Wall clock time and date at job start Tue Mar 31 2020 12:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21568 * 119.99816 * 0.02562 * 14 13 11 16 16 C 1.47719 * 119.99890 * 179.97438 * 14 13 11 17 17 C 1.41291 * 125.95033 * 179.97438 * 16 14 13 18 18 C 1.34859 * 107.70947 * 179.97438 * 17 16 14 19 19 N 1.36395 * 107.91970 * 0.11480 * 18 17 16 20 20 N 1.32116 * 125.95622 * 359.69676 * 16 14 13 21 21 C 1.46731 * 123.62131 * 179.76500 * 19 18 17 22 22 C 1.53536 * 107.95673 * 343.03457 * 21 19 18 23 23 C 1.53227 * 109.29907 * 47.28933 * 22 21 19 24 24 O 1.36031 * 128.63929 * 180.16472 * 18 17 16 25 25 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 26 26 C 1.52999 * 117.50412 * 248.74803 * 25 11 10 27 27 C 1.53002 * 117.50104 * 180.08511 * 25 11 10 28 28 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 31 31 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 32 32 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 33 33 H 1.08001 * 126.14799 * 359.95220 * 17 16 14 34 34 H 1.08999 * 109.76531 * 223.41993 * 21 19 18 35 35 H 1.08993 * 109.80307 * 102.67379 * 21 19 18 36 36 H 1.08997 * 109.50021 * 287.33803 * 22 21 19 37 37 H 1.09003 * 109.49473 * 167.23672 * 22 21 19 38 38 H 1.09002 * 109.49707 * 175.46193 * 23 22 21 39 39 H 1.09000 * 109.50717 * 55.34696 * 23 22 21 40 40 H 1.09003 * 115.54830 * 34.41759 * 25 11 10 41 41 H 1.09003 * 117.49323 * 359.97438 * 26 25 11 42 42 H 1.09003 * 117.50071 * 145.01968 * 26 25 11 43 43 H 1.09000 * 117.50257 * 214.97832 * 27 25 11 44 44 H 1.09002 * 117.49965 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4215 -5.8617 -0.0981 16 6 -2.0064 -5.0912 -2.2242 17 6 -3.3123 -5.6246 -2.3053 18 6 -3.8263 -5.2709 -3.5009 19 7 -2.8842 -4.5399 -4.1631 20 7 -1.7608 -4.4352 -3.3444 21 6 -3.0836 -3.9837 -5.5062 22 6 -4.2761 -4.7084 -6.1465 23 6 -5.4355 -4.7576 -5.1458 24 8 -5.0527 -5.5556 -4.0159 25 6 1.8249 -6.1410 -0.1280 26 6 1.6674 -6.9257 -1.4320 27 6 1.0021 -7.4308 -0.1493 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 2.6855 -3.7140 -0.8911 31 1 2.6842 -3.7148 0.8888 32 1 0.4176 -4.1769 -1.9198 33 1 -3.8093 -6.2107 -1.5465 34 1 -2.1889 -4.1434 -6.1079 35 1 -3.2950 -2.9167 -5.4363 36 1 -3.9836 -5.7236 -6.4147 37 1 -4.5904 -4.1713 -7.0414 38 1 -6.3100 -5.1992 -5.6237 39 1 -5.6729 -3.7469 -4.8139 40 1 2.7971 -6.1723 0.3638 41 1 1.0213 -6.5006 -2.2002 42 1 2.5359 -7.4735 -1.7978 43 1 1.4332 -8.3108 0.3282 44 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699578848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:49 Heat of formation + Delta-G solvation = 32.307569 kcal Electronic energy + Delta-G solvation = -27258.703278 eV Core-core repulsion = 23406.906786 eV Total energy + Delta-G solvation = -3851.796492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.91658 -41.20705 -39.52109 -38.27765 -36.53913 -35.67270 -34.85520 -33.14574 -31.94892 -30.59385 -29.83550 -27.46889 -26.02661 -25.08099 -23.81887 -23.43482 -22.92094 -21.41387 -21.03449 -20.70733 -19.54358 -19.10102 -17.86533 -17.42822 -17.24409 -17.07221 -16.73647 -16.48790 -16.18585 -15.79263 -15.66089 -15.26459 -15.15782 -14.96077 -14.91731 -14.41372 -14.33318 -13.67893 -13.37373 -13.12160 -12.85785 -12.71167 -12.68271 -12.65124 -12.41086 -12.29131 -12.13602 -12.12602 -11.86061 -11.82917 -11.42817 -11.08268 -10.95299 -10.79355 -10.29548 -9.99369 -9.59964 -9.00393 -7.92306 -5.22631 0.19900 1.00501 1.08096 1.47965 1.51516 1.57331 1.79770 2.26073 2.29982 2.56924 2.96307 3.03828 3.41604 3.50145 3.55341 3.65224 3.92681 3.95763 4.01394 4.10069 4.17968 4.19952 4.28612 4.40525 4.46426 4.50978 4.52099 4.57112 4.62950 4.70099 4.84769 4.88574 4.90422 5.05971 5.07423 5.14073 5.23760 5.28310 5.41300 5.50019 5.53291 6.15089 6.17560 6.27163 6.52793 7.08721 7.34354 8.07852 8.31848 9.30706 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.004101 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.596103 B = 6825.989378 C = 8917.944758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.151 3.849 11 C 0.175 3.825 12 H 0.069 0.931 13 N -0.688 5.688 14 C 0.601 3.399 15 O -0.551 6.551 16 C 0.035 3.965 17 C -0.253 4.253 18 C 0.271 3.729 19 N -0.386 5.386 20 N -0.256 5.256 21 C 0.108 3.892 22 C -0.160 4.160 23 C 0.034 3.966 24 O -0.296 6.296 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.187 4.187 28 H 0.249 0.751 29 H 0.373 0.627 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.410 0.590 33 H 0.164 0.836 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 -13.752 -15.717 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.024 3.976 11 C 0.070 3.930 12 H 0.087 0.913 13 N -0.337 5.337 14 C 0.385 3.615 15 O -0.428 6.428 16 C -0.131 4.131 17 C -0.283 4.283 18 C 0.103 3.897 19 N -0.184 5.184 20 N -0.088 5.088 21 C -0.010 4.010 22 C -0.198 4.198 23 C -0.040 4.040 24 O -0.203 6.203 25 C -0.183 4.183 26 C -0.203 4.203 27 C -0.224 4.224 28 H 0.058 0.942 29 H 0.205 0.795 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.246 0.754 33 H 0.181 0.819 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.095 0.905 40 H 0.150 0.850 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.126 0.874 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.129 -13.530 -15.700 21.917 hybrid contribution -0.532 1.090 0.233 1.235 sum -7.661 -12.440 -15.466 21.276 Atomic orbital electron populations 1.69852 1.06790 1.25975 1.59460 1.25578 0.96264 1.01168 1.03632 0.85190 0.77103 0.79039 0.78263 1.20143 1.22506 1.20392 1.19622 0.91640 0.85077 1.41285 0.90122 1.42534 1.05611 1.01031 1.89536 1.21048 0.93272 0.83648 0.99629 1.20662 0.89589 0.93925 0.88776 0.91252 1.45805 1.13820 1.53259 1.20864 1.17014 0.80987 0.78792 0.84703 1.90692 1.76433 1.42895 1.32814 1.21864 0.95953 1.00761 0.94568 1.20266 0.95720 1.14457 0.97860 1.19339 0.83923 0.95097 0.91314 1.49677 1.09935 1.42930 1.15875 1.77565 1.06786 1.21864 1.02558 1.22546 1.02206 0.99586 0.76669 1.22671 0.92859 1.03720 1.00598 1.23613 0.99393 0.96813 0.84142 1.86665 1.26169 1.58966 1.48486 1.22630 1.01307 0.90794 1.03550 1.22942 1.03312 1.03192 0.90876 1.23298 1.00259 0.97228 1.01584 0.94221 0.79545 0.94314 0.93733 0.75418 0.81884 0.86594 0.88060 0.89212 0.83002 0.82798 0.90465 0.85008 0.90303 0.86922 0.87392 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -38.42 5.43 -343.45 -1.87 -40.29 16 10 C 0.15 6.02 5.80 86.38 0.50 6.52 16 11 C 0.18 6.31 2.59 44.99 0.12 6.42 16 12 H 0.07 2.84 7.58 -2.39 -0.02 2.83 16 13 N -0.69 -25.35 3.05 -445.54 -1.36 -26.71 16 14 C 0.60 23.23 6.66 86.75 0.58 23.81 16 15 O -0.55 -23.23 13.93 -3.93 -0.05 -23.29 16 16 C 0.03 1.26 7.10 42.36 0.30 1.56 16 17 C -0.25 -8.31 10.58 22.24 0.24 -8.07 16 18 C 0.27 7.48 7.57 83.21 0.63 8.11 16 19 N -0.39 -10.23 4.08 -457.15 -1.87 -12.09 16 20 N -0.26 -8.72 12.32 -48.15 -0.59 -9.31 16 21 C 0.11 1.63 7.41 86.52 0.64 2.27 16 22 C -0.16 -1.17 6.16 30.85 0.19 -0.98 16 23 C 0.03 0.36 7.00 72.06 0.50 0.86 16 24 O -0.30 -6.31 10.65 -93.90 -1.00 -7.31 16 25 C -0.16 -4.70 5.70 -10.80 -0.06 -4.76 16 26 C -0.17 -4.38 9.74 30.62 0.30 -4.09 16 27 C -0.19 -5.30 9.82 30.62 0.30 -5.00 16 28 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.37 21.12 7.33 -92.71 -0.68 20.44 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.41 15.35 8.30 -92.71 -0.77 14.58 16 33 H 0.16 5.14 8.06 -2.91 -0.02 5.12 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.13 3.24 8.11 -2.39 -0.02 3.22 16 41 H 0.08 2.31 6.67 -2.39 -0.02 2.30 16 42 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.09 3.14 5.01 -2.39 -0.01 3.13 16 Total: -1.00 -76.31 363.65 0.71 -75.60 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -0.41 Total: 45.54 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.54 Total: 9.94 kcal Atomic # 7 Polarization: -143.60 SS G_CDS: -5.40 Total: -149.00 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.05 Total: -30.60 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -76.31 0.71 -75.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699578848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.908 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds