Wall clock time and date at job start Tue Mar 31 2020 12:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00371 * 2 1 4 4 H 1.48501 * 109.47042 * 270.00225 * 3 2 1 5 5 H 1.48503 * 109.46850 * 30.00028 * 3 2 1 6 6 H 1.48493 * 109.46892 * 150.00039 * 3 2 1 7 7 C 1.38812 * 119.99387 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00609 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00334 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 305.00364 * 11 10 9 13 13 C 1.53002 * 109.47233 * 65.00537 * 11 10 9 14 14 C 1.52997 * 109.47415 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46978 * 300.00098 * 14 13 11 16 16 C 1.53002 * 109.47128 * 59.99726 * 15 14 13 17 17 C 1.52992 * 109.47106 * 300.00123 * 16 15 14 18 18 H 1.08998 * 109.46862 * 180.02562 * 17 16 15 19 19 N 1.46506 * 109.46999 * 299.99813 * 17 16 15 20 20 C 1.34774 * 120.00251 * 275.00369 * 19 17 16 21 21 O 1.21592 * 119.99857 * 359.97438 * 20 19 17 22 22 C 1.47536 * 119.99996 * 180.02562 * 20 19 17 23 23 C 1.39803 * 120.97947 * 359.71747 * 22 20 19 24 24 N 1.32193 * 118.97688 * 179.74408 * 23 22 20 25 25 C 1.31934 * 121.14127 * 0.56586 * 24 23 22 26 26 N 1.31725 * 122.19653 * 359.68665 * 25 24 23 27 27 C 1.32780 * 120.87258 * 0.02562 * 26 25 24 28 28 O 1.35278 * 120.61596 * 179.97438 * 27 26 25 29 29 H 0.96997 * 119.99494 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99300 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46761 * 60.00173 * 10 9 7 32 32 H 1.08991 * 109.47193 * 300.00307 * 10 9 7 33 33 H 1.09000 * 109.46986 * 299.99797 * 13 11 10 34 34 H 1.09002 * 109.47075 * 59.99068 * 13 11 10 35 35 H 1.09002 * 109.47045 * 59.99931 * 14 13 11 36 36 H 1.08998 * 109.47171 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.46698 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.46838 * 299.99316 * 15 14 13 39 39 H 1.09002 * 109.47070 * 60.00059 * 16 15 14 40 40 H 1.08996 * 109.46550 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99832 * 95.00836 * 19 17 16 42 42 H 1.07992 * 120.51010 * 0.02562 * 23 22 20 43 43 H 1.07996 * 118.90280 * 179.70563 * 25 24 23 44 44 H 0.96702 * 114.00342 * 270.03101 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1120 -2.4711 -0.0011 11 6 5.6163 -2.1916 -0.0024 12 1 5.8652 -1.5460 -0.8446 13 6 6.0074 -1.4985 1.3044 14 6 7.5117 -1.2195 1.3035 15 6 8.2751 -2.5396 1.1779 16 6 7.8840 -3.2326 -0.1289 17 6 6.3797 -3.5115 -0.1279 18 1 6.1012 -4.0056 -1.0586 19 7 6.0447 -4.3790 1.0042 20 6 6.1617 -5.7165 0.8861 21 8 6.5450 -6.2031 -0.1602 22 6 5.8238 -6.5901 2.0260 23 6 5.3859 -6.0521 3.2398 24 7 5.0889 -6.8718 4.2335 25 6 5.2100 -8.1787 4.0994 26 7 5.6232 -8.7339 2.9785 27 6 5.9387 -7.9895 1.9253 28 8 6.3629 -8.5651 0.7770 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0007 31 1 3.8483 -3.0428 -0.8909 32 1 3.8490 -3.0425 0.8890 33 1 5.4632 -0.5584 1.3941 34 1 5.7584 -2.1441 2.1467 35 1 7.7609 -0.5741 0.4612 36 1 7.7902 -0.7254 2.2342 37 1 9.3467 -2.3407 1.1768 38 1 8.0258 -3.1849 2.0202 39 1 8.1332 -2.5872 -0.9712 40 1 8.4282 -4.1727 -0.2185 41 1 5.7385 -3.9908 1.8387 42 1 5.2873 -4.9837 3.3622 43 1 4.9620 -8.8146 4.9363 44 1 7.3212 -8.6847 0.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699511776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:56 Heat of formation + Delta-G solvation = -46.587415 kcal Electronic energy + Delta-G solvation = -27551.794565 eV Core-core repulsion = 23696.576930 eV Total energy + Delta-G solvation = -3855.217635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50065 -41.19043 -39.34186 -38.61176 -36.60564 -35.05249 -34.32868 -33.86073 -32.90109 -31.61786 -30.65719 -27.20630 -26.37477 -25.30787 -24.39649 -23.42853 -22.51783 -22.00925 -20.40285 -20.14012 -19.78450 -19.09490 -18.82973 -17.59480 -16.80950 -16.63755 -16.51353 -16.16495 -15.83259 -15.70695 -15.48890 -15.09723 -14.95668 -14.86317 -14.74534 -14.58779 -14.15421 -13.81017 -13.34655 -13.15752 -13.05108 -12.92595 -12.73267 -12.55638 -12.44468 -12.14362 -11.89714 -11.84493 -11.83273 -11.40865 -11.22328 -11.05446 -10.94689 -10.88950 -10.81134 -10.52431 -10.03993 -9.29461 -8.02751 -5.36755 -0.75851 -0.25387 1.37715 1.42733 1.50040 1.72279 1.95684 2.22835 2.48923 2.60253 2.97282 3.17463 3.28803 3.42384 3.54736 3.68540 3.76664 3.83054 3.95663 4.16889 4.23928 4.31475 4.34769 4.46089 4.48508 4.57889 4.67848 4.73303 4.90518 5.01678 5.04083 5.08795 5.17562 5.27291 5.29933 5.34207 5.42922 5.49945 5.58945 5.62567 5.74857 6.20830 6.38683 6.42335 6.81513 7.08142 7.08414 7.83253 8.04087 9.19067 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.003700 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.461063 B = 7564.870828 C = 8586.640204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.242 1.242 7 C -0.237 4.237 8 H 0.049 0.951 9 N -0.752 5.752 10 C 0.161 3.839 11 C -0.094 4.094 12 H 0.090 0.910 13 C -0.113 4.113 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.121 4.121 17 C 0.162 3.838 18 H 0.071 0.929 19 N -0.701 5.701 20 C 0.571 3.429 21 O -0.552 6.552 22 C -0.271 4.271 23 C 0.207 3.793 24 N -0.537 5.537 25 C 0.343 3.657 26 N -0.559 5.559 27 C 0.410 3.590 28 O -0.469 6.469 29 H 0.258 0.742 30 H 0.368 0.632 31 H 0.008 0.992 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.407 0.593 42 H 0.197 0.803 43 H 0.242 0.758 44 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.698 -10.768 8.859 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.255 4.255 3 Si 0.784 3.216 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.167 1.167 7 C -0.368 4.368 8 H 0.067 0.933 9 N -0.398 5.398 10 C 0.035 3.965 11 C -0.113 4.113 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.159 4.159 17 C 0.058 3.942 18 H 0.090 0.910 19 N -0.354 5.354 20 C 0.356 3.644 21 O -0.431 6.431 22 C -0.280 4.280 23 C 0.040 3.960 24 N -0.252 5.252 25 C 0.058 3.942 26 N -0.285 5.285 27 C 0.222 3.778 28 O -0.280 6.280 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.026 0.974 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.245 0.755 42 H 0.213 0.787 43 H 0.258 0.742 44 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 22.022 -11.816 8.633 26.441 hybrid contribution -0.040 1.471 -0.645 1.607 sum 21.982 -10.345 7.988 25.574 Atomic orbital electron populations 1.69905 1.07369 1.26764 1.59600 1.25553 0.96104 1.01461 1.02413 0.85383 0.78959 0.79173 0.78101 1.20655 1.22345 1.16653 1.18996 0.82932 0.93245 1.41586 0.93272 1.42641 1.02227 1.04095 1.90882 1.20761 0.90727 0.87268 0.97721 1.21558 0.92906 0.96259 1.00550 0.89174 1.21566 0.96985 1.00429 0.96054 1.21546 0.93318 0.97637 1.02731 1.21469 1.00257 0.96120 0.96941 1.21845 0.93436 1.01028 0.99629 1.20864 0.95388 0.88898 0.89089 0.91049 1.45915 1.67181 1.04969 1.17347 1.17701 0.77689 0.82398 0.86583 1.90801 1.47523 1.75168 1.29573 1.21966 1.12583 0.95222 0.98279 1.23874 0.84614 1.01967 0.85546 1.68549 1.17895 1.06049 1.32737 1.25864 0.85508 0.89300 0.93572 1.68237 1.16973 1.42277 1.00982 1.19668 0.87209 0.86234 0.84673 1.84613 1.30771 1.81664 1.30970 0.93340 0.79756 0.97408 0.95487 0.92657 0.91305 0.91603 0.90697 0.90702 0.91756 0.90040 0.92005 0.75487 0.78668 0.74190 0.70744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 3 Si 0.96 44.24 27.74 68.60 1.90 46.14 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.24 -9.71 6.52 99.48 0.65 -9.06 16 7 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 9 N -0.75 -33.66 5.14 -343.46 -1.76 -35.43 16 10 C 0.16 5.79 5.42 86.38 0.47 6.26 16 11 C -0.09 -2.35 2.02 -10.79 -0.02 -2.37 16 12 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.11 -2.40 4.90 30.59 0.15 -2.25 16 14 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16 15 C -0.11 -1.56 5.77 30.60 0.18 -1.38 16 16 C -0.12 -2.11 5.60 30.59 0.17 -1.94 16 17 C 0.16 3.62 2.23 44.99 0.10 3.72 16 18 H 0.07 1.94 7.57 -2.39 -0.02 1.92 16 19 N -0.70 -14.41 3.57 -445.71 -1.59 -16.00 16 20 C 0.57 13.71 7.74 86.70 0.67 14.38 16 21 O -0.55 -16.66 14.98 16.21 0.24 -16.42 16 22 C -0.27 -5.72 5.92 -19.83 -0.12 -5.84 16 23 C 0.21 3.59 10.81 85.02 0.92 4.51 16 24 N -0.54 -9.56 10.42 -199.13 -2.07 -11.63 16 25 C 0.34 5.44 12.27 180.86 2.22 7.66 16 26 N -0.56 -11.38 10.45 -312.04 -3.26 -14.65 16 27 C 0.41 9.16 7.85 85.17 0.67 9.83 16 28 O -0.47 -10.48 11.81 -65.41 -0.77 -11.25 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.37 15.38 4.71 -92.70 -0.44 14.95 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 32 H 0.03 0.97 7.61 -2.39 -0.02 0.95 16 33 H 0.05 1.43 7.18 -2.39 -0.02 1.41 16 34 H 0.07 1.30 6.50 -2.39 -0.02 1.28 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.86 7.60 -2.39 -0.02 0.84 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.41 6.89 4.80 -92.71 -0.44 6.44 16 42 H 0.20 2.33 6.53 -2.91 -0.02 2.32 16 43 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.43 5.53 9.06 -74.06 -0.67 4.86 16 Total: -1.00 -78.16 354.20 -0.63 -78.79 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -0.55 Total: 28.31 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.93 Total: 15.12 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -8.39 Total: -140.70 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.53 Total: -27.67 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.14 kcal Total: -78.16 -0.63 -78.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699511776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.204 kcal (2) G-P(sol) polarization free energy of solvation -78.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds