Wall clock time and date at job start Tue Mar 31 2020 12:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48501 * 109.46970 * 269.99825 * 3 2 1 5 5 H 1.48500 * 109.47193 * 29.99867 * 3 2 1 6 6 H 1.48501 * 109.46986 * 149.99981 * 3 2 1 7 7 C 1.38818 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99568 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.47746 * 125.82366 * 346.80851 * 9 7 2 11 11 C 1.54910 * 104.84271 * 204.25024 * 10 9 7 12 12 C 1.55154 * 101.58182 * 322.90795 * 11 10 9 13 13 C 1.47022 * 125.64710 * 166.81345 * 9 7 2 14 14 H 1.08998 * 109.88485 * 59.32529 * 13 9 7 15 15 C 1.52999 * 109.88053 * 298.30985 * 13 9 7 16 16 C 1.53003 * 109.46917 * 176.68294 * 15 13 9 17 17 C 1.53002 * 109.46990 * 185.08513 * 16 15 13 18 18 N 1.46503 * 109.47336 * 179.97438 * 17 16 15 19 19 C 1.34777 * 120.00006 * 179.72460 * 18 17 16 20 20 O 1.21540 * 119.99996 * 0.02562 * 19 18 17 21 21 C 1.47932 * 119.99492 * 179.97438 * 19 18 17 22 22 C 1.39987 * 120.11375 * 179.97438 * 21 19 18 23 23 C 1.38416 * 117.96820 * 179.97438 * 22 21 19 24 24 C 1.39350 * 118.03757 * 0.02562 * 23 22 21 25 25 O 1.35514 * 120.02371 * 180.02562 * 24 23 22 26 26 N 1.32676 * 119.94314 * 359.97438 * 24 23 22 27 27 N 1.28354 * 122.19493 * 359.73605 * 26 24 23 28 28 H 0.96999 * 120.00186 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.43434 * 85.37300 * 10 9 7 30 30 H 1.08998 * 110.29312 * 323.05314 * 10 9 7 31 31 H 1.09003 * 111.00578 * 204.83299 * 11 10 9 32 32 H 1.09000 * 111.03864 * 80.99765 * 11 10 9 33 33 H 1.09003 * 110.71771 * 277.13696 * 12 11 10 34 34 H 1.09001 * 110.72284 * 153.86530 * 12 11 10 35 35 H 1.08995 * 109.47083 * 56.68139 * 15 13 9 36 36 H 1.08995 * 109.47190 * 296.67987 * 15 13 9 37 37 H 1.08997 * 109.47191 * 65.08448 * 16 15 13 38 38 H 1.09008 * 109.47064 * 305.08127 * 16 15 13 39 39 H 1.09010 * 109.46905 * 59.99727 * 17 16 15 40 40 H 1.09000 * 109.47034 * 300.00000 * 17 16 15 41 41 H 0.97001 * 119.99273 * 359.97438 * 18 17 16 42 42 H 1.08001 * 121.01134 * 0.02562 * 22 21 19 43 43 H 1.08004 * 120.97696 * 180.02562 * 23 22 21 44 44 H 0.96704 * 113.99971 * 89.99844 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1169 -2.5537 0.2734 11 6 -0.2627 -4.0159 0.7635 12 6 0.7707 -4.7491 -0.1319 13 6 1.9048 -3.7117 -0.2715 14 1 2.6941 -3.9262 0.4489 15 6 2.4725 -3.7494 -1.6917 16 6 3.1454 -5.1015 -1.9363 17 6 3.8226 -5.0935 -3.3083 18 7 4.4675 -6.3880 -3.5422 19 6 5.1256 -6.6142 -4.6964 20 8 5.1845 -5.7441 -5.5430 21 6 5.7772 -7.9211 -4.9323 22 6 6.4610 -8.1589 -6.1304 23 6 7.0547 -9.3971 -6.3043 24 6 6.9351 -10.3309 -5.2769 25 8 7.5012 -11.5556 -5.4044 26 7 6.2675 -10.0196 -4.1734 27 7 5.7203 -8.8707 -4.0064 28 1 -0.4850 0.8400 0.0004 29 1 -0.6965 -2.3991 -0.6367 30 1 -0.4368 -1.8595 1.0505 31 1 -1.2706 -4.3898 0.5834 32 1 0.0017 -4.1036 1.8173 33 1 0.3401 -4.9831 -1.1055 34 1 1.1330 -5.6529 0.3579 35 1 3.2056 -2.9517 -1.8112 36 1 1.6644 -3.6106 -2.4099 37 1 2.3951 -5.8916 -1.9060 38 1 3.8929 -5.2805 -1.1633 39 1 4.5729 -4.3033 -3.3385 40 1 3.0752 -4.9145 -4.0812 41 1 4.4176 -7.0835 -2.8679 42 1 6.5240 -7.3991 -6.8954 43 1 7.5947 -9.6325 -7.2095 44 1 8.4097 -11.6050 -5.0767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753022167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:03 Heat of formation + Delta-G solvation = -28.083161 kcal Electronic energy + Delta-G solvation = -25697.750848 eV Core-core repulsion = 21843.335618 eV Total energy + Delta-G solvation = -3854.415230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43993 -40.65747 -39.44250 -38.62108 -36.81156 -34.72613 -34.36090 -33.83628 -32.61681 -31.22315 -29.53240 -26.91534 -26.45977 -25.78861 -25.02419 -22.76298 -22.26174 -21.84514 -20.75825 -20.23909 -19.38794 -18.80173 -18.58717 -17.32504 -17.04668 -16.91665 -16.77188 -16.11703 -15.88881 -15.78665 -15.53990 -15.27908 -14.77567 -14.53150 -14.28256 -13.88833 -13.68295 -13.56787 -13.42583 -13.12646 -13.04557 -12.96358 -12.73392 -12.66964 -12.24675 -11.98589 -11.83195 -11.68487 -11.53541 -11.49756 -11.35925 -11.27211 -11.10982 -10.95475 -10.71890 -10.64512 -10.21674 -8.76663 -7.82933 -5.18256 -0.81529 -0.42153 1.39099 1.45381 1.46973 1.55200 1.81922 2.20839 2.42377 2.51385 2.83776 3.34880 3.40386 3.62422 3.70025 3.72768 3.86922 3.95286 4.02446 4.17518 4.27082 4.36681 4.44408 4.46283 4.64210 4.71693 4.79483 4.83530 4.85938 4.89042 4.99881 5.05634 5.14409 5.24013 5.28361 5.37301 5.52757 5.53999 5.69987 5.72740 5.81585 6.28843 6.30820 6.43893 6.93134 7.14327 7.30691 7.84236 8.52041 9.28441 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.002126 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.519716 B =13169.422361 C =14078.758508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.619 5.619 10 C 0.173 3.827 11 C -0.138 4.138 12 C -0.112 4.112 13 C 0.151 3.849 14 H 0.035 0.965 15 C -0.111 4.111 16 C -0.111 4.111 17 C 0.122 3.878 18 N -0.696 5.696 19 C 0.573 3.427 20 O -0.561 6.561 21 C 0.001 3.999 22 C -0.049 4.049 23 C -0.118 4.118 24 C 0.279 3.721 25 O -0.476 6.476 26 N -0.288 5.288 27 N -0.197 5.197 28 H 0.245 0.755 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.420 0.580 42 H 0.181 0.819 43 H 0.205 0.795 44 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.299 -23.799 -11.308 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.176 4.176 12 C -0.150 4.150 13 C 0.045 3.955 14 H 0.052 0.948 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.001 4.001 18 N -0.346 5.346 19 C 0.357 3.643 20 O -0.438 6.438 21 C -0.146 4.146 22 C -0.078 4.078 23 C -0.147 4.147 24 C 0.094 3.906 25 O -0.286 6.286 26 N -0.142 5.142 27 N -0.047 5.047 28 H 0.054 0.946 29 H 0.009 0.991 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.258 0.742 42 H 0.198 0.802 43 H 0.222 0.778 44 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 14.311 -23.642 -10.661 29.621 hybrid contribution 0.946 1.684 -0.864 2.115 sum 15.257 -21.958 -11.525 29.116 Atomic orbital electron populations 1.70151 1.06300 1.25075 1.58451 1.25667 0.96521 1.00956 1.03001 0.85176 0.77804 0.79639 0.77354 1.21543 1.22221 1.19369 1.19306 0.90716 0.83705 1.42018 0.90515 1.44928 1.05746 1.02267 1.81438 1.21286 0.84563 0.93214 0.96138 1.22882 0.99635 0.95815 0.99284 1.22592 0.95138 0.97273 0.99970 1.21217 0.95042 0.85347 0.93931 0.94755 1.21803 0.99075 0.96224 0.97979 1.21659 1.00359 0.97898 0.95023 1.21434 0.96523 0.83946 0.98180 1.45870 1.52582 1.17541 1.18645 1.17717 0.78732 0.85486 0.82402 1.90818 1.61896 1.45608 1.45513 1.22777 1.00900 0.95804 0.95129 1.22659 0.90491 0.98336 0.96289 1.22945 0.99110 0.90846 1.01845 1.21224 0.92541 0.86408 0.90432 1.84704 1.35586 1.24382 1.83932 1.72996 1.08888 1.10518 1.21772 1.73187 1.11206 0.95367 1.24912 0.94568 0.99074 0.94932 0.90140 0.91868 0.90990 0.88685 0.94101 0.93787 0.89372 0.90114 0.92071 0.91819 0.74186 0.80165 0.77824 0.70260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.28 10.54 21.65 0.23 -58.06 16 2 C -0.07 -3.97 5.47 84.86 0.46 -3.51 16 3 Si 0.97 46.70 29.55 68.60 2.03 48.72 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.23 -12.81 9.75 84.04 0.82 -11.99 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.62 -31.56 3.14 -667.45 -2.09 -33.65 16 10 C 0.17 8.64 5.46 86.79 0.47 9.11 16 11 C -0.14 -4.98 7.08 31.99 0.23 -4.76 16 12 C -0.11 -3.49 5.61 31.78 0.18 -3.31 16 13 C 0.15 5.81 3.18 45.34 0.14 5.96 16 14 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 15 C -0.11 -3.81 4.69 30.60 0.14 -3.66 16 16 C -0.11 -2.65 5.07 30.60 0.16 -2.49 16 17 C 0.12 3.01 5.67 86.38 0.49 3.50 16 18 N -0.70 -15.08 5.55 -465.87 -2.58 -17.67 16 19 C 0.57 13.64 7.81 86.81 0.68 14.32 16 20 O -0.56 -16.64 16.39 -3.84 -0.06 -16.70 16 21 C 0.00 0.03 6.83 42.00 0.29 0.31 16 22 C -0.05 -0.63 9.72 22.74 0.22 -0.41 16 23 C -0.12 -0.93 10.14 22.58 0.23 -0.70 16 24 C 0.28 3.44 7.85 84.83 0.67 4.10 16 25 O -0.48 -3.68 13.56 -88.16 -1.20 -4.88 16 26 N -0.29 -5.53 11.54 -170.02 -1.96 -7.49 16 27 N -0.20 -4.03 10.73 -48.50 -0.52 -4.56 16 28 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 29 H -0.01 -0.48 8.10 -2.39 -0.02 -0.50 16 30 H 0.03 1.84 6.83 -2.39 -0.02 1.83 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.12 7.79 -2.39 -0.02 2.10 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.58 7.89 -2.39 -0.02 1.56 16 36 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 37 H 0.09 1.79 7.57 -2.39 -0.02 1.78 16 38 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.42 7.62 7.82 -92.71 -0.73 6.89 16 42 H 0.18 1.83 7.71 -2.91 -0.02 1.80 16 43 H 0.20 -0.09 8.06 -2.91 -0.02 -0.11 16 44 H 0.43 -1.33 9.06 -74.05 -0.67 -2.00 16 Total: -1.00 -78.24 368.70 -1.35 -79.59 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -0.36 Total: 8.21 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.18 Total: 6.47 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -6.93 Total: -121.42 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.26 Total: -21.58 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -78.24 -1.35 -79.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753022167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.507 kcal (2) G-P(sol) polarization free energy of solvation -78.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds