Wall clock time and date at job start Tue Mar 31 2020 12:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00377 * 2 1 4 4 H 1.48501 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47145 * 299.99734 * 3 2 1 6 6 H 1.48499 * 109.47126 * 60.00250 * 3 2 1 7 7 C 1.38813 * 119.99437 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99872 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00475 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00345 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46879 * 174.90259 * 11 10 9 13 13 H 1.08996 * 109.58583 * 298.76126 * 12 11 10 14 14 C 1.53189 * 109.70639 * 59.12534 * 12 11 10 15 15 C 1.53044 * 109.31037 * 174.49071 * 14 12 11 16 16 C 1.53034 * 109.53962 * 298.62915 * 15 14 12 17 17 C 1.52764 * 109.38188 * 61.24371 * 16 15 14 18 18 N 1.46929 * 109.58260 * 178.48535 * 12 11 10 19 19 C 1.34777 * 120.63163 * 6.43726 * 18 12 11 20 20 O 1.21506 * 119.99975 * 2.69238 * 19 18 12 21 21 C 1.48153 * 120.00001 * 182.69583 * 19 18 12 22 22 C 1.39905 * 121.12135 * 327.08256 * 21 19 18 23 23 N 1.31762 * 119.78625 * 179.97438 * 22 21 19 24 24 N 1.28279 * 122.41840 * 0.02562 * 23 22 21 25 25 C 1.32277 * 122.43744 * 359.97438 * 24 23 22 26 26 O 1.35699 * 120.07534 * 179.97438 * 25 24 23 27 27 C 1.39236 * 119.83652 * 0.02562 * 25 24 23 28 28 H 0.96999 * 119.99583 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99322 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47399 * 59.99755 * 10 9 7 31 31 H 1.09007 * 109.47350 * 299.99809 * 10 9 7 32 32 H 1.08992 * 109.47236 * 54.90072 * 11 10 9 33 33 H 1.08994 * 109.46563 * 294.90115 * 11 10 9 34 34 H 1.08997 * 109.49587 * 294.43978 * 14 12 11 35 35 H 1.09001 * 109.49906 * 54.54080 * 14 12 11 36 36 H 1.08993 * 109.46050 * 58.65513 * 15 14 12 37 37 H 1.09000 * 109.45440 * 178.61404 * 15 14 12 38 38 H 1.08995 * 109.49900 * 181.31930 * 16 15 14 39 39 H 1.08996 * 109.50063 * 301.38911 * 16 15 14 40 40 H 1.08997 * 109.50985 * 185.70650 * 17 16 15 41 41 H 1.09004 * 109.43258 * 65.42369 * 17 16 15 42 42 H 1.07995 * 120.10597 * 359.70079 * 22 21 19 43 43 H 0.96702 * 114.00354 * 270.01829 * 26 25 24 44 44 H 1.08007 * 121.11405 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3882 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 6 1.8241 -6.1410 -0.1283 13 1 2.3728 -6.1569 -1.0700 14 6 2.8043 -6.2882 1.0398 15 6 3.4597 -7.6699 0.9795 16 6 2.3856 -8.7521 1.1110 17 6 1.4007 -8.6327 -0.0506 18 7 0.8744 -7.2615 -0.0927 19 6 -0.4543 -7.0357 -0.0931 20 8 -0.8775 -5.8995 -0.1724 21 6 -1.3990 -8.1730 0.0033 22 6 -1.0937 -9.4164 -0.5606 23 7 -1.9530 -10.4100 -0.4588 24 7 -3.0783 -10.2870 0.1447 25 6 -3.4598 -9.1537 0.7103 26 8 -4.6615 -9.0769 1.3361 27 6 -2.6260 -8.0398 0.6610 28 1 -0.4849 0.8401 0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 2.6845 -3.7147 0.8905 31 1 2.6845 -3.7147 -0.8895 32 1 0.3786 -4.7117 -0.8411 33 1 0.4982 -4.8148 0.9318 34 1 3.5722 -5.5179 0.9696 35 1 2.2663 -6.1816 1.9818 36 1 3.9767 -7.7853 0.0269 37 1 4.1758 -7.7679 1.7954 38 1 2.8556 -9.7353 1.0915 39 1 1.8520 -8.6225 2.0526 40 1 0.5798 -9.3349 0.0946 41 1 1.9142 -8.8559 -0.9858 42 1 -0.1586 -9.5601 -1.0815 43 1 -5.3884 -8.8041 0.7597 44 1 -2.9170 -7.1042 1.1155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753780018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:33 Heat of formation + Delta-G solvation = 32.269075 kcal Electronic energy + Delta-G solvation = -27173.874522 eV Core-core repulsion = 23322.076361 eV Total energy + Delta-G solvation = -3851.798161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94462 -40.51521 -38.05376 -37.70220 -35.47713 -34.10140 -33.02174 -32.67859 -31.78597 -30.61818 -28.07950 -26.38823 -25.39429 -24.48606 -24.10073 -22.54716 -21.43079 -20.81380 -20.07551 -18.99682 -18.53769 -17.24886 -17.15702 -16.80541 -16.22614 -15.94461 -15.48904 -14.82406 -14.72271 -14.64941 -14.33403 -14.02913 -13.78225 -13.67207 -13.38964 -13.19456 -13.08430 -12.79250 -12.64163 -12.23802 -11.82363 -11.52733 -11.49095 -11.15918 -10.97908 -10.87620 -10.84008 -10.67635 -10.51628 -10.42667 -10.15907 -10.07974 -9.96661 -9.64442 -9.04698 -8.84394 -8.73222 -6.83913 -5.69820 -2.98193 -0.07622 0.25314 2.26649 2.53290 2.90786 3.08307 3.46232 3.51066 3.53864 3.69840 3.79005 4.01064 4.36459 4.38614 4.50872 4.58416 4.62996 4.68752 4.83663 4.95851 5.03615 5.09881 5.22182 5.30365 5.42246 5.44685 5.48697 5.60693 5.65989 5.66800 5.85513 5.86384 6.00571 6.14128 6.27339 6.28519 6.47207 6.54529 6.84233 6.98566 7.02247 7.14689 7.74788 7.87128 8.12397 8.49169 9.59872 10.20957 10.55506 11.53170 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.003128 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.183696 B = 8950.319098 C =10533.050309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.149 3.851 11 C -0.118 4.118 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.134 4.134 15 C -0.121 4.121 16 C -0.135 4.135 17 C 0.074 3.926 18 N -0.596 5.596 19 C 0.554 3.446 20 O -0.492 6.492 21 C -0.106 4.106 22 C 0.040 3.960 23 N -0.215 5.215 24 N -0.248 5.248 25 C 0.261 3.739 26 O -0.470 6.470 27 C -0.080 4.080 28 H 0.254 0.746 29 H 0.385 0.615 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.196 0.804 43 H 0.410 0.590 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -24.334 0.399 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.021 3.979 11 C -0.156 4.156 12 C 0.051 3.949 13 H 0.096 0.904 14 C -0.172 4.172 15 C -0.159 4.159 16 C -0.173 4.173 17 C -0.048 4.048 18 N -0.329 5.329 19 C 0.339 3.661 20 O -0.366 6.366 21 C -0.120 4.120 22 C -0.125 4.125 23 N -0.058 5.058 24 N -0.101 5.101 25 C 0.075 3.925 26 O -0.276 6.276 27 C -0.111 4.111 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.213 0.787 43 H 0.269 0.731 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.455 -25.282 0.552 25.292 hybrid contribution 0.220 2.525 0.063 2.535 sum -0.235 -22.757 0.615 22.766 Atomic orbital electron populations 1.69691 1.05086 1.25374 1.57938 1.24753 0.95521 0.97652 1.03283 0.86126 0.78731 0.84251 0.77159 1.20601 1.21909 1.21922 1.19283 0.90982 0.84256 1.42320 0.91242 1.42359 1.06041 0.99892 1.89263 1.20779 0.93603 0.86285 0.97255 1.22274 0.97726 0.90850 1.04727 1.21443 0.89217 0.85622 0.98619 0.90387 1.22077 0.99004 0.97312 0.98824 1.21552 0.97451 0.94482 1.02376 1.21850 0.97194 0.99800 0.98504 1.22563 0.98811 0.83427 1.00007 1.48056 1.04769 1.07735 1.72368 1.17978 0.82127 0.87743 0.78228 1.91008 1.77416 1.20854 1.47357 1.21433 0.95938 0.95825 0.98845 1.25129 1.00511 0.89263 0.97588 1.73105 0.96842 1.26392 1.09496 1.72774 1.10013 1.22402 1.04908 1.20753 0.89437 0.89916 0.92399 1.84807 1.15480 1.90499 1.36847 1.22792 0.92551 1.00462 0.95276 0.93640 0.78109 0.96616 0.96888 0.89036 0.91264 0.89581 0.91321 0.91583 0.91491 0.90447 0.91450 0.88207 0.90138 0.78750 0.73098 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.06 55.49 0.72 -28.48 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -19.58 5.60 -59.91 -0.34 -19.92 16 10 C 0.15 3.09 5.74 -4.04 -0.02 3.06 16 11 C -0.12 -2.06 3.28 -26.73 -0.09 -2.15 16 12 C 0.15 1.92 3.02 -67.60 -0.20 1.72 16 13 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.13 -1.47 4.83 -26.61 -0.13 -1.60 16 15 C -0.12 -0.96 5.89 -26.69 -0.16 -1.11 16 16 C -0.14 -0.92 6.06 -26.83 -0.16 -1.08 16 17 C 0.07 0.52 4.98 -3.93 -0.02 0.50 16 18 N -0.60 -6.40 2.98 -166.47 -0.50 -6.90 16 19 C 0.55 7.01 7.38 -12.19 -0.09 6.92 16 20 O -0.49 -8.27 12.35 5.36 0.07 -8.20 16 21 C -0.11 -1.10 5.55 -104.60 -0.58 -1.68 16 22 C 0.04 0.35 8.79 -16.96 -0.15 0.20 16 23 N -0.21 -2.29 11.48 30.63 0.35 -1.94 16 24 N -0.25 -2.84 11.50 30.49 0.35 -2.49 16 25 C 0.26 2.60 7.85 -16.99 -0.13 2.47 16 26 O -0.47 -3.82 13.57 -18.80 -0.26 -4.07 16 27 C -0.08 -0.81 9.77 -38.61 -0.38 -1.18 16 28 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.39 11.05 7.67 -40.82 -0.31 10.73 16 30 H 0.02 0.32 6.85 -51.93 -0.36 -0.03 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 1.81 6.30 -51.93 -0.33 1.48 16 33 H 0.07 1.32 7.16 -51.93 -0.37 0.95 16 34 H 0.09 1.00 6.87 -51.93 -0.36 0.64 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.61 3.51 -52.38 -0.18 0.43 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.20 1.12 5.42 -52.49 -0.28 0.84 16 43 H 0.41 1.21 9.06 45.56 0.41 1.63 16 44 H 0.17 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -36.36 352.23 -6.80 -43.16 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.13 Total: 7.21 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.36 Total: -1.55 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.60 Total: -59.73 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.19 Total: -12.27 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.36 -6.80 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753780018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.425 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds