Wall clock time and date at job start Tue Mar 31 2020 13:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32214 * 120.50704 * 2 1 4 4 C 1.31908 * 121.14292 * 180.27099 * 3 2 1 5 5 N 1.31760 * 122.19199 * 359.72428 * 4 3 2 6 6 C 1.32741 * 120.87216 * 359.97438 * 5 4 3 7 7 O 1.35288 * 120.61421 * 180.02562 * 6 5 4 8 8 C 1.39768 * 120.50739 * 179.73936 * 2 1 3 9 9 C 1.47531 * 120.98610 * 0.02562 * 8 2 1 10 10 O 1.21588 * 119.99641 * 269.72053 * 9 8 2 11 11 N 1.34770 * 120.00039 * 89.71530 * 9 8 2 12 12 C 1.46504 * 120.00106 * 185.07198 * 11 9 8 13 13 C 1.53002 * 109.46729 * 298.55399 * 12 11 9 14 14 C 1.53000 * 109.47137 * 58.54910 * 12 11 9 15 15 N 1.46498 * 109.47019 * 60.00416 * 14 12 11 16 16 C 1.36938 * 120.00196 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99475 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99910 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00268 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99692 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47083 * 60.00020 * 20 18 16 22 22 H 1.48505 * 109.47147 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47260 * 300.00028 * 20 18 16 24 24 C 1.53001 * 109.47424 * 178.55483 * 12 11 9 25 25 C 1.52993 * 117.49871 * 131.99962 * 24 12 11 26 26 C 1.53001 * 60.00230 * 252.51033 * 25 24 12 27 27 H 1.09003 * 109.47302 * 270.25875 * 1 2 3 28 28 H 1.08998 * 109.47649 * 30.25931 * 1 2 3 29 29 H 1.08998 * 109.46874 * 150.26755 * 1 2 3 30 30 H 1.08000 * 118.90532 * 179.74807 * 4 3 2 31 31 H 0.96695 * 113.99570 * 269.98307 * 7 6 5 32 32 H 0.97000 * 120.00117 * 5.06902 * 11 9 8 33 33 H 1.08999 * 109.47385 * 180.02562 * 13 12 11 34 34 H 1.09002 * 109.46855 * 299.99887 * 13 12 11 35 35 H 1.08999 * 109.47524 * 59.99805 * 13 12 11 36 36 H 1.08997 * 109.46632 * 179.97438 * 14 12 11 37 37 H 1.08999 * 109.47154 * 300.00218 * 14 12 11 38 38 H 0.97009 * 119.99795 * 0.02562 * 15 14 12 39 39 H 0.97003 * 119.99797 * 180.02562 * 19 18 16 40 40 H 1.09001 * 115.54766 * 277.71030 * 24 12 11 41 41 H 1.08996 * 117.50163 * 0.02562 * 25 24 12 42 42 H 1.09011 * 117.49727 * 145.02315 * 25 24 12 43 43 H 1.09000 * 117.49945 * 252.51295 * 26 25 24 44 44 H 1.08996 * 117.49389 * 107.48959 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1538 -0.0053 5 7 4.2115 0.0466 -0.0055 6 6 3.6233 -1.1434 0.0002 7 8 4.3619 -2.2769 0.0005 8 6 2.2165 -1.2042 0.0055 9 6 1.5124 -2.5006 0.0108 10 8 1.2264 -3.0327 1.0660 11 7 1.1862 -3.0950 -1.1539 12 6 0.3904 -4.3251 -1.1508 13 6 1.1530 -5.4239 -0.4077 14 6 -0.9446 -4.0672 -0.4494 15 7 -1.6748 -3.0151 -1.1608 16 6 -2.9048 -2.6128 -0.7134 17 1 -3.3365 -3.0708 0.1643 18 6 -3.5964 -1.6156 -1.3872 19 7 -3.0701 -1.0571 -2.4565 20 14 -5.2741 -1.0663 -0.7764 21 1 -5.1501 -0.5441 0.6082 22 1 -5.7985 0.0026 -1.6640 23 1 -6.2077 -2.2211 -0.7882 24 6 0.1320 -4.7691 -2.5920 25 6 0.3905 -6.2372 -2.9361 26 6 1.3453 -5.1536 -3.4411 27 1 -0.3634 0.0046 1.0277 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8924 -0.5097 30 1 4.0086 2.1049 -0.0093 31 1 4.5728 -2.6091 -0.8828 32 1 1.4782 -2.7084 -1.9942 33 1 0.5613 -6.3393 -0.4058 34 1 2.1042 -5.6076 -0.9074 35 1 1.3372 -5.1077 0.6190 36 1 -1.5367 -4.9823 -0.4475 37 1 -0.7604 -3.7510 0.5774 38 1 -1.2872 -2.6040 -1.9494 39 1 -3.5533 -0.3599 -2.9272 40 1 -0.6974 -4.2723 -3.0954 41 1 0.7442 -6.8870 -2.1357 42 1 -0.2692 -6.7068 -3.6660 43 1 1.3139 -4.9102 -4.5031 44 1 2.3276 -5.0905 -2.9730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753524008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:17 Heat of formation + Delta-G solvation = -4.788336 kcal Electronic energy + Delta-G solvation = -28578.450320 eV Core-core repulsion = 24725.045229 eV Total energy + Delta-G solvation = -3853.405091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55959 -41.17141 -39.02965 -38.81339 -36.33779 -35.32813 -35.00173 -33.44440 -32.66956 -31.06691 -29.66844 -27.54328 -26.40155 -24.99623 -24.06573 -23.93433 -23.11640 -21.88238 -20.22934 -20.01033 -19.20854 -19.13505 -18.92870 -17.45198 -17.00029 -16.80801 -16.32992 -16.08330 -15.90519 -15.54026 -15.35029 -15.19741 -14.88630 -14.36996 -14.17127 -13.89831 -13.77555 -13.70335 -13.61713 -13.19033 -13.12981 -13.01364 -12.76237 -12.51225 -12.39217 -12.19319 -12.01838 -11.98525 -11.71615 -11.47754 -11.25594 -11.04763 -10.88933 -10.73825 -10.59827 -10.48157 -10.03323 -8.87686 -7.88292 -5.13377 -0.52438 -0.27917 1.41743 1.48763 1.49507 1.55070 1.97409 2.19408 2.44265 2.59323 2.89354 3.02427 3.13493 3.43444 3.54429 3.67457 3.80190 3.92281 3.97567 4.10915 4.19189 4.26466 4.27320 4.49019 4.53713 4.63417 4.69892 4.80980 4.89955 4.91476 4.99592 5.00522 5.05793 5.15596 5.26408 5.31148 5.35215 5.48133 5.55579 5.61396 5.66746 6.32965 6.35438 6.51792 6.85146 7.16058 7.42448 8.14069 8.44502 9.33114 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.005977 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.162854 B = 4683.167861 C = 6685.685725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.231 3.769 3 N -0.539 5.539 4 C 0.337 3.663 5 N -0.549 5.549 6 C 0.403 3.597 7 O -0.471 6.471 8 C -0.264 4.264 9 C 0.591 3.409 10 O -0.554 6.554 11 N -0.689 5.689 12 C 0.211 3.789 13 C -0.155 4.155 14 C 0.143 3.857 15 N -0.722 5.722 16 C -0.239 4.239 17 H 0.060 0.940 18 C -0.055 4.055 19 N -0.953 5.953 20 Si 0.954 3.046 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.285 1.285 24 C -0.175 4.175 25 C -0.163 4.163 26 C -0.156 4.156 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.247 0.753 31 H 0.431 0.569 32 H 0.407 0.593 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.378 0.622 39 H 0.250 0.750 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 -3.865 -2.531 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.086 3.914 3 N -0.255 5.255 4 C 0.051 3.949 5 N -0.275 5.275 6 C 0.214 3.786 7 O -0.283 6.283 8 C -0.273 4.273 9 C 0.375 3.625 10 O -0.432 6.432 11 N -0.339 5.339 12 C 0.126 3.874 13 C -0.213 4.213 14 C 0.015 3.985 15 N -0.366 5.366 16 C -0.371 4.371 17 H 0.078 0.922 18 C -0.248 4.248 19 N -0.604 5.604 20 Si 0.784 3.216 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.211 1.211 24 C -0.194 4.194 25 C -0.200 4.200 26 C -0.193 4.193 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.263 0.737 31 H 0.295 0.705 32 H 0.242 0.758 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.212 0.788 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.464 -3.444 -1.105 16.856 hybrid contribution -1.607 0.046 -0.607 1.719 sum 14.856 -3.397 -1.712 15.336 Atomic orbital electron populations 1.20864 0.86948 1.05547 1.03535 1.21877 0.97580 0.86570 0.85344 1.68381 1.11129 1.29046 1.16955 1.25835 0.85728 0.97277 0.86059 1.68170 1.42389 0.98653 1.18278 1.19370 0.84958 0.86631 0.87600 1.84647 1.72050 1.35424 1.36135 1.21734 0.95654 0.96361 1.13577 1.17505 0.77757 0.83043 0.84211 1.90743 1.54938 1.64959 1.32535 1.45860 1.53569 1.26720 1.07773 1.19914 0.89400 0.83864 0.94209 1.22225 1.00644 0.97450 1.01000 1.21095 0.91039 0.91350 0.95019 1.42229 1.18474 1.43125 1.32742 1.19371 0.95061 1.14703 1.07947 0.92219 1.25170 1.01269 0.99954 0.98416 1.69734 1.39482 1.29970 1.21182 0.85519 0.81474 0.77410 0.77163 1.21269 1.22003 1.21141 1.22253 1.01953 1.00911 0.94271 1.23173 1.02832 0.90288 1.03731 1.23046 0.94252 1.02177 0.99809 0.90214 0.89637 0.89286 0.73736 0.70477 0.75781 0.90425 0.90112 0.92543 0.96096 0.96289 0.78788 0.94132 0.89298 0.86916 0.88435 0.87890 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 9.85 71.24 0.70 -3.50 16 2 C 0.23 7.59 6.86 42.87 0.29 7.88 16 3 N -0.54 -15.53 10.36 -187.20 -1.94 -17.47 16 4 C 0.34 7.61 12.27 180.86 2.22 9.82 16 5 N -0.55 -13.52 10.45 -312.03 -3.26 -16.78 16 6 C 0.40 10.60 7.85 85.19 0.67 11.26 16 7 O -0.47 -10.14 13.10 -85.74 -1.12 -11.26 16 8 C -0.26 -8.16 5.67 -19.83 -0.11 -8.27 16 9 C 0.59 19.85 4.92 86.70 0.43 20.27 16 10 O -0.55 -22.77 13.34 -3.99 -0.05 -22.83 16 11 N -0.69 -19.81 4.72 -426.05 -2.01 -21.83 16 12 C 0.21 6.36 0.54 3.60 0.00 6.36 16 13 C -0.16 -4.02 7.05 71.98 0.51 -3.51 16 14 C 0.14 5.84 4.95 86.38 0.43 6.26 16 15 N -0.72 -34.30 4.31 -343.46 -1.48 -35.78 16 16 C -0.24 -12.94 9.99 84.03 0.84 -12.10 16 17 H 0.06 3.27 7.83 -2.91 -0.02 3.25 16 18 C -0.05 -2.99 5.50 84.86 0.47 -2.53 16 19 N -0.95 -54.09 13.06 21.65 0.28 -53.81 16 20 Si 0.95 45.45 29.55 68.60 2.03 47.48 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 C -0.17 -4.67 4.86 -10.79 -0.05 -4.72 16 25 C -0.16 -3.32 9.62 30.59 0.29 -3.02 16 26 C -0.16 -2.84 9.72 30.60 0.30 -2.54 16 27 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.09 3.82 6.44 -2.39 -0.02 3.81 16 30 H 0.25 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.43 4.28 9.06 -74.06 -0.67 3.61 16 32 H 0.41 10.01 8.37 -92.71 -0.78 9.24 16 33 H 0.08 1.82 6.81 -2.39 -0.02 1.81 16 34 H 0.08 1.63 7.00 -2.39 -0.02 1.62 16 35 H 0.06 1.78 6.10 -2.39 -0.01 1.77 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.02 0.89 6.24 -2.39 -0.01 0.88 16 38 H 0.38 18.43 6.63 -92.70 -0.61 17.82 16 39 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.09 3.05 7.09 -2.39 -0.02 3.03 16 41 H 0.11 2.02 5.87 -2.39 -0.01 2.01 16 42 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.11 1.62 7.39 -2.39 -0.02 1.60 16 Total: -1.00 -70.37 361.79 -1.56 -71.93 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.98 Total: 38.66 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.98 Total: 21.68 kcal Atomic # 7 Polarization: -137.26 SS G_CDS: -8.41 Total: -145.67 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.18 Total: -34.09 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.37 -1.56 -71.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.146 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds