Wall clock time and date at job start Tue Mar 31 2020 12:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00371 * 2 1 4 4 H 1.48501 * 109.47042 * 270.00225 * 3 2 1 5 5 H 1.48503 * 109.46850 * 30.00028 * 3 2 1 6 6 H 1.48493 * 109.46892 * 150.00039 * 3 2 1 7 7 C 1.38812 * 119.99387 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00609 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00334 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 305.00364 * 11 10 9 13 13 C 1.53002 * 109.47233 * 65.00537 * 11 10 9 14 14 C 1.52997 * 109.47415 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46978 * 300.00098 * 14 13 11 16 16 C 1.53002 * 109.47128 * 59.99726 * 15 14 13 17 17 C 1.52992 * 109.47106 * 300.00123 * 16 15 14 18 18 H 1.08998 * 109.46862 * 180.02562 * 17 16 15 19 19 N 1.46506 * 109.46999 * 299.99813 * 17 16 15 20 20 C 1.34774 * 120.00251 * 275.00369 * 19 17 16 21 21 O 1.21592 * 119.99857 * 359.97438 * 20 19 17 22 22 C 1.47536 * 119.99996 * 180.02562 * 20 19 17 23 23 C 1.39803 * 120.97947 * 359.71747 * 22 20 19 24 24 N 1.32193 * 118.97688 * 179.74408 * 23 22 20 25 25 C 1.31934 * 121.14127 * 0.56586 * 24 23 22 26 26 N 1.31725 * 122.19653 * 359.68665 * 25 24 23 27 27 C 1.32780 * 120.87258 * 0.02562 * 26 25 24 28 28 O 1.35278 * 120.61596 * 179.97438 * 27 26 25 29 29 H 0.96997 * 119.99494 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99300 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46761 * 60.00173 * 10 9 7 32 32 H 1.08991 * 109.47193 * 300.00307 * 10 9 7 33 33 H 1.09000 * 109.46986 * 299.99797 * 13 11 10 34 34 H 1.09002 * 109.47075 * 59.99068 * 13 11 10 35 35 H 1.09002 * 109.47045 * 59.99931 * 14 13 11 36 36 H 1.08998 * 109.47171 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.46698 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.46838 * 299.99316 * 15 14 13 39 39 H 1.09002 * 109.47070 * 60.00059 * 16 15 14 40 40 H 1.08996 * 109.46550 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99832 * 95.00836 * 19 17 16 42 42 H 1.07992 * 120.51010 * 0.02562 * 23 22 20 43 43 H 1.07996 * 118.90280 * 179.70563 * 25 24 23 44 44 H 0.96702 * 114.00342 * 270.03101 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1120 -2.4711 -0.0011 11 6 5.6163 -2.1916 -0.0024 12 1 5.8652 -1.5460 -0.8446 13 6 6.0074 -1.4985 1.3044 14 6 7.5117 -1.2195 1.3035 15 6 8.2751 -2.5396 1.1779 16 6 7.8840 -3.2326 -0.1289 17 6 6.3797 -3.5115 -0.1279 18 1 6.1012 -4.0056 -1.0586 19 7 6.0447 -4.3790 1.0042 20 6 6.1617 -5.7165 0.8861 21 8 6.5450 -6.2031 -0.1602 22 6 5.8238 -6.5901 2.0260 23 6 5.3859 -6.0521 3.2398 24 7 5.0889 -6.8718 4.2335 25 6 5.2100 -8.1787 4.0994 26 7 5.6232 -8.7339 2.9785 27 6 5.9387 -7.9895 1.9253 28 8 6.3629 -8.5651 0.7770 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0007 31 1 3.8483 -3.0428 -0.8909 32 1 3.8490 -3.0425 0.8890 33 1 5.4632 -0.5584 1.3941 34 1 5.7584 -2.1441 2.1467 35 1 7.7609 -0.5741 0.4612 36 1 7.7902 -0.7254 2.2342 37 1 9.3467 -2.3407 1.1768 38 1 8.0258 -3.1849 2.0202 39 1 8.1332 -2.5872 -0.9712 40 1 8.4282 -4.1727 -0.2185 41 1 5.7385 -3.9908 1.8387 42 1 5.2873 -4.9837 3.3622 43 1 4.9620 -8.8146 4.9363 44 1 7.3212 -8.6847 0.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699511776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:57 Heat of formation + Delta-G solvation = -19.952547 kcal Electronic energy + Delta-G solvation = -27550.639591 eV Core-core repulsion = 23696.576930 eV Total energy + Delta-G solvation = -3854.062660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69990 -40.24462 -38.38007 -37.75329 -34.90170 -34.16646 -33.51317 -32.16177 -31.94812 -30.16481 -29.68467 -25.90602 -25.35707 -24.50881 -22.94868 -22.28862 -21.59025 -20.72270 -19.61495 -19.20922 -18.31309 -18.18927 -17.51130 -16.81503 -15.77924 -15.68513 -15.18050 -15.05417 -14.77343 -14.49414 -14.21868 -14.20396 -14.05962 -13.85105 -13.52349 -13.02839 -12.83773 -12.53233 -12.36504 -12.21736 -11.88787 -11.67208 -11.61084 -11.15180 -11.06843 -11.04988 -10.86029 -10.56922 -10.31341 -10.10808 -10.03771 -10.01290 -9.96620 -9.74966 -9.60557 -9.09531 -8.91946 -7.26586 -5.79446 -3.15424 0.01687 0.51415 2.61498 2.82596 3.00481 3.32670 3.36017 3.39511 3.42219 3.63237 3.90150 4.34932 4.44695 4.55627 4.61426 4.69711 4.73697 4.85718 5.02440 5.04236 5.13950 5.40228 5.41749 5.48372 5.51581 5.56588 5.63163 5.71230 5.72899 5.89189 5.97047 6.01449 6.07939 6.16734 6.28192 6.35743 6.38500 6.42603 6.63555 6.68148 7.05708 7.30332 7.55353 7.96614 8.00800 8.39355 9.18229 9.90211 10.09703 11.39039 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.003700 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.461063 B = 7564.870828 C = 8586.640204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.164 3.836 11 C -0.107 4.107 12 H 0.088 0.912 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.157 3.843 18 H 0.093 0.907 19 N -0.709 5.709 20 C 0.568 3.432 21 O -0.519 6.519 22 C -0.258 4.258 23 C 0.200 3.800 24 N -0.526 5.526 25 C 0.339 3.661 26 N -0.545 5.545 27 C 0.418 3.582 28 O -0.453 6.453 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.175 0.825 43 H 0.207 0.793 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.996 -11.651 7.387 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.036 3.964 11 C -0.126 4.126 12 H 0.106 0.894 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.053 3.947 18 H 0.111 0.889 19 N -0.362 5.362 20 C 0.353 3.647 21 O -0.396 6.396 22 C -0.267 4.267 23 C 0.033 3.967 24 N -0.241 5.241 25 C 0.052 3.948 26 N -0.269 5.269 27 C 0.230 3.770 28 O -0.261 6.261 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.235 0.765 42 H 0.192 0.808 43 H 0.223 0.777 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 19.255 -12.678 7.141 24.135 hybrid contribution 0.867 1.903 -0.188 2.100 sum 20.123 -10.775 6.953 23.861 Atomic orbital electron populations 1.69706 1.05129 1.25825 1.57488 1.24675 0.95216 0.97177 1.02014 0.86552 0.79136 0.85025 0.77781 1.21091 1.21742 1.20347 1.19048 0.80640 0.94707 1.43080 0.89334 1.42703 1.04008 1.02099 1.91171 1.20624 0.87726 0.89302 0.98706 1.21706 0.96555 0.95133 0.99242 0.89408 1.21571 0.95214 1.01483 0.96833 1.21595 0.95440 0.97076 1.01823 1.21495 0.99436 0.96715 0.97710 1.21910 0.95554 1.00862 0.98353 1.20990 0.94050 0.90032 0.89665 0.88870 1.46002 1.67585 1.05332 1.17263 1.17533 0.78348 0.82132 0.86675 1.90821 1.45867 1.74612 1.28252 1.22088 1.10963 0.95547 0.98117 1.23532 0.85935 1.00924 0.86289 1.68445 1.17385 1.05568 1.32748 1.25100 0.87265 0.89086 0.93313 1.68154 1.16112 1.42092 1.00584 1.19475 0.87221 0.85850 0.84487 1.84668 1.29138 1.81610 1.30644 0.93039 0.80620 0.95446 0.95754 0.90712 0.92425 0.91855 0.92097 0.92297 0.92306 0.90809 0.91563 0.76479 0.80778 0.77677 0.72604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.23 6.52 56.52 0.37 -5.87 16 7 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.09 5.14 -59.91 -0.31 -17.40 16 10 C 0.16 2.95 5.42 -4.04 -0.02 2.93 16 11 C -0.11 -1.43 2.02 -90.62 -0.18 -1.61 16 12 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.11 -1.37 4.90 -26.73 -0.13 -1.50 16 14 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 15 C -0.12 -1.03 5.77 -26.73 -0.15 -1.18 16 16 C -0.13 -1.27 5.60 -26.73 -0.15 -1.42 16 17 C 0.16 1.84 2.23 -67.93 -0.15 1.69 16 18 H 0.09 1.26 7.57 -51.93 -0.39 0.87 16 19 N -0.71 -7.71 3.57 -54.85 -0.20 -7.91 16 20 C 0.57 6.97 7.74 -12.47 -0.10 6.87 16 21 O -0.52 -7.78 14.98 -15.86 -0.24 -8.02 16 22 C -0.26 -2.82 5.92 -104.56 -0.62 -3.44 16 23 C 0.20 1.90 10.81 -16.81 -0.18 1.71 16 24 N -0.53 -5.19 10.42 -14.29 -0.15 -5.33 16 25 C 0.34 3.00 12.27 -92.09 -1.13 1.87 16 26 N -0.54 -5.83 10.45 -14.32 -0.15 -5.98 16 27 C 0.42 4.75 7.85 -16.18 -0.13 4.63 16 28 O -0.45 -5.02 11.81 -38.67 -0.46 -5.48 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.36 7.90 4.71 -40.82 -0.19 7.71 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.44 7.61 -51.93 -0.40 0.05 16 33 H 0.07 1.08 7.18 -51.93 -0.37 0.71 16 34 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.50 7.60 -51.93 -0.39 0.11 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.40 3.76 4.80 -40.82 -0.20 3.57 16 42 H 0.18 1.24 6.53 -52.49 -0.34 0.90 16 43 H 0.21 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.41 2.62 9.06 45.56 0.41 3.04 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -35.32 354.20 -8.64 -43.96 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.19 Total: 10.04 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -3.36 Total: 2.27 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.03 Total: -65.03 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.69 Total: -13.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.32 -8.64 -43.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699511776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.008 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds