06 16 13 C 0.19 3.27 0.68 -130.70 -0.09 3.18 16 14 N -0.71 -15.23 4.76 -46.20 -0.22 -15.45 16 15 C -0.23 -5.71 8.39 -15.06 -0.13 -5.83 16 16 H 0.07 1.72 7.23 -52.49 -0.38 1.34 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.93 -25.62 13.06 55.49 0.72 -24.89 16 19 Si 0.90 21.14 29.55 -169.99 -5.02 16.12 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.13 -2.15 5.94 -25.07 -0.15 -2.30 16 24 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 25 C -0.12 -1.59 6.83 -25.07 -0.17 -1.76 16 26 C -0.13 -1.90 5.80 -25.61 -0.15 -2.05 16 27 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.09 1.45 7.17 -51.93 -0.37 1.08 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.41 3.31 9.06 45.56 0.41 3.72 16 32 H 0.40 7.05 7.98 -40.82 -0.33 6.73 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.40 7.49 -51.93 -0.39 1.01 16 35 H 0.38 8.97 7.28 -40.82 -0.30 8.68 16 36 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 38 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.08 7.44 -51.93 -0.39 0.70 16 44 H 0.06 0.88 7.54 -51.93 -0.39 0.49 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -29.94 366.39 -8.22 -38.17 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -5.42 Total: 18.04 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -3.09 Total: 6.88 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -0.07 Total: -67.79 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.14 Total: -16.94 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.94 -8.22 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698800273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.571 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds