Wall clock time and date at job start Tue Mar 31 2020 12:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38487 * 120.81908 * 2 1 4 4 C 1.39264 * 119.19010 * 179.97438 * 3 2 1 5 5 C 1.48330 * 119.57128 * 179.97438 * 4 3 2 6 6 O 1.21495 * 120.00239 * 353.66617 * 5 4 3 7 7 N 1.34775 * 120.00150 * 173.66816 * 5 4 3 8 8 C 1.46504 * 119.99879 * 354.48344 * 7 5 4 9 9 C 1.46499 * 120.00425 * 174.48359 * 7 5 4 10 10 H 1.09006 * 109.46889 * 0.02562 * 9 7 5 11 11 C 1.53002 * 109.47389 * 119.99536 * 9 7 5 12 12 C 1.53000 * 109.47317 * 239.99952 * 9 7 5 13 13 N 1.46499 * 109.46833 * 54.99809 * 12 9 7 14 14 C 1.36941 * 119.99523 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99639 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00322 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47327 * 89.99923 * 18 16 14 20 20 H 1.48498 * 109.46884 * 209.99935 * 18 16 14 21 21 H 1.48503 * 109.46628 * 329.99706 * 18 16 14 22 22 N 1.32751 * 120.85957 * 359.97438 * 4 3 2 23 23 C 1.31384 * 121.79878 * 359.97438 * 22 4 3 24 24 C 1.39774 * 120.72012 * 0.02562 * 23 22 4 25 25 C 1.48005 * 120.46182 * 180.02562 * 24 23 22 26 26 N 1.34771 * 120.00172 * 355.35619 * 25 24 23 27 27 O 1.21531 * 119.99537 * 175.36001 * 25 24 23 28 28 H 1.09000 * 109.47153 * 263.34381 * 1 2 3 29 29 H 1.08994 * 109.47278 * 23.34868 * 1 2 3 30 30 H 1.08998 * 109.46917 * 143.35060 * 1 2 3 31 31 H 1.07993 * 120.40935 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47195 * 84.28007 * 8 7 5 33 33 H 1.09004 * 109.46780 * 204.28622 * 8 7 5 34 34 H 1.09000 * 109.47145 * 324.27956 * 8 7 5 35 35 H 1.09003 * 109.47450 * 300.00591 * 11 9 7 36 36 H 1.09006 * 109.46616 * 60.00432 * 11 9 7 37 37 H 1.09002 * 109.47562 * 180.02562 * 11 9 7 38 38 H 1.09006 * 109.46964 * 174.99653 * 12 9 7 39 39 H 1.09002 * 109.46796 * 294.99618 * 12 9 7 40 40 H 0.97000 * 120.00286 * 359.97438 * 13 12 9 41 41 H 0.96999 * 120.00008 * 180.02562 * 17 16 14 42 42 H 1.08005 * 119.64201 * 180.28177 * 23 22 4 43 43 H 0.97002 * 120.00253 * 0.02562 * 26 25 24 44 44 H 0.96998 * 119.99900 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6086 1.1497 0.0005 5 6 4.3770 2.4185 0.0000 6 8 3.7973 3.4798 -0.1170 7 7 5.7183 2.3941 0.1292 8 6 6.4060 1.1273 0.3912 9 6 6.4887 3.6342 0.0078 10 1 5.8107 4.4657 -0.1849 11 6 7.2518 3.8902 1.3090 12 6 7.4817 3.5066 -1.1492 13 7 6.7621 3.1437 -2.3725 14 6 7.4481 2.9736 -3.5454 15 1 8.5196 3.1065 -3.5685 16 6 6.7662 2.6303 -4.7047 17 7 5.4603 2.4679 -4.6765 18 14 7.7020 2.3975 -6.3046 19 1 8.1241 0.9793 -6.4293 20 1 6.8243 2.7551 -7.4479 21 1 8.9013 3.2732 -6.3084 22 7 4.2569 -0.0087 0.0016 23 6 3.6205 -1.1582 0.0026 24 6 2.2234 -1.2008 0.0021 25 6 1.5124 -2.4989 0.0039 26 7 2.2089 -3.6490 -0.0885 27 8 0.3004 -2.5277 0.0886 28 1 -0.3633 -0.1191 1.0207 29 1 -0.3633 0.9434 -0.4073 30 1 -0.3633 -0.8245 -0.6134 31 1 1.6968 2.1359 -0.0004 32 1 6.5807 0.6071 -0.5507 33 1 7.3603 1.3260 0.8790 34 1 5.7887 0.5061 1.0402 35 1 6.5444 3.9811 2.1333 36 1 7.9298 3.0587 1.5021 37 1 7.8247 4.8131 1.2188 38 1 7.9921 4.4584 -1.2966 39 1 8.2142 2.7338 -0.9157 40 1 5.7997 3.0240 -2.3517 41 1 4.9838 2.2276 -5.4866 42 1 4.1830 -2.0802 0.0080 43 1 3.1764 -3.6260 -0.1559 44 1 1.7429 -4.4996 -0.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698856928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:31 Heat of formation + Delta-G solvation = -4.667764 kcal Electronic energy + Delta-G solvation = -27444.875853 eV Core-core repulsion = 23591.475990 eV Total energy + Delta-G solvation = -3853.399862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09005 -39.74426 -38.56429 -36.39884 -34.55739 -34.14886 -33.61191 -31.97706 -31.12094 -29.97837 -28.07476 -26.53539 -25.72403 -25.24160 -23.05883 -22.55290 -21.75434 -20.64560 -19.00574 -18.19794 -17.71564 -17.04323 -16.76859 -16.47883 -15.66545 -15.51697 -15.22013 -15.01474 -14.80356 -14.41275 -13.81151 -13.70936 -13.53878 -13.22135 -13.06599 -12.85414 -12.80423 -12.64921 -12.38816 -12.29804 -12.19684 -11.84542 -11.67898 -11.42844 -10.82614 -10.76096 -10.44643 -10.26905 -10.03778 -10.02915 -9.97539 -9.67788 -9.62582 -9.33224 -9.15741 -8.84569 -8.18984 -6.87031 -5.70699 -2.99890 0.21351 1.07631 2.39386 3.06665 3.13310 3.24856 3.44815 3.49776 3.52083 3.82985 4.03097 4.44531 4.52768 4.56492 4.62884 4.83684 5.02927 5.23636 5.34996 5.44401 5.55087 5.57245 5.60548 5.63072 5.64655 5.65867 5.90844 6.03672 6.05417 6.12671 6.18249 6.21731 6.37027 6.41088 6.47601 6.48440 6.53872 6.76459 6.97178 7.00964 7.54892 7.72158 7.74169 7.92208 8.43199 8.46619 9.58054 10.16905 10.51931 11.51541 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.004100 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.409217 B = 6827.974002 C = 8127.533141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.016 3.984 3 C -0.122 4.122 4 C 0.124 3.876 5 C 0.568 3.432 6 O -0.532 6.532 7 N -0.573 5.573 8 C 0.092 3.908 9 C 0.123 3.877 10 H 0.100 0.900 11 C -0.155 4.155 12 C 0.145 3.855 13 N -0.728 5.728 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.905 3.095 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 N -0.451 5.451 23 C 0.134 3.866 24 C -0.189 4.189 25 C 0.572 3.428 26 N -0.849 5.849 27 O -0.533 6.533 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.162 0.838 43 H 0.402 0.598 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -10.136 15.424 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.007 3.993 3 C -0.143 4.143 4 C -0.013 4.013 5 C 0.354 3.646 6 O -0.409 6.409 7 N -0.304 5.304 8 C -0.051 4.051 9 C 0.020 3.980 10 H 0.119 0.881 11 C -0.213 4.213 12 C 0.016 3.984 13 N -0.372 5.372 14 C -0.370 4.370 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 N -0.162 5.162 23 C -0.028 4.028 24 C -0.195 4.195 25 C 0.358 3.642 26 N -0.414 5.414 27 O -0.410 6.410 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.173 0.827 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.179 0.821 43 H 0.232 0.768 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -4.011 -9.333 15.297 18.363 hybrid contribution -0.157 -0.741 -1.197 1.417 sum -4.168 -10.074 14.100 17.824 Atomic orbital electron populations 1.21105 0.88693 1.04044 1.03963 1.20451 0.97682 0.90874 0.90271 1.22048 0.93753 0.99527 0.98988 1.21430 0.91661 0.92546 0.95641 1.17805 0.82313 0.87053 0.77438 1.90768 1.69311 1.30329 1.50476 1.47541 1.05220 1.09551 1.68081 1.22036 0.96307 0.84453 1.02303 1.21494 0.94219 0.86920 0.95368 0.88147 1.22063 1.00279 1.02128 0.96851 1.21004 0.93202 0.97741 0.86408 1.42286 1.07283 1.83793 1.03836 1.19205 0.91676 1.39426 0.86696 0.91264 1.24735 0.95565 1.02724 0.97850 1.69691 1.06070 1.54486 1.27584 0.86215 0.78620 0.77703 0.83796 1.21848 1.21844 1.20781 1.68161 1.39038 0.97637 1.11407 1.22995 0.90098 0.96741 0.92931 1.20876 0.95307 0.94073 1.09242 1.18055 0.86745 0.83987 0.75452 1.43742 1.11652 1.08445 1.77514 1.90772 1.13521 1.87234 1.49492 0.89985 0.91282 0.88274 0.82736 0.91369 0.92508 0.89944 0.92589 0.92216 0.91286 0.95340 0.96039 0.78100 0.93641 0.82067 0.76802 0.76243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.84 36.01 0.32 -1.07 16 2 C 0.02 0.20 5.95 -103.93 -0.62 -0.41 16 3 C -0.12 -1.81 9.30 -39.11 -0.36 -2.17 16 4 C 0.12 2.05 6.57 -82.94 -0.54 1.50 16 5 C 0.57 10.78 7.36 -12.11 -0.09 10.69 16 6 O -0.53 -11.43 15.67 5.37 0.08 -11.35 16 7 N -0.57 -10.00 2.24 -174.86 -0.39 -10.39 16 8 C 0.09 1.35 8.23 59.85 0.49 1.85 16 9 C 0.12 2.14 2.79 -67.93 -0.19 1.95 16 10 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 11 C -0.15 -2.00 9.18 37.16 0.34 -1.66 16 12 C 0.15 2.96 5.56 -4.04 -0.02 2.94 16 13 N -0.73 -19.06 5.43 -59.91 -0.33 -19.39 16 14 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 18 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 N -0.45 -6.51 6.14 -9.48 -0.06 -6.57 16 23 C 0.13 1.51 10.70 -17.17 -0.18 1.32 16 24 C -0.19 -2.25 5.90 -104.72 -0.62 -2.87 16 25 C 0.57 6.19 8.01 -12.26 -0.10 6.10 16 26 N -0.85 -5.54 8.83 30.56 0.27 -5.27 16 27 O -0.53 -7.24 14.30 5.34 0.08 -7.16 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.70 8.06 -51.93 -0.42 0.29 16 30 H 0.10 1.24 5.93 -51.93 -0.31 0.93 16 31 H 0.15 2.21 7.64 -52.49 -0.40 1.81 16 32 H 0.07 1.18 7.98 -51.93 -0.41 0.76 16 33 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 34 H 0.08 1.08 5.80 -51.93 -0.30 0.78 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.70 6.67 -51.93 -0.35 0.35 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.43 7.84 -51.93 -0.41 0.02 16 40 H 0.38 10.99 7.06 -40.82 -0.29 10.70 16 41 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.16 1.12 6.44 -52.48 -0.34 0.79 16 43 H 0.40 1.64 6.91 -40.82 -0.28 1.36 16 44 H 0.41 2.04 8.93 -40.82 -0.36 1.68 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -36.53 361.75 -6.81 -43.34 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.80 Total: 11.17 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -1.82 Total: 10.73 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: 0.22 Total: -69.95 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.16 Total: -18.51 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.53 -6.81 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698856928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.675 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds