Wall clock time and date at job start Tue Mar 31 2020 13:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32214 * 120.50704 * 2 1 4 4 C 1.31908 * 121.14292 * 180.27099 * 3 2 1 5 5 N 1.31760 * 122.19199 * 359.72428 * 4 3 2 6 6 C 1.32741 * 120.87216 * 359.97438 * 5 4 3 7 7 O 1.35288 * 120.61421 * 180.02562 * 6 5 4 8 8 C 1.39768 * 120.50739 * 179.73936 * 2 1 3 9 9 C 1.47531 * 120.98610 * 0.02562 * 8 2 1 10 10 O 1.21588 * 119.99641 * 269.72053 * 9 8 2 11 11 N 1.34770 * 120.00039 * 89.71530 * 9 8 2 12 12 C 1.46504 * 120.00106 * 185.07198 * 11 9 8 13 13 C 1.53002 * 109.46729 * 298.55399 * 12 11 9 14 14 C 1.53000 * 109.47137 * 58.54910 * 12 11 9 15 15 N 1.46498 * 109.47019 * 60.00416 * 14 12 11 16 16 C 1.36938 * 120.00196 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99475 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99910 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00268 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99692 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47083 * 60.00020 * 20 18 16 22 22 H 1.48505 * 109.47147 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47260 * 300.00028 * 20 18 16 24 24 C 1.53001 * 109.47424 * 178.55483 * 12 11 9 25 25 C 1.52993 * 117.49871 * 131.99962 * 24 12 11 26 26 C 1.53001 * 60.00230 * 252.51033 * 25 24 12 27 27 H 1.09003 * 109.47302 * 270.25875 * 1 2 3 28 28 H 1.08998 * 109.47649 * 30.25931 * 1 2 3 29 29 H 1.08998 * 109.46874 * 150.26755 * 1 2 3 30 30 H 1.08000 * 118.90532 * 179.74807 * 4 3 2 31 31 H 0.96695 * 113.99570 * 269.98307 * 7 6 5 32 32 H 0.97000 * 120.00117 * 5.06902 * 11 9 8 33 33 H 1.08999 * 109.47385 * 180.02562 * 13 12 11 34 34 H 1.09002 * 109.46855 * 299.99887 * 13 12 11 35 35 H 1.08999 * 109.47524 * 59.99805 * 13 12 11 36 36 H 1.08997 * 109.46632 * 179.97438 * 14 12 11 37 37 H 1.08999 * 109.47154 * 300.00218 * 14 12 11 38 38 H 0.97009 * 119.99795 * 0.02562 * 15 14 12 39 39 H 0.97003 * 119.99797 * 180.02562 * 19 18 16 40 40 H 1.09001 * 115.54766 * 277.71030 * 24 12 11 41 41 H 1.08996 * 117.50163 * 0.02562 * 25 24 12 42 42 H 1.09011 * 117.49727 * 145.02315 * 25 24 12 43 43 H 1.09000 * 117.49945 * 252.51295 * 26 25 24 44 44 H 1.08996 * 117.49389 * 107.48959 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1538 -0.0053 5 7 4.2115 0.0466 -0.0055 6 6 3.6233 -1.1434 0.0002 7 8 4.3619 -2.2769 0.0005 8 6 2.2165 -1.2042 0.0055 9 6 1.5124 -2.5006 0.0108 10 8 1.2264 -3.0327 1.0660 11 7 1.1862 -3.0950 -1.1539 12 6 0.3904 -4.3251 -1.1508 13 6 1.1530 -5.4239 -0.4077 14 6 -0.9446 -4.0672 -0.4494 15 7 -1.6748 -3.0151 -1.1608 16 6 -2.9048 -2.6128 -0.7134 17 1 -3.3365 -3.0708 0.1643 18 6 -3.5964 -1.6156 -1.3872 19 7 -3.0701 -1.0571 -2.4565 20 14 -5.2741 -1.0663 -0.7764 21 1 -5.1501 -0.5441 0.6082 22 1 -5.7985 0.0026 -1.6640 23 1 -6.2077 -2.2211 -0.7882 24 6 0.1320 -4.7691 -2.5920 25 6 0.3905 -6.2372 -2.9361 26 6 1.3453 -5.1536 -3.4411 27 1 -0.3634 0.0046 1.0277 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8924 -0.5097 30 1 4.0086 2.1049 -0.0093 31 1 4.5728 -2.6091 -0.8828 32 1 1.4782 -2.7084 -1.9942 33 1 0.5613 -6.3393 -0.4058 34 1 2.1042 -5.6076 -0.9074 35 1 1.3372 -5.1077 0.6190 36 1 -1.5367 -4.9823 -0.4475 37 1 -0.7604 -3.7510 0.5774 38 1 -1.2872 -2.6040 -1.9494 39 1 -3.5533 -0.3599 -2.9272 40 1 -0.6974 -4.2723 -3.0954 41 1 0.7442 -6.8870 -2.1357 42 1 -0.2692 -6.7068 -3.6660 43 1 1.3139 -4.9102 -4.5031 44 1 2.3276 -5.0905 -2.9730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753524008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:17 Heat of formation + Delta-G solvation = 19.934450 kcal Electronic energy + Delta-G solvation = -28577.378259 eV Core-core repulsion = 24725.045229 eV Total energy + Delta-G solvation = -3852.333030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.41568 -39.93872 -37.93133 -37.70563 -34.73758 -34.14408 -33.53230 -32.15817 -31.01197 -29.65861 -28.36512 -25.96907 -25.19134 -23.61512 -22.76684 -22.43582 -22.12548 -20.69883 -19.00788 -18.89792 -18.05022 -17.74373 -17.20859 -16.39664 -15.81378 -15.40840 -15.03586 -14.65863 -14.50442 -14.25681 -14.13331 -13.73118 -13.20237 -13.13359 -12.77858 -12.57674 -12.49657 -12.36331 -12.19142 -11.98753 -11.69910 -11.47828 -11.29341 -11.09295 -10.87981 -10.83528 -10.78873 -10.32654 -10.26555 -10.15500 -9.90504 -9.71116 -9.61101 -9.43677 -9.29029 -8.84193 -8.71936 -6.90773 -5.78799 -3.05649 0.56221 0.87802 2.70643 3.08575 3.26731 3.43460 3.48411 3.49670 3.54843 3.98699 4.03833 4.23400 4.58246 4.66522 4.77133 4.95577 5.03444 5.12413 5.13048 5.29419 5.40727 5.42350 5.57144 5.64327 5.72115 5.91942 5.99580 6.00966 6.05365 6.10390 6.14565 6.18507 6.20906 6.41023 6.47171 6.63351 6.72262 6.81066 6.82970 7.01059 7.13790 7.70668 7.73884 7.94208 8.40160 8.41479 9.52355 10.07696 10.44548 11.43438 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.005977 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.162854 B = 4683.167861 C = 6685.685725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.241 3.759 3 N -0.526 5.526 4 C 0.329 3.671 5 N -0.549 5.549 6 C 0.389 3.611 7 O -0.468 6.468 8 C -0.249 4.249 9 C 0.588 3.412 10 O -0.515 6.515 11 N -0.702 5.702 12 C 0.202 3.798 13 C -0.164 4.164 14 C 0.141 3.859 15 N -0.725 5.725 16 C -0.233 4.233 17 H 0.068 0.932 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.288 1.288 24 C -0.150 4.150 25 C -0.171 4.171 26 C -0.184 4.184 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.203 0.797 31 H 0.407 0.593 32 H 0.396 0.604 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.382 0.618 39 H 0.254 0.746 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.133 -3.407 -1.697 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.096 3.904 3 N -0.242 5.242 4 C 0.042 3.958 5 N -0.274 5.274 6 C 0.202 3.798 7 O -0.275 6.275 8 C -0.258 4.258 9 C 0.371 3.629 10 O -0.390 6.390 11 N -0.352 5.352 12 C 0.117 3.883 13 C -0.222 4.222 14 C 0.013 3.987 15 N -0.370 5.370 16 C -0.364 4.364 17 H 0.086 0.914 18 C -0.206 4.206 19 N -0.582 5.582 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.215 1.215 24 C -0.169 4.169 25 C -0.208 4.208 26 C -0.221 4.221 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.220 0.780 31 H 0.266 0.734 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.216 0.784 39 H 0.064 0.936 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.188 -2.960 -0.235 14.496 hybrid contribution -0.962 -0.074 -0.880 1.306 sum 13.227 -3.034 -1.115 13.616 Atomic orbital electron populations 1.21111 0.84958 1.07107 1.04566 1.22197 0.98524 0.85546 0.84153 1.68373 1.09858 1.29781 1.16177 1.24944 0.86554 0.95933 0.88402 1.67999 1.42682 0.98669 1.18083 1.19354 0.85544 0.85832 0.89106 1.84696 1.72713 1.36149 1.33972 1.21846 0.94771 0.97373 1.11805 1.17322 0.78241 0.82870 0.84417 1.90760 1.53231 1.63814 1.31150 1.45939 1.54542 1.26985 1.07782 1.20098 0.91652 0.83166 0.93391 1.22304 0.99457 0.97974 1.02490 1.21083 0.88675 0.92878 0.96033 1.42257 1.19213 1.42617 1.32880 1.19156 0.93893 1.14943 1.08417 0.91423 1.24622 0.98568 0.99498 0.97924 1.69619 1.38658 1.29611 1.20358 0.86354 0.84563 0.77991 0.77813 1.21347 1.21802 1.21455 1.22576 1.00569 0.98714 0.95016 1.23050 1.02845 0.91480 1.03463 1.22941 0.94791 1.04630 0.99741 0.89208 0.89260 0.86679 0.78046 0.73354 0.76977 0.91527 0.92908 0.90150 0.95508 0.93635 0.78420 0.93590 0.85862 0.88192 0.88853 0.88922 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.85 36.01 0.35 -1.81 16 2 C 0.24 3.93 6.86 -81.86 -0.56 3.37 16 3 N -0.53 -7.86 10.36 -10.52 -0.11 -7.97 16 4 C 0.33 4.13 12.27 -92.09 -1.13 3.00 16 5 N -0.55 -7.47 10.45 -14.31 -0.15 -7.61 16 6 C 0.39 5.48 7.85 -16.19 -0.13 5.35 16 7 O -0.47 -5.62 13.10 -17.56 -0.23 -5.85 16 8 C -0.25 -3.89 5.67 -104.56 -0.59 -4.48 16 9 C 0.59 9.80 4.92 -12.47 -0.06 9.73 16 10 O -0.51 -10.28 13.34 5.29 0.07 -10.21 16 11 N -0.70 -10.17 4.72 -48.64 -0.23 -10.40 16 12 C 0.20 3.06 0.54 -131.82 -0.07 2.99 16 13 C -0.16 -2.24 7.05 37.16 0.26 -1.98 16 14 C 0.14 2.79 4.95 -4.04 -0.02 2.77 16 15 N -0.72 -16.57 4.31 -59.91 -0.26 -16.83 16 16 C -0.23 -6.11 9.99 -15.06 -0.15 -6.26 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -25.91 13.06 55.49 0.72 -25.19 16 20 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.15 -2.07 4.86 -90.62 -0.44 -2.51 16 25 C -0.17 -1.96 9.62 -26.73 -0.26 -2.21 16 26 C -0.18 -1.96 9.72 -26.73 -0.26 -2.22 16 27 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.11 2.35 6.44 -51.93 -0.33 2.01 16 30 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.41 2.68 9.06 45.56 0.41 3.10 16 32 H 0.40 5.04 8.37 -40.82 -0.34 4.70 16 33 H 0.07 0.84 6.81 -51.93 -0.35 0.49 16 34 H 0.05 0.62 7.00 -51.93 -0.36 0.26 16 35 H 0.08 1.28 6.10 -51.93 -0.32 0.97 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 1.01 6.24 -51.93 -0.32 0.69 16 38 H 0.38 8.95 6.63 -40.82 -0.27 8.68 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.12 2.07 7.09 -51.93 -0.37 1.71 16 41 H 0.10 1.06 5.87 -51.93 -0.31 0.76 16 42 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.87 7.39 -51.93 -0.38 0.49 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -31.64 361.79 -7.94 -39.58 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.15 Total: 5.36 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -0.02 Total: -68.00 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.16 Total: -16.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.64 -7.94 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.515 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds