Wall clock time and date at job start Tue Mar 31 2020 12:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00377 * 2 1 4 4 H 1.48501 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47145 * 299.99734 * 3 2 1 6 6 H 1.48499 * 109.47126 * 60.00250 * 3 2 1 7 7 C 1.38813 * 119.99437 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99872 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00475 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00345 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46879 * 174.90259 * 11 10 9 13 13 H 1.08996 * 109.58583 * 298.76126 * 12 11 10 14 14 C 1.53189 * 109.70639 * 59.12534 * 12 11 10 15 15 C 1.53044 * 109.31037 * 174.49071 * 14 12 11 16 16 C 1.53034 * 109.53962 * 298.62915 * 15 14 12 17 17 C 1.52764 * 109.38188 * 61.24371 * 16 15 14 18 18 N 1.46929 * 109.58260 * 178.48535 * 12 11 10 19 19 C 1.34777 * 120.63163 * 6.43726 * 18 12 11 20 20 O 1.21506 * 119.99975 * 2.69238 * 19 18 12 21 21 C 1.48153 * 120.00001 * 182.69583 * 19 18 12 22 22 C 1.39905 * 121.12135 * 327.08256 * 21 19 18 23 23 N 1.31762 * 119.78625 * 179.97438 * 22 21 19 24 24 N 1.28279 * 122.41840 * 0.02562 * 23 22 21 25 25 C 1.32277 * 122.43744 * 359.97438 * 24 23 22 26 26 O 1.35699 * 120.07534 * 179.97438 * 25 24 23 27 27 C 1.39236 * 119.83652 * 0.02562 * 25 24 23 28 28 H 0.96999 * 119.99583 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99322 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47399 * 59.99755 * 10 9 7 31 31 H 1.09007 * 109.47350 * 299.99809 * 10 9 7 32 32 H 1.08992 * 109.47236 * 54.90072 * 11 10 9 33 33 H 1.08994 * 109.46563 * 294.90115 * 11 10 9 34 34 H 1.08997 * 109.49587 * 294.43978 * 14 12 11 35 35 H 1.09001 * 109.49906 * 54.54080 * 14 12 11 36 36 H 1.08993 * 109.46050 * 58.65513 * 15 14 12 37 37 H 1.09000 * 109.45440 * 178.61404 * 15 14 12 38 38 H 1.08995 * 109.49900 * 181.31930 * 16 15 14 39 39 H 1.08996 * 109.50063 * 301.38911 * 16 15 14 40 40 H 1.08997 * 109.50985 * 185.70650 * 17 16 15 41 41 H 1.09004 * 109.43258 * 65.42369 * 17 16 15 42 42 H 1.07995 * 120.10597 * 359.70079 * 22 21 19 43 43 H 0.96702 * 114.00354 * 270.01829 * 26 25 24 44 44 H 1.08007 * 121.11405 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3882 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 6 1.8241 -6.1410 -0.1283 13 1 2.3728 -6.1569 -1.0700 14 6 2.8043 -6.2882 1.0398 15 6 3.4597 -7.6699 0.9795 16 6 2.3856 -8.7521 1.1110 17 6 1.4007 -8.6327 -0.0506 18 7 0.8744 -7.2615 -0.0927 19 6 -0.4543 -7.0357 -0.0931 20 8 -0.8775 -5.8995 -0.1724 21 6 -1.3990 -8.1730 0.0033 22 6 -1.0937 -9.4164 -0.5606 23 7 -1.9530 -10.4100 -0.4588 24 7 -3.0783 -10.2870 0.1447 25 6 -3.4598 -9.1537 0.7103 26 8 -4.6615 -9.0769 1.3361 27 6 -2.6260 -8.0398 0.6610 28 1 -0.4849 0.8401 0.0004 29 1 0.3554 -2.3880 -0.0002 30 1 2.6845 -3.7147 0.8905 31 1 2.6845 -3.7147 -0.8895 32 1 0.3786 -4.7117 -0.8411 33 1 0.4982 -4.8148 0.9318 34 1 3.5722 -5.5179 0.9696 35 1 2.2663 -6.1816 1.9818 36 1 3.9767 -7.7853 0.0269 37 1 4.1758 -7.7679 1.7954 38 1 2.8556 -9.7353 1.0915 39 1 1.8520 -8.6225 2.0526 40 1 0.5798 -9.3349 0.0946 41 1 1.9142 -8.8559 -0.9858 42 1 -0.1586 -9.5601 -1.0815 43 1 -5.3884 -8.8041 0.7597 44 1 -2.9170 -7.1042 1.1155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753780018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:32 Heat of formation + Delta-G solvation = 2.132252 kcal Electronic energy + Delta-G solvation = -27175.181352 eV Core-core repulsion = 23322.076361 eV Total energy + Delta-G solvation = -3853.104992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.76380 -41.43064 -38.74261 -38.64522 -37.06863 -35.33806 -34.13504 -33.73391 -32.75621 -32.16777 -29.40427 -27.48027 -26.21024 -25.78641 -25.15519 -24.03389 -22.29607 -22.16484 -20.87618 -19.77073 -19.49768 -19.00960 -17.99207 -17.78003 -17.25057 -16.80797 -16.61366 -16.41453 -15.72701 -15.53002 -15.44177 -15.25442 -14.99160 -14.78647 -14.57143 -14.44214 -14.22543 -13.98054 -13.44798 -13.26171 -12.97211 -12.85961 -12.82216 -12.62566 -12.35081 -12.09326 -11.94830 -11.87807 -11.77363 -11.58193 -11.52058 -11.36232 -11.01971 -10.94089 -10.82907 -10.17224 -9.69730 -9.01334 -7.95677 -5.25941 -0.90069 -0.47287 1.36016 1.45278 1.47556 1.57670 1.64996 2.15798 2.30974 2.54841 2.92863 3.02517 3.25153 3.37314 3.59315 3.65390 3.78062 3.88545 3.91599 4.05107 4.10759 4.22586 4.26524 4.39758 4.48042 4.51419 4.57279 4.68103 4.68244 4.74283 4.79810 4.89542 4.93604 5.07678 5.15371 5.24486 5.35710 5.37945 5.47905 5.48810 5.62374 6.18606 6.26218 6.38428 6.90357 7.30737 7.35198 8.08208 8.31326 9.28678 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.003128 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.183696 B = 8950.319098 C =10533.050309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.148 3.852 11 C -0.098 4.098 12 C 0.159 3.841 13 H 0.095 0.905 14 C -0.131 4.131 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.068 3.932 18 N -0.589 5.589 19 C 0.551 3.449 20 O -0.546 6.546 21 C -0.109 4.109 22 C 0.056 3.944 23 N -0.227 5.227 24 N -0.269 5.269 25 C 0.268 3.732 26 O -0.476 6.476 27 C -0.084 4.084 28 H 0.251 0.749 29 H 0.370 0.630 30 H 0.024 0.976 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.229 0.771 43 H 0.431 0.569 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -26.399 -0.026 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.392 5.392 10 C 0.022 3.978 11 C -0.136 4.136 12 C 0.056 3.944 13 H 0.113 0.887 14 C -0.170 4.170 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.053 4.053 18 N -0.321 5.321 19 C 0.337 3.663 20 O -0.424 6.424 21 C -0.124 4.124 22 C -0.109 4.109 23 N -0.070 5.070 24 N -0.121 5.121 25 C 0.081 3.919 26 O -0.286 6.286 27 C -0.115 4.115 28 H 0.060 0.940 29 H 0.201 0.799 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.245 0.755 43 H 0.294 0.706 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.763 -27.428 0.124 27.485 hybrid contribution -0.468 3.107 0.223 3.150 sum 1.295 -24.321 0.347 24.358 Atomic orbital electron populations 1.69873 1.06894 1.26006 1.59633 1.25690 0.96455 1.01479 1.03715 0.84989 0.78284 0.79291 0.76688 1.18614 1.21925 1.21985 1.19738 0.91596 0.85285 1.41087 0.90268 1.42656 1.05608 1.01563 1.89354 1.20972 0.94062 0.85178 0.97634 1.21970 0.96535 0.92732 1.02336 1.21279 0.89108 0.83797 1.00223 0.88730 1.22032 0.98245 0.99688 0.97006 1.21537 0.97728 0.92306 1.03709 1.21866 0.96671 1.00932 0.97590 1.22933 0.99488 0.80948 1.01881 1.48130 1.03906 1.09029 1.71063 1.18310 0.82936 0.87590 0.77423 1.90994 1.78337 1.23036 1.50050 1.21260 0.95588 0.95740 0.99775 1.25509 1.01047 0.87792 0.96550 1.73069 0.96992 1.27028 1.09894 1.72719 1.10716 1.23054 1.05641 1.20690 0.89921 0.89335 0.91915 1.84764 1.15650 1.90519 1.37624 1.22862 0.92742 1.00566 0.95354 0.94045 0.79918 0.95764 0.95962 0.91599 0.93777 0.90310 0.93134 0.89895 0.90592 0.87370 0.92833 0.87138 0.86902 0.75523 0.70628 0.81691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.74 13.06 21.65 0.28 -62.46 16 2 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 3 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.75 -41.39 5.60 -343.45 -1.92 -43.31 16 10 C 0.15 6.24 5.74 86.38 0.50 6.74 16 11 C -0.10 -3.54 3.28 30.59 0.10 -3.44 16 12 C 0.16 3.84 3.02 44.97 0.14 3.98 16 13 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 14 C -0.13 -2.72 4.83 30.67 0.15 -2.57 16 15 C -0.12 -1.43 5.89 30.62 0.18 -1.25 16 16 C -0.13 -1.31 6.06 30.53 0.19 -1.12 16 17 C 0.07 0.70 4.98 86.22 0.43 1.13 16 18 N -0.59 -11.83 2.98 -798.88 -2.38 -14.21 16 19 C 0.55 14.00 7.38 86.88 0.64 14.64 16 20 O -0.55 -19.45 12.35 -3.74 -0.05 -19.50 16 21 C -0.11 -2.19 5.55 -19.85 -0.11 -2.30 16 22 C 0.06 0.85 8.79 85.11 0.75 1.60 16 23 N -0.23 -4.45 11.48 -57.01 -0.65 -5.10 16 24 N -0.27 -5.88 11.50 -170.30 -1.96 -7.84 16 25 C 0.27 5.20 7.85 84.87 0.67 5.87 16 26 O -0.48 -7.42 13.57 -90.19 -1.22 -8.65 16 27 C -0.08 -1.71 9.77 22.90 0.22 -1.48 16 28 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.37 22.31 7.67 -92.71 -0.71 21.60 16 30 H 0.02 0.99 6.85 -2.39 -0.02 0.98 16 31 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 2.75 6.30 -2.39 -0.02 2.74 16 33 H 0.04 1.80 7.16 -2.39 -0.02 1.78 16 34 H 0.08 1.73 6.87 -2.39 -0.02 1.72 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.11 0.94 3.51 -2.81 -0.01 0.93 16 41 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.23 1.77 5.42 -2.91 -0.02 1.75 16 43 H 0.43 2.22 9.06 -74.06 -0.67 1.55 16 44 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -81.61 352.23 -1.05 -82.66 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.32 Total: 25.09 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.15 Total: 3.80 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -6.63 Total: -132.93 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.27 Total: -28.15 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -81.61 -1.05 -82.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753780018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.796 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds