Wall clock time and date at job start Tue Mar 31 2020 13:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32217 * 120.50499 * 2 1 4 4 C 1.31910 * 121.13819 * 179.97438 * 3 2 1 5 5 N 1.31761 * 122.19664 * 359.97438 * 4 3 2 6 6 C 1.32738 * 120.87053 * 0.02562 * 5 4 3 7 7 O 1.35285 * 120.61368 * 179.97438 * 6 5 4 8 8 C 1.39766 * 120.51050 * 179.97438 * 2 1 3 9 9 C 1.47534 * 120.98034 * 359.97438 * 8 2 1 10 10 O 1.21588 * 119.99970 * 270.04195 * 9 8 2 11 11 N 1.34779 * 120.00189 * 90.04083 * 9 8 2 12 12 C 1.46501 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47235 * 175.16004 * 12 11 9 14 14 N 1.46501 * 110.01688 * 303.90629 * 13 12 11 15 15 C 1.36937 * 119.99905 * 301.40970 * 14 13 12 16 16 H 1.08001 * 120.00185 * 354.61781 * 15 14 13 17 17 C 1.38810 * 119.99645 * 174.61943 * 15 14 13 18 18 N 1.31621 * 120.00086 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46986 * 90.00176 * 19 17 15 21 21 H 1.48497 * 109.47124 * 210.00236 * 19 17 15 22 22 H 1.48499 * 109.46856 * 330.00345 * 19 17 15 23 23 C 1.54269 * 110.03113 * 182.46348 * 13 12 11 24 24 C 1.54884 * 104.19339 * 217.10872 * 23 13 12 25 25 C 1.54889 * 102.75050 * 37.94130 * 24 23 13 26 26 C 1.53874 * 110.02823 * 65.29687 * 13 12 11 27 27 H 1.08993 * 109.47065 * 89.99954 * 1 2 3 28 28 H 1.08997 * 109.46631 * 210.00047 * 1 2 3 29 29 H 1.08995 * 109.46805 * 329.99477 * 1 2 3 30 30 H 1.08004 * 118.90344 * 179.97438 * 4 3 2 31 31 H 0.96703 * 113.99317 * 90.00379 * 7 6 5 32 32 H 0.97000 * 119.99532 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47158 * 295.16567 * 12 11 9 34 34 H 1.09005 * 109.46305 * 55.16085 * 12 11 9 35 35 H 0.97005 * 119.99771 * 121.41336 * 14 13 12 36 36 H 0.97002 * 119.99528 * 179.97438 * 18 17 15 37 37 H 1.09003 * 110.48663 * 335.78332 * 23 13 12 38 38 H 1.08998 * 110.48660 * 98.43044 * 23 13 12 39 39 H 1.09004 * 110.75942 * 279.62563 * 24 23 13 40 40 H 1.09002 * 110.75755 * 156.25753 * 24 23 13 41 41 H 1.09007 * 110.48795 * 203.37749 * 25 24 23 42 42 H 1.08997 * 110.48908 * 80.73890 * 25 24 23 43 43 H 1.08998 * 110.03232 * 238.56727 * 26 13 12 44 44 H 1.09001 * 110.03463 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2116 0.0466 0.0015 6 6 3.6234 -1.1434 0.0016 7 8 4.3620 -2.2769 0.0021 8 6 2.2166 -1.2041 0.0005 9 6 1.5125 -2.5006 0.0017 10 8 1.2220 -3.0337 1.0551 11 7 1.1911 -3.0940 -1.1650 12 6 0.4923 -4.3816 -1.1639 13 6 0.1422 -4.7731 -2.6009 14 7 -0.6468 -3.7120 -3.2316 15 6 -1.8377 -3.3235 -2.6785 16 1 -2.2379 -3.8564 -1.8287 17 6 -2.5306 -2.2446 -3.2103 18 7 -2.0432 -1.5954 -4.2463 19 14 -4.1556 -1.7149 -2.4562 20 1 -3.9034 -0.7102 -1.3923 21 1 -5.0176 -1.1172 -3.5073 22 1 -4.8375 -2.8965 -1.8696 23 6 -0.6487 -6.0976 -2.6099 24 6 -0.1352 -6.8380 -3.8697 25 6 1.3745 -6.4917 -3.8780 26 6 1.4286 -5.0237 -3.4071 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.0088 2.1050 0.0001 31 1 4.5763 -2.6062 0.8858 32 1 1.4231 -2.6688 -2.0054 33 1 1.1365 -5.1442 -0.7262 34 1 -0.4224 -4.2980 -0.5768 35 1 -0.3256 -3.2848 -4.0411 36 1 -2.5277 -0.8418 -4.6181 37 1 -0.4327 -6.6771 -1.7123 38 1 -1.7181 -5.9029 -2.6912 39 1 -0.6236 -6.4582 -4.7670 40 1 -0.2843 -7.9135 -3.7733 41 1 1.7817 -6.5847 -4.8849 42 1 1.9173 -7.1348 -3.1853 43 1 1.4654 -4.3565 -4.2683 44 1 2.3023 -4.8659 -2.7748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698800273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:01 Heat of formation + Delta-G solvation = -46.840966 kcal Electronic energy + Delta-G solvation = -28171.185829 eV Core-core repulsion = 24315.957200 eV Total energy + Delta-G solvation = -3855.228630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52840 -40.71019 -39.49428 -38.86165 -35.59099 -35.33447 -35.10939 -33.17152 -32.31471 -30.07009 -29.55493 -29.23860 -26.74163 -25.72949 -24.65884 -23.97537 -22.12876 -21.24588 -20.20890 -20.03769 -19.20775 -18.99251 -18.72840 -17.54925 -17.19905 -16.82471 -16.23034 -16.11751 -15.87610 -15.55184 -15.32417 -15.20014 -15.12073 -14.46265 -14.21729 -14.05348 -13.95007 -13.75502 -13.45629 -13.20224 -13.18599 -12.90736 -12.52706 -12.41728 -12.33661 -12.15022 -11.88066 -11.71576 -11.57260 -11.50756 -11.38519 -11.32946 -11.13018 -10.82896 -10.66335 -10.55856 -10.02069 -8.93026 -7.87666 -5.13578 -0.55349 -0.30704 1.35364 1.45902 1.49298 1.54057 2.09845 2.13973 2.48857 2.58784 2.85389 3.10564 3.41588 3.54826 3.75176 3.78420 3.85656 3.96126 4.06037 4.14244 4.20826 4.43849 4.46967 4.56053 4.58789 4.67238 4.76313 4.86363 4.86903 4.96709 5.05067 5.12351 5.13582 5.18741 5.28216 5.40333 5.42620 5.55189 5.62797 5.64675 5.65767 6.29391 6.34654 6.45704 6.81837 7.06691 7.42626 8.15342 8.39993 9.34408 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.005629 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.464239 B = 4973.124596 C = 6810.536926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.228 3.772 3 N -0.535 5.535 4 C 0.338 3.662 5 N -0.550 5.550 6 C 0.402 3.598 7 O -0.473 6.473 8 C -0.264 4.264 9 C 0.580 3.420 10 O -0.574 6.574 11 N -0.679 5.679 12 C 0.125 3.875 13 C 0.184 3.816 14 N -0.714 5.714 15 C -0.211 4.211 16 H 0.065 0.935 17 C -0.060 4.060 18 N -0.959 5.959 19 Si 0.943 3.057 20 H -0.288 1.288 21 H -0.302 1.302 22 H -0.279 1.279 23 C -0.130 4.130 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.121 4.121 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.248 0.752 31 H 0.431 0.569 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.374 0.626 36 H 0.246 0.754 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 -2.460 6.316 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 N -0.252 5.252 4 C 0.052 3.948 5 N -0.275 5.275 6 C 0.214 3.786 7 O -0.284 6.284 8 C -0.273 4.273 9 C 0.364 3.636 10 O -0.454 6.454 11 N -0.325 5.325 12 C -0.001 4.001 13 C 0.093 3.907 14 N -0.354 5.354 15 C -0.344 4.344 16 H 0.083 0.917 17 C -0.253 4.253 18 N -0.610 5.610 19 Si 0.774 3.226 20 H -0.216 1.216 21 H -0.229 1.229 22 H -0.204 1.204 23 C -0.170 4.170 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.159 4.159 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.264 0.736 31 H 0.295 0.705 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.207 0.793 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.628 -2.035 6.568 14.378 hybrid contribution -1.497 0.090 0.015 1.500 sum 11.131 -1.945 6.583 13.077 Atomic orbital electron populations 1.20852 0.87030 1.04615 1.04298 1.21894 0.97900 0.86421 0.85482 1.68374 1.11067 1.28799 1.16932 1.25852 0.85812 0.97236 0.85944 1.68173 1.42481 0.98651 1.18216 1.19403 0.85060 0.86650 0.87529 1.84578 1.72070 1.35566 1.36178 1.21730 0.95668 0.96375 1.13547 1.17639 0.78367 0.83533 0.84071 1.90758 1.56650 1.65959 1.32083 1.45710 1.56403 1.22641 1.07795 1.21903 0.95289 0.83667 0.99199 1.20724 0.91195 0.88930 0.89809 1.42642 1.21504 1.41563 1.29726 1.19216 0.97255 1.08153 1.09736 0.91690 1.25159 1.01370 0.99310 0.99412 1.69764 1.40593 1.23952 1.26701 0.85597 0.81590 0.78148 0.77251 1.21550 1.22876 1.20407 1.22766 0.99750 0.95925 0.98556 1.22352 0.95876 0.99784 0.97037 1.22287 0.96156 0.94851 1.01625 1.22387 0.96175 0.98103 0.99283 0.89571 0.91072 0.87655 0.73634 0.70516 0.76165 0.90931 0.93887 0.79257 0.94445 0.90955 0.93243 0.93353 0.90323 0.90988 0.90070 0.92370 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.55 9.85 71.24 0.70 -2.85 16 2 C 0.23 7.11 6.86 42.87 0.29 7.40 16 3 N -0.54 -14.71 10.36 -187.19 -1.94 -16.65 16 4 C 0.34 7.53 12.27 180.86 2.22 9.74 16 5 N -0.55 -13.84 10.45 -312.04 -3.26 -17.10 16 6 C 0.40 10.99 7.85 85.19 0.67 11.66 16 7 O -0.47 -10.96 13.10 -85.70 -1.12 -12.09 16 8 C -0.26 -8.25 5.67 -19.83 -0.11 -8.37 16 9 C 0.58 20.30 5.51 86.69 0.48 20.77 16 10 O -0.57 -22.93 17.10 -3.99 -0.07 -23.00 16 11 N -0.68 -23.34 5.10 -466.27 -2.38 -25.72 16 12 C 0.13 4.31 3.99 86.38 0.34 4.66 16 13 C 0.18 6.27 0.68 4.33 0.00 6.27 16 14 N -0.71 -31.07 4.76 -300.07 -1.43 -32.49 16 15 C -0.21 -10.55 8.39 84.03 0.70 -9.84 16 16 H 0.07 3.28 7.23 -2.91 -0.02 3.26 16 17 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 18 N -0.96 -54.30 13.06 21.65 0.28 -54.02 16 19 Si 0.94 44.42 29.55 68.60 2.03 46.45 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C -0.13 -4.13 5.94 31.67 0.19 -3.95 16 24 C -0.11 -3.03 6.91 31.88 0.22 -2.81 16 25 C -0.11 -2.61 6.83 31.67 0.22 -2.40 16 26 C -0.12 -3.43 5.80 31.32 0.18 -3.24 16 27 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.07 2.47 7.17 -2.39 -0.02 2.45 16 29 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.25 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.43 6.02 9.06 -74.06 -0.67 5.35 16 32 H 0.40 14.12 7.98 -92.71 -0.74 13.38 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.72 7.49 -2.38 -0.02 1.71 16 35 H 0.37 17.84 7.28 -92.70 -0.67 17.16 16 36 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.07 2.01 7.85 -2.39 -0.02 2.00 16 38 H 0.05 1.87 7.12 -2.39 -0.02 1.85 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.78 7.44 -2.39 -0.02 1.76 16 44 H 0.07 1.92 7.54 -2.39 -0.02 1.90 16 Total: -1.00 -65.15 366.39 -2.33 -67.48 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -1.02 Total: 42.80 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 6.57 Total: 24.33 kcal Atomic # 7 Polarization: -137.26 SS G_CDS: -8.72 Total: -145.98 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.19 Total: -35.08 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.15 -2.33 -67.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698800273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.636 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds