Wall clock time and date at job start Tue Mar 31 2020 12:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35470 * 117.00187 * 2 1 4 4 N 1.32424 * 119.11659 * 359.97438 * 3 2 1 5 5 C 1.32123 * 120.97356 * 180.02562 * 4 3 2 6 6 C 1.38806 * 119.22756 * 0.02562 * 5 4 3 7 7 C 1.39465 * 118.37984 * 359.97438 * 6 5 4 8 8 C 1.48465 * 120.51051 * 180.02562 * 7 6 5 9 9 O 1.21477 * 120.00201 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00058 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.64391 * 359.97438 * 10 8 7 12 12 C 1.54330 * 107.26840 * 178.97562 * 11 10 8 13 13 C 1.55155 * 102.94292 * 337.81024 * 12 11 10 14 14 C 1.53001 * 111.03361 * 277.41024 * 13 12 11 15 15 C 1.52998 * 111.00688 * 153.57723 * 13 12 11 16 16 N 1.46501 * 109.47426 * 186.34979 * 15 13 12 17 17 C 1.36930 * 120.00164 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99674 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99924 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47059 * 89.99979 * 21 19 17 23 23 H 1.48499 * 109.47276 * 209.99640 * 21 19 17 24 24 H 1.48503 * 109.47121 * 329.99930 * 21 19 17 25 25 C 1.47420 * 125.65180 * 180.02562 * 10 8 7 26 26 N 1.32085 * 119.11286 * 180.29350 * 3 2 1 27 27 H 1.09000 * 109.47042 * 300.00464 * 1 2 3 28 28 H 1.09006 * 109.46702 * 60.00205 * 1 2 3 29 29 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.08007 * 120.39027 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.80911 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.88351 * 298.39161 * 11 10 8 33 33 H 1.08998 * 109.88379 * 59.55951 * 11 10 8 34 34 H 1.08998 * 110.71700 * 96.16950 * 12 11 10 35 35 H 1.08991 * 110.72004 * 219.44241 * 12 11 10 36 36 H 1.09001 * 109.46965 * 173.66697 * 14 13 12 37 37 H 1.08997 * 109.47448 * 293.67183 * 14 13 12 38 38 H 1.09005 * 109.46962 * 53.67224 * 14 13 12 39 39 H 1.09004 * 109.46972 * 306.34484 * 15 13 12 40 40 H 1.08998 * 109.47042 * 66.34116 * 15 13 12 41 41 H 0.97000 * 119.99512 * 359.97438 * 16 15 13 42 42 H 0.96994 * 120.00400 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.36858 * 322.93289 * 25 10 8 44 44 H 1.08999 * 110.36307 * 85.25503 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3058 2.3064 -0.0005 5 6 1.8672 3.5024 -0.0010 6 6 3.2518 3.6012 -0.0016 7 6 4.0003 2.4245 -0.0010 8 6 5.4841 2.4751 -0.0010 9 8 6.0554 3.5472 -0.0019 10 7 6.1974 1.3315 -0.0010 11 6 5.6370 -0.0278 -0.0004 12 6 6.8247 -1.0129 -0.0269 13 6 7.9763 -0.1533 -0.6119 14 6 7.9063 -0.1080 -2.1397 15 6 9.3383 -0.6691 -0.1434 16 7 10.3883 0.2507 -0.5880 17 6 11.6983 -0.0070 -0.2839 18 1 11.9574 -0.8883 0.2842 19 6 12.6931 0.8644 -0.7056 20 7 12.3774 1.9380 -1.3984 21 14 14.4801 0.5131 -0.2901 22 1 15.0871 -0.3077 -1.3686 23 1 15.2208 1.7943 -0.1668 24 1 14.5532 -0.2266 0.9955 25 6 7.6685 1.2364 -0.0004 26 7 3.3640 1.2557 -0.0059 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2560 4.3929 -0.0019 31 1 3.7375 4.5659 -0.0016 32 1 5.0455 -0.1845 0.9016 33 1 5.0153 -0.1728 -0.8839 34 1 7.0686 -1.3500 0.9805 35 1 6.6080 -1.8608 -0.6766 36 1 8.6540 0.5895 -2.5171 37 1 8.1009 -1.1022 -2.5420 38 1 6.9139 0.2210 -2.4483 39 1 9.3480 -0.7328 0.9447 40 1 9.5178 -1.6574 -0.5668 41 1 10.1555 1.0420 -1.0986 42 1 13.0725 2.5471 -1.6928 43 1 8.1000 2.0257 -0.6160 44 1 8.0521 1.2961 1.0181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699840531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:46 Heat of formation + Delta-G solvation = -13.828098 kcal Electronic energy + Delta-G solvation = -27029.165641 eV Core-core repulsion = 23175.368557 eV Total energy + Delta-G solvation = -3853.797084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.56595 -41.24628 -39.62536 -38.98180 -36.55289 -35.25766 -34.19345 -32.63201 -32.22421 -30.37900 -28.71675 -28.15255 -27.54629 -26.20916 -25.09430 -24.56830 -23.36145 -21.49955 -20.23227 -19.54447 -19.35396 -18.86011 -17.75217 -17.63077 -17.22542 -16.87951 -16.60140 -16.43089 -15.71703 -15.67077 -15.46376 -15.27301 -14.92257 -14.89897 -14.75837 -14.39842 -13.96390 -13.59581 -13.41490 -13.05598 -12.98472 -12.89231 -12.82621 -12.66983 -12.36913 -12.32580 -12.14959 -12.07241 -12.03307 -11.73944 -11.64105 -11.50413 -11.37070 -10.92180 -10.37936 -10.23569 -9.75602 -8.96236 -7.92074 -5.20502 -0.71238 -0.11468 1.34116 1.48033 1.49934 1.52006 1.58270 1.72653 2.57709 2.63113 2.80476 3.09147 3.40385 3.43946 3.52032 3.60106 3.79748 3.85214 4.12261 4.16684 4.31520 4.37174 4.38016 4.40895 4.43111 4.54254 4.67541 4.74375 4.75060 4.79067 4.93660 4.96543 4.97331 5.07868 5.10902 5.13939 5.23968 5.29884 5.45375 5.46934 5.52814 5.99683 6.28495 6.29702 6.68994 6.87490 7.36197 8.12797 8.35085 9.31659 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.002711 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.508565 B =10324.862109 C =11082.851809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.302 6.302 3 C 0.486 3.514 4 N -0.554 5.554 5 C 0.207 3.793 6 C -0.206 4.206 7 C 0.159 3.841 8 C 0.571 3.429 9 O -0.560 6.560 10 N -0.591 5.591 11 C 0.125 3.875 12 C -0.113 4.113 13 C -0.071 4.071 14 C -0.121 4.121 15 C 0.169 3.831 16 N -0.744 5.744 17 C -0.240 4.240 18 H 0.079 0.921 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.299 1.299 24 H -0.268 1.268 25 C 0.125 3.875 26 N -0.513 5.513 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.230 0.770 31 H 0.173 0.827 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.026 0.974 40 H 0.035 0.965 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.051 0.949 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.427 -3.409 3.105 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.203 6.203 3 C 0.183 3.817 4 N -0.284 5.284 5 C 0.040 3.960 6 C -0.230 4.230 7 C 0.012 3.988 8 C 0.358 3.642 9 O -0.439 6.439 10 N -0.321 5.321 11 C 0.003 3.997 12 C -0.152 4.152 13 C -0.072 4.072 14 C -0.178 4.178 15 C 0.043 3.957 16 N -0.387 5.387 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.802 3.198 22 H -0.214 1.214 23 H -0.226 1.226 24 H -0.193 1.193 25 C 0.003 3.997 26 N -0.242 5.242 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.246 0.754 31 H 0.191 0.809 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -29.422 -4.161 3.193 29.886 hybrid contribution 1.601 1.395 -0.114 2.127 sum -27.821 -2.766 3.079 28.127 Atomic orbital electron populations 1.23302 0.73472 1.05567 1.03152 1.86109 1.25446 1.21982 1.86787 1.20827 0.85623 0.85817 0.89409 1.68132 1.41319 0.99648 1.19305 1.23849 0.91551 0.95294 0.85319 1.23044 0.96483 1.00494 1.02982 1.21124 0.93296 0.89440 0.94899 1.17825 0.85708 0.83016 0.77679 1.90811 1.71153 1.29593 1.52304 1.48479 1.07465 1.07074 1.69100 1.22202 0.95559 0.78481 1.03431 1.22831 0.91724 0.97577 1.03018 1.21841 0.95481 0.93625 0.96289 1.21580 1.00673 1.02257 0.93292 1.20760 0.85657 0.92883 0.96447 1.42600 1.02568 1.27539 1.65948 1.19650 0.84706 1.05699 1.27128 0.90347 1.25570 1.02182 0.97542 1.01761 1.69828 1.32933 1.15285 1.44218 0.85142 0.80218 0.76334 0.78078 1.21387 1.22581 1.19316 1.22203 0.78763 0.98245 1.00529 1.67609 1.08740 1.28988 1.18837 0.91451 0.91517 0.85196 0.75383 0.80927 0.90025 0.90085 0.89244 0.87298 0.94761 0.91027 0.92357 0.95635 0.94728 0.79415 0.94167 0.92991 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.36 113.37 1.17 1.57 16 2 O -0.30 -5.66 10.56 -87.69 -0.93 -6.59 16 3 C 0.49 10.30 8.48 180.61 1.53 11.84 16 4 N -0.55 -9.41 9.20 -313.44 -2.88 -12.29 16 5 C 0.21 2.63 11.30 84.79 0.96 3.59 16 6 C -0.21 -3.83 9.71 22.70 0.22 -3.61 16 7 C 0.16 4.05 6.75 41.98 0.28 4.33 16 8 C 0.57 18.54 7.86 86.97 0.68 19.23 16 9 O -0.56 -21.88 16.68 -3.64 -0.06 -21.94 16 10 N -0.59 -18.39 3.31 -814.47 -2.70 -21.09 16 11 C 0.12 3.05 5.03 86.73 0.44 3.49 16 12 C -0.11 -2.61 5.92 31.78 0.19 -2.42 16 13 C -0.07 -2.26 0.62 -50.79 -0.03 -2.30 16 14 C -0.12 -3.86 8.42 71.98 0.61 -3.25 16 15 C 0.17 6.55 5.23 86.38 0.45 7.00 16 16 N -0.74 -37.85 5.17 -343.45 -1.78 -39.63 16 17 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -61.15 13.06 21.65 0.28 -60.86 16 21 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.12 4.49 5.33 86.86 0.46 4.96 16 26 N -0.51 -12.49 7.09 -302.70 -2.15 -14.64 16 27 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 28 H 0.07 0.62 8.09 -2.38 -0.02 0.60 16 29 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.23 0.59 8.06 -2.91 -0.02 0.56 16 31 H 0.17 2.89 7.73 -2.91 -0.02 2.87 16 32 H 0.08 1.91 7.57 -2.39 -0.02 1.89 16 33 H 0.08 1.94 7.43 -2.39 -0.02 1.92 16 34 H 0.09 1.90 8.01 -2.39 -0.02 1.88 16 35 H 0.11 2.01 8.05 -2.39 -0.02 1.99 16 36 H 0.03 1.32 7.19 -2.39 -0.02 1.30 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.69 7.82 -2.38 -0.02 1.67 16 39 H 0.03 0.99 8.11 -2.38 -0.02 0.97 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.37 20.60 6.31 -92.71 -0.58 20.01 16 42 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.05 2.22 7.77 -2.39 -0.02 2.20 16 44 H 0.06 2.41 8.04 -2.39 -0.02 2.40 16 Total: -1.00 -75.76 365.27 0.52 -75.24 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.43 Total: 25.13 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 8.27 Total: 27.66 kcal Atomic # 7 Polarization: -139.29 SS G_CDS: -9.22 Total: -148.51 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.99 Total: -28.53 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -75.76 0.52 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699840531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.410 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds