Wall clock time and date at job start Tue Mar 31 2020 12:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21568 * 119.99816 * 0.02562 * 14 13 11 16 16 C 1.47719 * 119.99890 * 179.97438 * 14 13 11 17 17 C 1.41291 * 125.95033 * 179.97438 * 16 14 13 18 18 C 1.34859 * 107.70947 * 179.97438 * 17 16 14 19 19 N 1.36395 * 107.91970 * 0.11480 * 18 17 16 20 20 N 1.32116 * 125.95622 * 359.69676 * 16 14 13 21 21 C 1.46731 * 123.62131 * 179.76500 * 19 18 17 22 22 C 1.53536 * 107.95673 * 343.03457 * 21 19 18 23 23 C 1.53227 * 109.29907 * 47.28933 * 22 21 19 24 24 O 1.36031 * 128.63929 * 180.16472 * 18 17 16 25 25 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 26 26 C 1.52999 * 117.50412 * 248.74803 * 25 11 10 27 27 C 1.53002 * 117.50104 * 180.08511 * 25 11 10 28 28 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 31 31 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 32 32 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 33 33 H 1.08001 * 126.14799 * 359.95220 * 17 16 14 34 34 H 1.08999 * 109.76531 * 223.41993 * 21 19 18 35 35 H 1.08993 * 109.80307 * 102.67379 * 21 19 18 36 36 H 1.08997 * 109.50021 * 287.33803 * 22 21 19 37 37 H 1.09003 * 109.49473 * 167.23672 * 22 21 19 38 38 H 1.09002 * 109.49707 * 175.46193 * 23 22 21 39 39 H 1.09000 * 109.50717 * 55.34696 * 23 22 21 40 40 H 1.09003 * 115.54830 * 34.41759 * 25 11 10 41 41 H 1.09003 * 117.49323 * 359.97438 * 26 25 11 42 42 H 1.09003 * 117.50071 * 145.01968 * 26 25 11 43 43 H 1.09000 * 117.50257 * 214.97832 * 27 25 11 44 44 H 1.09002 * 117.49965 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4215 -5.8617 -0.0981 16 6 -2.0064 -5.0912 -2.2242 17 6 -3.3123 -5.6246 -2.3053 18 6 -3.8263 -5.2709 -3.5009 19 7 -2.8842 -4.5399 -4.1631 20 7 -1.7608 -4.4352 -3.3444 21 6 -3.0836 -3.9837 -5.5062 22 6 -4.2761 -4.7084 -6.1465 23 6 -5.4355 -4.7576 -5.1458 24 8 -5.0527 -5.5556 -4.0159 25 6 1.8249 -6.1410 -0.1280 26 6 1.6674 -6.9257 -1.4320 27 6 1.0021 -7.4308 -0.1493 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 2.6855 -3.7140 -0.8911 31 1 2.6842 -3.7148 0.8888 32 1 0.4176 -4.1769 -1.9198 33 1 -3.8093 -6.2107 -1.5465 34 1 -2.1889 -4.1434 -6.1079 35 1 -3.2950 -2.9167 -5.4363 36 1 -3.9836 -5.7236 -6.4147 37 1 -4.5904 -4.1713 -7.0414 38 1 -6.3100 -5.1992 -5.6237 39 1 -5.6729 -3.7469 -4.8139 40 1 2.7971 -6.1723 0.3638 41 1 1.0213 -6.5006 -2.2002 42 1 2.5359 -7.4735 -1.7978 43 1 1.4332 -8.3108 0.3282 44 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699578848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:50 Heat of formation + Delta-G solvation = 57.108672 kcal Electronic energy + Delta-G solvation = -27257.627821 eV Core-core repulsion = 23406.906786 eV Total energy + Delta-G solvation = -3850.721035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86851 -39.87056 -38.55840 -36.91195 -34.89987 -34.82717 -33.24254 -31.44650 -30.74230 -29.50352 -28.19921 -26.61307 -24.30684 -23.83381 -22.75909 -22.15238 -21.40378 -20.21134 -20.03183 -19.49798 -18.38860 -17.20143 -16.83454 -16.34405 -15.93051 -15.84733 -15.64631 -15.13999 -15.04946 -14.68367 -14.43790 -14.12371 -13.71778 -13.43862 -13.31712 -13.17447 -12.85333 -12.65682 -12.04110 -11.93792 -11.66713 -11.57678 -11.52656 -11.29513 -11.12555 -10.85242 -10.80668 -10.77310 -10.20453 -10.09131 -9.77531 -9.70967 -9.49890 -9.19920 -8.86602 -8.58408 -8.49198 -6.90821 -5.72629 -3.02525 1.43087 2.02202 2.18274 2.75786 3.45479 3.49011 3.50170 3.51233 3.64468 3.82739 4.02836 4.14715 4.39614 4.43841 4.60123 4.73939 4.84681 4.96382 5.00338 5.08112 5.25761 5.28833 5.31099 5.34984 5.42977 5.59358 5.65517 5.82630 5.84474 5.90151 5.94405 6.07903 6.10285 6.31178 6.38378 6.41653 6.54157 6.60520 6.74973 6.97404 7.10407 7.35640 7.71830 7.93705 8.44609 8.51571 9.56387 10.12932 10.48334 11.49503 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.004101 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.596103 B = 6825.989378 C = 8917.944758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.094 0.906 13 N -0.691 5.691 14 C 0.602 3.398 15 O -0.528 6.528 16 C 0.056 3.944 17 C -0.226 4.226 18 C 0.258 3.742 19 N -0.394 5.394 20 N -0.233 5.233 21 C 0.127 3.873 22 C -0.174 4.174 23 C 0.049 3.951 24 O -0.287 6.287 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.187 4.187 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.412 0.588 33 H 0.165 0.835 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 -13.426 -13.603 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.112 0.888 13 N -0.342 5.342 14 C 0.386 3.614 15 O -0.403 6.403 16 C -0.112 4.112 17 C -0.256 4.256 18 C 0.092 3.908 19 N -0.191 5.191 20 N -0.063 5.063 21 C 0.006 3.994 22 C -0.212 4.212 23 C -0.027 4.027 24 O -0.194 6.194 25 C -0.180 4.180 26 C -0.215 4.215 27 C -0.223 4.223 28 H 0.065 0.935 29 H 0.221 0.779 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.248 0.752 33 H 0.182 0.818 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.740 -13.179 -13.563 20.434 hybrid contribution -0.269 1.019 -0.312 1.099 sum -8.009 -12.160 -13.876 20.113 Atomic orbital electron populations 1.69669 1.05089 1.25679 1.57411 1.24736 0.95463 0.97631 1.02918 0.86276 0.78493 0.83620 0.77817 1.21322 1.21780 1.21260 1.19162 0.90978 0.84073 1.43068 0.91182 1.42344 1.06034 0.99698 1.89543 1.20915 0.93008 0.85045 0.99018 1.20832 0.90158 0.93031 0.89710 0.88782 1.45856 1.13792 1.53409 1.21117 1.16815 0.80851 0.79253 0.84517 1.90718 1.75990 1.41834 1.31790 1.22019 0.95433 0.99327 0.94406 1.20170 0.95744 1.13185 0.96460 1.19413 0.83020 0.96444 0.91918 1.49286 1.11073 1.43823 1.14929 1.77679 1.04957 1.21437 1.02239 1.21969 0.99999 0.98684 0.78712 1.22640 0.95058 1.03498 1.00050 1.23114 0.97698 0.96706 0.85172 1.86641 1.27816 1.58146 1.46825 1.22692 1.00819 0.92397 1.02080 1.22900 1.02953 1.04002 0.91692 1.23345 1.01580 0.96706 1.00717 0.93524 0.77943 0.95544 0.94670 0.75199 0.81771 0.87774 0.88917 0.89284 0.87142 0.86297 0.90781 0.87139 0.89013 0.89520 0.89692 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.60 5.43 -59.91 -0.33 -18.92 16 10 C 0.15 2.97 5.80 -4.04 -0.02 2.95 16 11 C 0.17 2.96 2.59 -67.94 -0.18 2.78 16 12 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 13 N -0.69 -12.23 3.05 -54.79 -0.17 -12.40 16 14 C 0.60 11.00 6.66 -12.39 -0.08 10.92 16 15 O -0.53 -10.47 13.93 5.31 0.07 -10.40 16 16 C 0.06 0.96 7.10 -82.71 -0.59 0.38 16 17 C -0.23 -3.53 10.58 -39.62 -0.42 -3.95 16 18 C 0.26 3.55 7.57 -16.72 -0.13 3.43 16 19 N -0.39 -5.27 4.08 -60.92 -0.25 -5.52 16 20 N -0.23 -3.85 12.32 33.43 0.41 -3.43 16 21 C 0.13 1.07 7.41 -3.64 -0.03 1.04 16 22 C -0.17 -0.92 6.16 -26.34 -0.16 -1.08 16 23 C 0.05 0.32 7.00 37.27 0.26 0.58 16 24 O -0.29 -3.23 10.65 -19.84 -0.21 -3.45 16 25 C -0.16 -2.38 5.70 -90.62 -0.52 -2.90 16 26 C -0.18 -2.47 9.74 -26.69 -0.26 -2.73 16 27 C -0.19 -2.71 9.82 -26.69 -0.26 -2.97 16 28 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.39 10.57 7.33 -40.82 -0.30 10.27 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 7.41 8.30 -40.82 -0.34 7.07 16 33 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 1.49 8.11 -51.93 -0.42 1.07 16 41 H 0.09 1.35 6.67 -51.93 -0.35 1.01 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.12 1.95 5.01 -51.93 -0.26 1.69 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -34.22 363.65 -8.17 -42.39 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.26 Total: 15.45 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.63 Total: 1.09 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: 0.40 Total: -68.09 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.14 Total: -13.84 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.22 -8.17 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699578848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.499 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds