Wall clock time and date at job start Tue Mar 31 2020 12:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48501 * 109.46970 * 269.99825 * 3 2 1 5 5 H 1.48500 * 109.47193 * 29.99867 * 3 2 1 6 6 H 1.48501 * 109.46986 * 149.99981 * 3 2 1 7 7 C 1.38818 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99568 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.47746 * 125.82366 * 346.80851 * 9 7 2 11 11 C 1.54910 * 104.84271 * 204.25024 * 10 9 7 12 12 C 1.55154 * 101.58182 * 322.90795 * 11 10 9 13 13 C 1.47022 * 125.64710 * 166.81345 * 9 7 2 14 14 H 1.08998 * 109.88485 * 59.32529 * 13 9 7 15 15 C 1.52999 * 109.88053 * 298.30985 * 13 9 7 16 16 C 1.53003 * 109.46917 * 176.68294 * 15 13 9 17 17 C 1.53002 * 109.46990 * 185.08513 * 16 15 13 18 18 N 1.46503 * 109.47336 * 179.97438 * 17 16 15 19 19 C 1.34777 * 120.00006 * 179.72460 * 18 17 16 20 20 O 1.21540 * 119.99996 * 0.02562 * 19 18 17 21 21 C 1.47932 * 119.99492 * 179.97438 * 19 18 17 22 22 C 1.39987 * 120.11375 * 179.97438 * 21 19 18 23 23 C 1.38416 * 117.96820 * 179.97438 * 22 21 19 24 24 C 1.39350 * 118.03757 * 0.02562 * 23 22 21 25 25 O 1.35514 * 120.02371 * 180.02562 * 24 23 22 26 26 N 1.32676 * 119.94314 * 359.97438 * 24 23 22 27 27 N 1.28354 * 122.19493 * 359.73605 * 26 24 23 28 28 H 0.96999 * 120.00186 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.43434 * 85.37300 * 10 9 7 30 30 H 1.08998 * 110.29312 * 323.05314 * 10 9 7 31 31 H 1.09003 * 111.00578 * 204.83299 * 11 10 9 32 32 H 1.09000 * 111.03864 * 80.99765 * 11 10 9 33 33 H 1.09003 * 110.71771 * 277.13696 * 12 11 10 34 34 H 1.09001 * 110.72284 * 153.86530 * 12 11 10 35 35 H 1.08995 * 109.47083 * 56.68139 * 15 13 9 36 36 H 1.08995 * 109.47190 * 296.67987 * 15 13 9 37 37 H 1.08997 * 109.47191 * 65.08448 * 16 15 13 38 38 H 1.09008 * 109.47064 * 305.08127 * 16 15 13 39 39 H 1.09010 * 109.46905 * 59.99727 * 17 16 15 40 40 H 1.09000 * 109.47034 * 300.00000 * 17 16 15 41 41 H 0.97001 * 119.99273 * 359.97438 * 18 17 16 42 42 H 1.08001 * 121.01134 * 0.02562 * 22 21 19 43 43 H 1.08004 * 120.97696 * 180.02562 * 23 22 21 44 44 H 0.96704 * 113.99971 * 89.99844 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1169 -2.5537 0.2734 11 6 -0.2627 -4.0159 0.7635 12 6 0.7707 -4.7491 -0.1319 13 6 1.9048 -3.7117 -0.2715 14 1 2.6941 -3.9262 0.4489 15 6 2.4725 -3.7494 -1.6917 16 6 3.1454 -5.1015 -1.9363 17 6 3.8226 -5.0935 -3.3083 18 7 4.4675 -6.3880 -3.5422 19 6 5.1256 -6.6142 -4.6964 20 8 5.1845 -5.7441 -5.5430 21 6 5.7772 -7.9211 -4.9323 22 6 6.4610 -8.1589 -6.1304 23 6 7.0547 -9.3971 -6.3043 24 6 6.9351 -10.3309 -5.2769 25 8 7.5012 -11.5556 -5.4044 26 7 6.2675 -10.0196 -4.1734 27 7 5.7203 -8.8707 -4.0064 28 1 -0.4850 0.8400 0.0004 29 1 -0.6965 -2.3991 -0.6367 30 1 -0.4368 -1.8595 1.0505 31 1 -1.2706 -4.3898 0.5834 32 1 0.0017 -4.1036 1.8173 33 1 0.3401 -4.9831 -1.1055 34 1 1.1330 -5.6529 0.3579 35 1 3.2056 -2.9517 -1.8112 36 1 1.6644 -3.6106 -2.4099 37 1 2.3951 -5.8916 -1.9060 38 1 3.8929 -5.2805 -1.1633 39 1 4.5729 -4.3033 -3.3385 40 1 3.0752 -4.9145 -4.0812 41 1 4.4176 -7.0835 -2.8679 42 1 6.5240 -7.3991 -6.8954 43 1 7.5947 -9.6325 -7.2095 44 1 8.4097 -11.6050 -5.0767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753022167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:04 Heat of formation + Delta-G solvation = -0.059666 kcal Electronic energy + Delta-G solvation = -25696.535658 eV Core-core repulsion = 21843.335618 eV Total energy + Delta-G solvation = -3853.200040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80423 -39.75734 -38.14666 -37.79596 -35.68330 -33.77856 -33.14357 -32.38624 -31.73815 -29.37432 -28.15460 -25.94983 -25.14844 -24.62394 -23.80345 -21.56151 -21.35830 -20.10205 -19.76924 -19.16763 -18.57239 -18.07484 -16.77260 -16.68182 -16.00099 -15.87358 -15.14849 -15.12192 -14.90420 -14.57591 -14.25141 -14.02342 -13.84414 -13.67411 -12.92049 -12.87230 -12.43047 -12.30916 -12.02691 -11.88838 -11.69900 -11.44616 -11.00918 -10.94949 -10.81619 -10.74632 -10.54087 -10.41318 -10.31059 -10.13288 -10.05215 -9.95283 -9.73279 -9.57662 -9.56895 -9.23519 -8.54699 -6.73713 -5.69753 -3.04373 -0.20023 0.12475 2.14249 2.61836 2.81270 3.12379 3.41890 3.47268 3.48663 3.49444 3.97711 4.10894 4.32983 4.36953 4.52408 4.95867 5.02075 5.18070 5.19495 5.34946 5.39858 5.48106 5.62882 5.64521 5.74851 5.88153 5.95099 6.02133 6.13409 6.25365 6.34389 6.39210 6.46224 6.61004 6.64216 6.73908 6.76950 6.98821 7.18950 7.22998 7.60091 7.66720 7.81076 7.85021 7.95416 8.33744 9.24679 9.86670 10.56245 11.42424 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.002126 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.519716 B =13169.422361 C =14078.758508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.125 4.125 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.116 3.884 18 N -0.703 5.703 19 C 0.573 3.427 20 O -0.527 6.527 21 C 0.017 3.983 22 C -0.047 4.047 23 C -0.140 4.140 24 C 0.273 3.727 25 O -0.472 6.472 26 N -0.255 5.255 27 N -0.182 5.182 28 H 0.252 0.748 29 H 0.022 0.978 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.412 0.588 42 H 0.169 0.831 43 H 0.164 0.836 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.449 -20.976 -10.555 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.189 4.189 12 C -0.163 4.163 13 C 0.054 3.946 14 H 0.049 0.951 15 C -0.162 4.162 16 C -0.167 4.167 17 C -0.007 4.007 18 N -0.353 5.353 19 C 0.355 3.645 20 O -0.402 6.402 21 C -0.130 4.130 22 C -0.076 4.076 23 C -0.170 4.170 24 C 0.089 3.911 25 O -0.278 6.278 26 N -0.108 5.108 27 N -0.031 5.031 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.248 0.752 42 H 0.187 0.813 43 H 0.182 0.818 44 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 12.412 -20.752 -9.932 26.141 hybrid contribution 1.435 0.935 -1.073 2.021 sum 13.847 -19.817 -11.005 26.562 Atomic orbital electron populations 1.69934 1.04953 1.25025 1.56690 1.24878 0.95665 0.97718 1.02126 0.86173 0.78678 0.83666 0.77586 1.21578 1.21758 1.20695 1.18966 0.90313 0.82358 1.43609 0.90776 1.44618 1.05339 1.00995 1.81146 1.21484 0.85004 0.90234 0.98620 1.23009 0.97416 0.99745 0.98734 1.22595 0.97096 0.97141 0.99421 1.20922 0.93854 0.86945 0.92849 0.95122 1.22027 1.00045 0.94186 0.99903 1.21859 0.99870 1.00350 0.94638 1.21661 0.97013 0.83473 0.98553 1.45997 1.52973 1.17941 1.18419 1.17430 0.79223 0.84985 0.82906 1.90842 1.60588 1.44303 1.44510 1.23001 0.99512 0.96747 0.93715 1.22459 0.90973 0.97162 0.97042 1.22606 1.00534 0.92497 1.01328 1.21058 0.93468 0.85742 0.90870 1.84741 1.33789 1.25460 1.83853 1.73103 1.07377 1.10497 1.19840 1.73275 1.10475 0.95044 1.24343 0.93777 0.95948 0.91022 0.92582 0.92493 0.92041 0.92568 0.91665 0.92157 0.91453 0.91496 0.90851 0.90925 0.75241 0.81348 0.81802 0.72993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 10.54 55.49 0.59 -26.43 16 2 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.15 9.75 -15.06 -0.15 -6.30 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.95 3.14 -162.32 -0.51 -15.46 16 10 C 0.17 4.16 5.46 -2.35 -0.01 4.15 16 11 C -0.15 -2.84 7.08 -24.58 -0.17 -3.02 16 12 C -0.12 -2.12 5.61 -24.90 -0.14 -2.26 16 13 C 0.16 3.21 3.18 -66.95 -0.21 3.00 16 14 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 15 C -0.12 -2.11 4.69 -26.73 -0.13 -2.24 16 16 C -0.13 -1.66 5.07 -26.73 -0.14 -1.79 16 17 C 0.12 1.46 5.67 -4.04 -0.02 1.43 16 18 N -0.70 -7.95 5.55 -61.22 -0.34 -8.29 16 19 C 0.57 6.96 7.81 -12.29 -0.10 6.86 16 20 O -0.53 -7.83 16.39 5.33 0.09 -7.74 16 21 C 0.02 0.18 6.83 -82.85 -0.57 -0.39 16 22 C -0.05 -0.35 9.72 -38.86 -0.38 -0.73 16 23 C -0.14 -0.78 10.14 -39.10 -0.40 -1.17 16 24 C 0.27 2.03 7.85 -16.77 -0.13 1.90 16 25 O -0.47 -2.53 13.56 -18.24 -0.25 -2.78 16 26 N -0.25 -2.63 11.54 30.54 0.35 -2.28 16 27 N -0.18 -1.95 10.73 33.32 0.36 -1.60 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.07 1.94 6.83 -51.93 -0.35 1.59 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.24 7.89 -51.93 -0.41 0.83 16 36 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.07 0.80 7.57 -51.93 -0.39 0.41 16 38 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.41 4.04 7.82 -40.82 -0.32 3.72 16 42 H 0.17 1.02 7.71 -52.49 -0.40 0.61 16 43 H 0.16 0.36 8.06 -52.48 -0.42 -0.06 16 44 H 0.41 0.02 9.06 45.56 0.41 0.43 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -34.32 368.70 -7.46 -41.78 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.64 Total: 0.99 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.63 Total: -0.87 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.45 Total: -54.05 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.16 Total: -10.52 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.32 -7.46 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753022167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.715 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds