Wall clock time and date at job start Tue Mar 31 2020 12:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35470 * 117.00187 * 2 1 4 4 N 1.32424 * 119.11659 * 359.97438 * 3 2 1 5 5 C 1.32123 * 120.97356 * 180.02562 * 4 3 2 6 6 C 1.38806 * 119.22756 * 0.02562 * 5 4 3 7 7 C 1.39465 * 118.37984 * 359.97438 * 6 5 4 8 8 C 1.48465 * 120.51051 * 180.02562 * 7 6 5 9 9 O 1.21477 * 120.00201 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00058 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.64391 * 359.97438 * 10 8 7 12 12 C 1.54330 * 107.26840 * 178.97562 * 11 10 8 13 13 C 1.55155 * 102.94292 * 337.81024 * 12 11 10 14 14 C 1.53001 * 111.03361 * 277.41024 * 13 12 11 15 15 C 1.52998 * 111.00688 * 153.57723 * 13 12 11 16 16 N 1.46501 * 109.47426 * 186.34979 * 15 13 12 17 17 C 1.36930 * 120.00164 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99674 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99924 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47059 * 89.99979 * 21 19 17 23 23 H 1.48499 * 109.47276 * 209.99640 * 21 19 17 24 24 H 1.48503 * 109.47121 * 329.99930 * 21 19 17 25 25 C 1.47420 * 125.65180 * 180.02562 * 10 8 7 26 26 N 1.32085 * 119.11286 * 180.29350 * 3 2 1 27 27 H 1.09000 * 109.47042 * 300.00464 * 1 2 3 28 28 H 1.09006 * 109.46702 * 60.00205 * 1 2 3 29 29 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.08007 * 120.39027 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.80911 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.88351 * 298.39161 * 11 10 8 33 33 H 1.08998 * 109.88379 * 59.55951 * 11 10 8 34 34 H 1.08998 * 110.71700 * 96.16950 * 12 11 10 35 35 H 1.08991 * 110.72004 * 219.44241 * 12 11 10 36 36 H 1.09001 * 109.46965 * 173.66697 * 14 13 12 37 37 H 1.08997 * 109.47448 * 293.67183 * 14 13 12 38 38 H 1.09005 * 109.46962 * 53.67224 * 14 13 12 39 39 H 1.09004 * 109.46972 * 306.34484 * 15 13 12 40 40 H 1.08998 * 109.47042 * 66.34116 * 15 13 12 41 41 H 0.97000 * 119.99512 * 359.97438 * 16 15 13 42 42 H 0.96994 * 120.00400 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.36858 * 322.93289 * 25 10 8 44 44 H 1.08999 * 110.36307 * 85.25503 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3058 2.3064 -0.0005 5 6 1.8672 3.5024 -0.0010 6 6 3.2518 3.6012 -0.0016 7 6 4.0003 2.4245 -0.0010 8 6 5.4841 2.4751 -0.0010 9 8 6.0554 3.5472 -0.0019 10 7 6.1974 1.3315 -0.0010 11 6 5.6370 -0.0278 -0.0004 12 6 6.8247 -1.0129 -0.0269 13 6 7.9763 -0.1533 -0.6119 14 6 7.9063 -0.1080 -2.1397 15 6 9.3383 -0.6691 -0.1434 16 7 10.3883 0.2507 -0.5880 17 6 11.6983 -0.0070 -0.2839 18 1 11.9574 -0.8883 0.2842 19 6 12.6931 0.8644 -0.7056 20 7 12.3774 1.9380 -1.3984 21 14 14.4801 0.5131 -0.2901 22 1 15.0871 -0.3077 -1.3686 23 1 15.2208 1.7943 -0.1668 24 1 14.5532 -0.2266 0.9955 25 6 7.6685 1.2364 -0.0004 26 7 3.3640 1.2557 -0.0059 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2560 4.3929 -0.0019 31 1 3.7375 4.5659 -0.0016 32 1 5.0455 -0.1845 0.9016 33 1 5.0153 -0.1728 -0.8839 34 1 7.0686 -1.3500 0.9805 35 1 6.6080 -1.8608 -0.6766 36 1 8.6540 0.5895 -2.5171 37 1 8.1009 -1.1022 -2.5420 38 1 6.9139 0.2210 -2.4483 39 1 9.3480 -0.7328 0.9447 40 1 9.5178 -1.6574 -0.5668 41 1 10.1555 1.0420 -1.0986 42 1 13.0725 2.5471 -1.6928 43 1 8.1000 2.0257 -0.6160 44 1 8.0521 1.2961 1.0181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699840531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:47 Heat of formation + Delta-G solvation = 11.415421 kcal Electronic energy + Delta-G solvation = -27028.071000 eV Core-core repulsion = 23175.368557 eV Total energy + Delta-G solvation = -3852.702443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72445 -40.07430 -38.70217 -37.85197 -34.93827 -34.22803 -32.58232 -31.82257 -30.45851 -29.05384 -28.01948 -27.05162 -26.00341 -25.01605 -23.97676 -23.25509 -21.91191 -20.50560 -18.85326 -18.52519 -18.34003 -17.19865 -16.86375 -16.61613 -16.00265 -15.91932 -15.42296 -14.93850 -14.70011 -14.50826 -14.28084 -14.08631 -13.85562 -13.54875 -13.17492 -12.88074 -12.65002 -12.44992 -12.13670 -12.02240 -11.77454 -11.67753 -11.63444 -11.40736 -11.20316 -10.99927 -10.79851 -10.54871 -10.42886 -10.32292 -10.26702 -9.91071 -9.60901 -9.49293 -9.45376 -8.84559 -8.51057 -6.88555 -5.72477 -3.01292 0.18622 0.62039 2.09566 2.61948 2.83398 3.46486 3.50521 3.51480 3.53425 3.55775 4.03318 4.20925 4.55324 4.60214 4.75447 4.81631 4.83486 4.85832 4.87987 5.11270 5.16770 5.25666 5.47336 5.50369 5.61342 5.63542 5.72678 5.88945 5.98955 6.09915 6.12171 6.18014 6.20393 6.25090 6.31986 6.42703 6.52947 6.66720 6.70524 6.77169 6.86857 7.46944 7.57134 7.73490 8.01790 8.45983 9.57339 10.14590 10.49178 11.50272 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.002711 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.508565 B =10324.862109 C =11082.851809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.287 6.287 3 C 0.495 3.505 4 N -0.558 5.558 5 C 0.189 3.811 6 C -0.211 4.211 7 C 0.181 3.819 8 C 0.576 3.424 9 O -0.520 6.520 10 N -0.589 5.589 11 C 0.118 3.882 12 C -0.126 4.126 13 C -0.079 4.079 14 C -0.129 4.129 15 C 0.170 3.830 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.119 3.881 26 N -0.495 5.495 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.181 0.819 31 H 0.165 0.835 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.087 0.913 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.972 -1.981 2.504 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.188 6.188 3 C 0.193 3.807 4 N -0.288 5.288 5 C 0.022 3.978 6 C -0.234 4.234 7 C 0.033 3.967 8 C 0.361 3.639 9 O -0.396 6.396 10 N -0.321 5.321 11 C -0.005 4.005 12 C -0.165 4.165 13 C -0.080 4.080 14 C -0.186 4.186 15 C 0.042 3.958 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.002 4.002 26 N -0.224 5.224 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.198 0.802 31 H 0.183 0.817 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.926 -2.652 2.569 27.178 hybrid contribution 1.000 0.959 0.047 1.386 sum -25.927 -1.693 2.616 26.113 Atomic orbital electron populations 1.23018 0.75507 1.03728 1.02842 1.86119 1.23440 1.22284 1.86990 1.20660 0.85847 0.84943 0.89296 1.67989 1.41695 0.99451 1.19670 1.23073 0.92181 0.94453 0.88084 1.22828 0.95524 1.01183 1.03873 1.21529 0.95022 0.87987 0.92189 1.17300 0.84234 0.83611 0.78769 1.90849 1.69899 1.28280 1.50532 1.48409 1.08415 1.05910 1.69319 1.22128 0.95548 0.80003 1.02781 1.22818 0.94003 0.97603 1.02057 1.21973 0.95975 0.93737 0.96278 1.21671 1.01089 1.02432 0.93416 1.20596 0.85291 0.93525 0.96370 1.42379 1.02125 1.26994 1.66066 1.19206 0.83360 1.06034 1.28454 0.91206 1.24735 0.97948 0.97328 1.00926 1.69653 1.32067 1.14042 1.42295 0.86202 0.85322 0.76881 0.77841 1.21796 1.21825 1.20812 1.22473 0.77240 0.98435 1.02024 1.67791 1.07765 1.29014 1.17818 0.91846 0.91846 0.87700 0.80169 0.81698 0.90848 0.90609 0.90421 0.89915 0.91317 0.92421 0.93642 0.96052 0.95716 0.78099 0.93500 0.89453 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.36 101.05 1.05 1.32 16 2 O -0.29 -2.97 10.56 -18.10 -0.19 -3.16 16 3 C 0.50 5.69 8.48 -91.36 -0.77 4.91 16 4 N -0.56 -5.48 9.20 -14.74 -0.14 -5.62 16 5 C 0.19 1.49 11.30 -17.22 -0.19 1.30 16 6 C -0.21 -2.11 9.71 -38.91 -0.38 -2.48 16 7 C 0.18 2.34 6.75 -82.65 -0.56 1.79 16 8 C 0.58 9.08 7.86 -12.04 -0.09 8.99 16 9 O -0.52 -9.65 16.68 5.39 0.09 -9.56 16 10 N -0.59 -9.02 3.31 -171.39 -0.57 -9.58 16 11 C 0.12 1.52 5.03 -3.06 -0.02 1.50 16 12 C -0.13 -1.59 5.92 -24.89 -0.15 -1.74 16 13 C -0.08 -1.26 0.62 -152.36 -0.09 -1.35 16 14 C -0.13 -2.06 8.42 37.16 0.31 -1.74 16 15 C 0.17 3.32 5.23 -4.04 -0.02 3.30 16 16 N -0.73 -18.19 5.17 -59.91 -0.31 -18.50 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.12 2.06 5.33 -2.53 -0.01 2.04 16 26 N -0.50 -6.30 7.09 -11.29 -0.08 -6.38 16 27 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.18 0.67 8.06 -52.48 -0.42 0.25 16 31 H 0.17 1.47 7.73 -52.49 -0.41 1.06 16 32 H 0.07 0.92 7.57 -51.93 -0.39 0.52 16 33 H 0.08 0.97 7.43 -51.93 -0.39 0.58 16 34 H 0.08 0.93 8.01 -51.93 -0.42 0.52 16 35 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.07 1.27 7.19 -51.93 -0.37 0.90 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 39 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.38 10.12 6.31 -40.82 -0.26 9.86 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.09 1.72 7.77 -51.93 -0.40 1.32 16 44 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -33.75 365.27 -7.54 -41.29 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.37 Total: 5.60 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -1.18 Total: 10.53 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -0.37 Total: -67.77 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.10 Total: -12.72 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.75 -7.54 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699840531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.705 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds