Wall clock time and date at job start Tue Mar 31 2020 12:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38487 * 120.81908 * 2 1 4 4 C 1.39264 * 119.19010 * 179.97438 * 3 2 1 5 5 C 1.48330 * 119.57128 * 179.97438 * 4 3 2 6 6 O 1.21495 * 120.00239 * 353.66617 * 5 4 3 7 7 N 1.34775 * 120.00150 * 173.66816 * 5 4 3 8 8 C 1.46504 * 119.99879 * 354.48344 * 7 5 4 9 9 C 1.46499 * 120.00425 * 174.48359 * 7 5 4 10 10 H 1.09006 * 109.46889 * 0.02562 * 9 7 5 11 11 C 1.53002 * 109.47389 * 119.99536 * 9 7 5 12 12 C 1.53000 * 109.47317 * 239.99952 * 9 7 5 13 13 N 1.46499 * 109.46833 * 54.99809 * 12 9 7 14 14 C 1.36941 * 119.99523 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99639 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00322 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47327 * 89.99923 * 18 16 14 20 20 H 1.48498 * 109.46884 * 209.99935 * 18 16 14 21 21 H 1.48503 * 109.46628 * 329.99706 * 18 16 14 22 22 N 1.32751 * 120.85957 * 359.97438 * 4 3 2 23 23 C 1.31384 * 121.79878 * 359.97438 * 22 4 3 24 24 C 1.39774 * 120.72012 * 0.02562 * 23 22 4 25 25 C 1.48005 * 120.46182 * 180.02562 * 24 23 22 26 26 N 1.34771 * 120.00172 * 355.35619 * 25 24 23 27 27 O 1.21531 * 119.99537 * 175.36001 * 25 24 23 28 28 H 1.09000 * 109.47153 * 263.34381 * 1 2 3 29 29 H 1.08994 * 109.47278 * 23.34868 * 1 2 3 30 30 H 1.08998 * 109.46917 * 143.35060 * 1 2 3 31 31 H 1.07993 * 120.40935 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47195 * 84.28007 * 8 7 5 33 33 H 1.09004 * 109.46780 * 204.28622 * 8 7 5 34 34 H 1.09000 * 109.47145 * 324.27956 * 8 7 5 35 35 H 1.09003 * 109.47450 * 300.00591 * 11 9 7 36 36 H 1.09006 * 109.46616 * 60.00432 * 11 9 7 37 37 H 1.09002 * 109.47562 * 180.02562 * 11 9 7 38 38 H 1.09006 * 109.46964 * 174.99653 * 12 9 7 39 39 H 1.09002 * 109.46796 * 294.99618 * 12 9 7 40 40 H 0.97000 * 120.00286 * 359.97438 * 13 12 9 41 41 H 0.96999 * 120.00008 * 180.02562 * 17 16 14 42 42 H 1.08005 * 119.64201 * 180.28177 * 23 22 4 43 43 H 0.97002 * 120.00253 * 0.02562 * 26 25 24 44 44 H 0.96998 * 119.99900 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6086 1.1497 0.0005 5 6 4.3770 2.4185 0.0000 6 8 3.7973 3.4798 -0.1170 7 7 5.7183 2.3941 0.1292 8 6 6.4060 1.1273 0.3912 9 6 6.4887 3.6342 0.0078 10 1 5.8107 4.4657 -0.1849 11 6 7.2518 3.8902 1.3090 12 6 7.4817 3.5066 -1.1492 13 7 6.7621 3.1437 -2.3725 14 6 7.4481 2.9736 -3.5454 15 1 8.5196 3.1065 -3.5685 16 6 6.7662 2.6303 -4.7047 17 7 5.4603 2.4679 -4.6765 18 14 7.7020 2.3975 -6.3046 19 1 8.1241 0.9793 -6.4293 20 1 6.8243 2.7551 -7.4479 21 1 8.9013 3.2732 -6.3084 22 7 4.2569 -0.0087 0.0016 23 6 3.6205 -1.1582 0.0026 24 6 2.2234 -1.2008 0.0021 25 6 1.5124 -2.4989 0.0039 26 7 2.2089 -3.6490 -0.0885 27 8 0.3004 -2.5277 0.0886 28 1 -0.3633 -0.1191 1.0207 29 1 -0.3633 0.9434 -0.4073 30 1 -0.3633 -0.8245 -0.6134 31 1 1.6968 2.1359 -0.0004 32 1 6.5807 0.6071 -0.5507 33 1 7.3603 1.3260 0.8790 34 1 5.7887 0.5061 1.0402 35 1 6.5444 3.9811 2.1333 36 1 7.9298 3.0587 1.5021 37 1 7.8247 4.8131 1.2188 38 1 7.9921 4.4584 -1.2966 39 1 8.2142 2.7338 -0.9157 40 1 5.7997 3.0240 -2.3517 41 1 4.9838 2.2276 -5.4866 42 1 4.1830 -2.0802 0.0080 43 1 3.1764 -3.6260 -0.1559 44 1 1.7429 -4.4996 -0.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698856928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:31 Heat of formation + Delta-G solvation = -32.454346 kcal Electronic energy + Delta-G solvation = -27446.080769 eV Core-core repulsion = 23591.475990 eV Total energy + Delta-G solvation = -3854.604779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.17256 -40.92414 -39.64408 -37.91929 -35.95325 -35.32405 -34.80804 -33.46941 -32.43867 -31.59166 -29.06026 -27.79483 -27.38090 -26.48100 -24.53023 -23.99227 -22.86507 -21.79840 -20.39565 -19.12914 -19.00854 -18.77924 -17.91197 -17.62456 -16.82270 -16.77539 -16.66868 -16.19256 -16.08769 -15.64673 -15.34009 -15.22646 -14.85315 -14.65811 -14.20869 -14.04776 -13.93976 -13.85328 -13.73561 -13.67783 -13.30901 -13.22292 -12.97222 -12.80383 -12.74399 -12.51775 -12.13879 -11.81479 -11.73260 -11.39769 -11.18283 -10.95459 -10.83386 -10.59530 -10.40602 -10.26552 -9.57692 -9.00108 -7.93571 -5.23542 -0.87416 0.04853 1.30237 1.45021 1.47636 1.56148 1.85743 2.02256 2.39058 2.55350 2.70610 2.96528 3.39723 3.44384 3.52686 3.65411 3.81042 3.91621 3.95246 4.09160 4.30893 4.41504 4.43964 4.48142 4.55506 4.60309 4.72811 4.81695 4.86466 4.89845 4.93627 5.01746 5.15033 5.19668 5.24388 5.33456 5.39891 5.47926 5.66382 5.86127 6.25536 6.30838 6.32949 6.54593 7.04273 7.22045 7.32160 8.08402 8.31610 9.29719 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011213 B = 0.004100 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.409217 B = 6827.974002 C = 8127.533141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.009 3.991 3 C -0.131 4.131 4 C 0.098 3.902 5 C 0.556 3.444 6 O -0.574 6.574 7 N -0.573 5.573 8 C 0.096 3.904 9 C 0.125 3.875 10 H 0.071 0.929 11 C -0.142 4.142 12 C 0.143 3.857 13 N -0.742 5.742 14 C -0.241 4.241 15 H 0.080 0.920 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.975 3.025 19 H -0.284 1.284 20 H -0.300 1.300 21 H -0.267 1.267 22 N -0.461 5.461 23 C 0.140 3.860 24 C -0.185 4.185 25 C 0.572 3.428 26 N -0.824 5.824 27 O -0.563 6.563 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.038 0.962 40 H 0.369 0.631 41 H 0.248 0.752 42 H 0.209 0.791 43 H 0.417 0.583 44 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 -12.155 16.338 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.001 3.999 3 C -0.153 4.153 4 C -0.038 4.038 5 C 0.343 3.657 6 O -0.454 6.454 7 N -0.303 5.303 8 C -0.046 4.046 9 C 0.022 3.978 10 H 0.089 0.911 11 C -0.200 4.200 12 C 0.016 3.984 13 N -0.385 5.385 14 C -0.373 4.373 15 H 0.098 0.902 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.804 3.196 19 H -0.211 1.211 20 H -0.227 1.227 21 H -0.192 1.192 22 N -0.173 5.173 23 C -0.021 4.021 24 C -0.190 4.190 25 C 0.357 3.643 26 N -0.389 5.389 27 O -0.443 6.443 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.166 0.834 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.200 0.800 41 H 0.056 0.944 42 H 0.226 0.774 43 H 0.249 0.751 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.083 -11.382 16.251 19.950 hybrid contribution -0.704 -0.182 -1.434 1.608 sum -2.787 -11.564 14.817 19.001 Atomic orbital electron populations 1.21086 0.87665 1.04067 1.04450 1.20670 0.98512 0.90820 0.89921 1.22041 0.93432 1.00106 0.99672 1.21187 0.91963 0.92419 0.98191 1.18324 0.82960 0.87622 0.76820 1.90720 1.70207 1.31973 1.52477 1.47694 1.04979 1.10398 1.67218 1.22111 0.97646 0.83351 1.01463 1.21441 0.93368 0.86317 0.96716 0.91112 1.21980 1.00243 1.03694 0.94079 1.21213 0.93767 0.98016 0.85365 1.42517 1.06765 1.83928 1.05260 1.19663 0.92263 1.37758 0.87621 0.90216 1.25597 0.96382 1.03458 1.01439 1.69887 1.07897 1.56448 1.28019 0.85111 0.77479 0.77922 0.79065 1.21116 1.22692 1.19195 1.68116 1.39348 0.97809 1.12009 1.23707 0.90255 0.97220 0.90940 1.21125 0.95728 0.94419 1.07761 1.17904 0.86350 0.84432 0.75651 1.43537 1.12426 1.07651 1.75314 1.90770 1.14747 1.87584 1.51190 0.88971 0.90621 0.89019 0.83434 0.93946 0.89944 0.88167 0.91832 0.90252 0.89699 0.94786 0.94448 0.79970 0.94360 0.77444 0.75059 0.74878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.84 71.24 0.63 -2.03 16 2 C 0.01 0.24 5.95 -19.42 -0.12 0.13 16 3 C -0.13 -4.06 9.30 22.58 0.21 -3.85 16 4 C 0.10 3.33 6.57 41.94 0.28 3.61 16 5 C 0.56 22.01 7.36 86.93 0.64 22.65 16 6 O -0.57 -26.33 15.67 -3.70 -0.06 -26.38 16 7 N -0.57 -20.14 2.24 -825.43 -1.85 -22.00 16 8 C 0.10 2.72 8.23 127.77 1.05 3.77 16 9 C 0.12 4.34 2.79 44.99 0.13 4.47 16 10 H 0.07 2.89 6.91 -2.38 -0.02 2.87 16 11 C -0.14 -3.36 9.18 71.98 0.66 -2.70 16 12 C 0.14 5.77 5.56 86.38 0.48 6.25 16 13 N -0.74 -39.44 5.43 -343.45 -1.87 -41.30 16 14 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 15 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 16 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 17 N -0.97 -62.26 13.06 21.65 0.28 -61.98 16 18 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 N -0.46 -13.01 6.14 -183.90 -1.13 -14.14 16 23 C 0.14 2.87 10.70 85.13 0.91 3.78 16 24 C -0.18 -4.13 5.90 -19.93 -0.12 -4.25 16 25 C 0.57 11.23 8.01 86.83 0.70 11.92 16 26 N -0.82 -8.15 8.83 -175.50 -1.55 -9.70 16 27 O -0.56 -14.59 14.30 -3.81 -0.05 -14.64 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 30 H 0.09 2.28 5.93 -2.39 -0.01 2.27 16 31 H 0.15 4.60 7.64 -2.91 -0.02 4.58 16 32 H 0.04 1.43 7.98 -2.39 -0.02 1.41 16 33 H 0.08 1.87 6.44 -2.38 -0.02 1.86 16 34 H 0.10 2.48 5.80 -2.39 -0.01 2.46 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.58 6.67 -2.38 -0.02 1.56 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 40 H 0.37 21.83 7.06 -92.71 -0.65 21.18 16 41 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.21 2.07 6.44 -2.91 -0.02 2.05 16 43 H 0.42 1.74 6.91 -92.71 -0.64 1.10 16 44 H 0.42 2.88 8.93 -92.71 -0.83 2.05 16 Total: -1.00 -82.18 361.75 1.51 -80.67 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -1.05 Total: 33.64 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 6.75 Total: 26.75 kcal Atomic # 7 Polarization: -143.00 SS G_CDS: -6.11 Total: -149.12 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.11 Total: -41.03 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -82.18 1.51 -80.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698856928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.220 kcal (2) G-P(sol) polarization free energy of solvation -82.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds