Wall clock time and date at job start Tue Mar 31 2020 12:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99975 * 2 1 4 4 H 1.48502 * 109.46815 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47019 * 119.99929 * 3 2 1 6 6 H 1.48500 * 109.47173 * 239.99918 * 3 2 1 7 7 C 1.38812 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47111 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47137 * 185.24018 * 11 10 9 13 13 H 1.09002 * 109.58466 * 59.83816 * 12 11 10 14 14 C 1.53191 * 109.58443 * 299.55550 * 12 11 10 15 15 C 1.53040 * 109.31194 * 185.58057 * 14 12 11 16 16 C 1.53039 * 109.54184 * 61.36320 * 15 14 12 17 17 C 1.53195 * 109.30986 * 298.63671 * 16 15 14 18 18 N 1.46919 * 109.58657 * 180.26456 * 12 11 10 19 19 C 1.34783 * 120.62791 * 353.39834 * 18 12 11 20 20 O 1.21509 * 120.00170 * 5.98700 * 19 18 12 21 21 C 1.48155 * 119.99346 * 185.98597 * 19 18 12 22 22 C 1.39897 * 121.12201 * 38.23424 * 21 19 18 23 23 N 1.31765 * 119.78260 * 179.70484 * 22 21 19 24 24 N 1.28276 * 122.41959 * 0.58226 * 23 22 21 25 25 C 1.32280 * 122.43982 * 359.70295 * 24 23 22 26 26 O 1.35695 * 120.08216 * 180.02562 * 25 24 23 27 27 C 1.39243 * 119.83395 * 359.97438 * 25 24 23 28 28 H 0.97001 * 120.00272 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00095 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47054 * 299.99275 * 10 9 7 31 31 H 1.09000 * 109.47343 * 59.99444 * 10 9 7 32 32 H 1.08997 * 109.46796 * 305.23799 * 11 10 9 33 33 H 1.08998 * 109.47179 * 65.23985 * 11 10 9 34 34 H 1.08998 * 109.49776 * 305.53035 * 14 12 11 35 35 H 1.09004 * 109.49998 * 65.62963 * 14 12 11 36 36 H 1.09002 * 109.46289 * 181.39193 * 15 14 12 37 37 H 1.09005 * 109.45620 * 301.34346 * 15 14 12 38 38 H 1.08998 * 109.49364 * 58.58418 * 16 15 14 39 39 H 1.08993 * 109.50190 * 178.65419 * 16 15 14 40 40 H 1.09000 * 109.58256 * 174.41731 * 17 16 15 41 41 H 1.08999 * 109.58702 * 294.69956 * 17 16 15 42 42 H 1.07998 * 120.10772 * 359.96939 * 22 21 19 43 43 H 0.96693 * 114.00186 * 269.97266 * 26 25 24 44 44 H 1.07997 * 121.11470 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6965 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8244 -6.1408 0.1329 13 1 2.3910 -6.1449 1.0641 14 6 2.7821 -6.3023 -1.0518 15 6 3.4362 -7.6844 -0.9889 16 6 2.3581 -8.7661 -1.0884 17 6 1.3956 -8.6324 0.0959 18 7 0.8724 -7.2598 0.1275 19 6 -0.4558 -7.0315 0.1508 20 8 -0.8786 -5.8955 0.0669 21 6 -1.4001 -8.1659 0.2788 22 6 -1.1129 -9.2559 1.1074 23 7 -1.9744 -10.2480 1.2060 24 7 -3.0804 -10.2655 0.5565 25 6 -3.4415 -9.2864 -0.2563 26 8 -4.6233 -9.3541 -0.9198 27 6 -2.6063 -8.1856 -0.4287 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6847 -3.7145 -0.8895 31 1 2.6849 -3.7144 0.8905 32 1 0.3775 -4.7103 0.8408 33 1 0.5003 -4.8164 -0.9318 34 1 2.2266 -6.2048 -1.9845 35 1 3.5525 -5.5327 -1.0044 36 1 4.1368 -7.7927 -1.8170 37 1 3.9710 -7.7905 -0.0450 38 1 1.8067 -8.6453 -2.0208 39 1 2.8267 -9.7499 -1.0677 40 1 0.5709 -9.3352 -0.0224 41 1 1.9264 -8.8448 1.0239 42 1 -0.1900 -9.2821 1.6678 43 1 -4.5650 -9.7834 -1.7842 44 1 -2.8804 -7.3749 -1.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753780019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:36 Heat of formation + Delta-G solvation = 18.798778 kcal Electronic energy + Delta-G solvation = -27142.675350 eV Core-core repulsion = 23290.293073 eV Total energy + Delta-G solvation = -3852.382277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88796 -40.51901 -38.06276 -37.67674 -35.41866 -34.05600 -33.01841 -32.65430 -31.77578 -30.62660 -28.03591 -26.37921 -25.20318 -24.55505 -24.11831 -22.54265 -21.42812 -20.79232 -20.11791 -18.96964 -18.42800 -17.22159 -17.06813 -16.74974 -16.16580 -16.11469 -15.55070 -14.94147 -14.70518 -14.55986 -14.28095 -14.04089 -13.84626 -13.66410 -13.41014 -13.21479 -13.04437 -12.80566 -12.65704 -12.20094 -11.83455 -11.57917 -11.49818 -11.23455 -10.99125 -10.89138 -10.84303 -10.67811 -10.52902 -10.41573 -10.16047 -10.12323 -10.01129 -9.62841 -9.08284 -8.82741 -8.71419 -6.83328 -5.68522 -2.97171 -0.06389 0.26728 2.32735 2.46778 2.82986 3.11869 3.47541 3.51231 3.53041 3.71915 3.79782 4.02660 4.36021 4.39096 4.53850 4.56774 4.63238 4.67693 4.83163 4.96291 5.03013 5.08716 5.21759 5.32947 5.41760 5.44741 5.47572 5.60618 5.64861 5.66156 5.84592 5.85585 6.00859 6.14181 6.26974 6.28694 6.47869 6.54630 6.83200 6.99411 7.02779 7.13394 7.74463 7.86064 8.13145 8.50314 9.60807 10.21956 10.56514 11.54263 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.003097 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.790248 B = 9038.624397 C =10536.397223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.149 3.851 11 C -0.115 4.115 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.134 4.134 15 C -0.121 4.121 16 C -0.134 4.134 17 C 0.094 3.906 18 N -0.598 5.598 19 C 0.553 3.447 20 O -0.489 6.489 21 C -0.105 4.105 22 C 0.053 3.947 23 N -0.215 5.215 24 N -0.249 5.249 25 C 0.261 3.739 26 O -0.469 6.469 27 C -0.083 4.083 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.185 0.815 43 H 0.408 0.592 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -25.812 -2.972 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.020 3.980 11 C -0.153 4.153 12 C 0.051 3.949 13 H 0.096 0.904 14 C -0.172 4.172 15 C -0.159 4.159 16 C -0.172 4.172 17 C -0.029 4.029 18 N -0.332 5.332 19 C 0.338 3.662 20 O -0.363 6.363 21 C -0.119 4.119 22 C -0.112 4.112 23 N -0.058 5.058 24 N -0.101 5.101 25 C 0.075 3.925 26 O -0.275 6.275 27 C -0.114 4.114 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.201 0.799 43 H 0.267 0.733 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.543 -26.198 -1.927 26.274 hybrid contribution 0.636 2.044 -1.061 2.389 sum 1.179 -24.154 -2.988 24.367 Atomic orbital electron populations 1.69669 1.05085 1.25631 1.57710 1.24752 0.95509 0.97639 1.03221 0.86275 0.78494 0.83679 0.77774 1.21703 1.21327 1.21334 1.19190 0.90916 0.84284 1.42659 0.91351 1.42340 1.06032 0.99865 1.89294 1.20784 0.93614 0.86325 0.97239 1.22258 0.97538 0.90820 1.04698 1.21447 0.89267 0.85668 0.98557 0.90373 1.22074 0.99147 0.97246 0.98715 1.21553 0.97409 0.94496 1.02405 1.21917 0.97316 0.99717 0.98297 1.22140 0.98239 0.82783 0.99711 1.48059 1.04780 1.07697 1.72649 1.18005 0.82100 0.87763 0.78295 1.91033 1.77400 1.20891 1.46960 1.21440 0.96282 0.96396 0.97831 1.24781 1.00583 0.89736 0.96095 1.73086 0.96796 1.21920 1.13993 1.72783 1.09320 1.23515 1.04485 1.20759 0.86539 0.91186 0.94046 1.84835 1.25347 1.81404 1.35877 1.22777 0.91171 0.99165 0.98255 0.93519 0.78092 0.96594 0.96949 0.89749 0.90732 0.91299 0.89620 0.91500 0.91580 0.91458 0.90543 0.89766 0.90365 0.79861 0.73322 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.06 55.49 0.72 -28.62 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -19.65 5.60 -59.91 -0.34 -19.98 16 10 C 0.15 3.08 5.77 -4.04 -0.02 3.06 16 11 C -0.12 -2.01 3.25 -26.73 -0.09 -2.10 16 12 C 0.15 1.89 3.01 -67.60 -0.20 1.69 16 13 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.13 -1.43 4.86 -26.61 -0.13 -1.56 16 15 C -0.12 -0.92 5.88 -26.69 -0.16 -1.08 16 16 C -0.13 -0.86 6.08 -26.61 -0.16 -1.02 16 17 C 0.09 0.64 4.89 -3.71 -0.02 0.62 16 18 N -0.60 -6.29 2.97 -166.21 -0.49 -6.78 16 19 C 0.55 6.96 7.32 -12.19 -0.09 6.88 16 20 O -0.49 -8.32 12.35 5.36 0.07 -8.26 16 21 C -0.11 -1.08 5.21 -104.60 -0.54 -1.62 16 22 C 0.05 0.47 8.72 -16.96 -0.15 0.33 16 23 N -0.21 -2.32 11.48 30.79 0.35 -1.97 16 24 N -0.25 -2.85 11.50 30.49 0.35 -2.50 16 25 C 0.26 2.57 7.85 -16.99 -0.13 2.44 16 26 O -0.47 -3.74 13.57 -18.79 -0.26 -4.00 16 27 C -0.08 -0.82 9.82 -38.60 -0.38 -1.20 16 28 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.39 11.11 7.67 -40.82 -0.31 10.80 16 30 H 0.02 0.33 6.87 -51.93 -0.36 -0.03 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 1.67 6.48 -51.93 -0.34 1.33 16 33 H 0.07 1.43 7.00 -51.93 -0.36 1.06 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.98 6.89 -51.93 -0.36 0.62 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.50 4.65 -51.93 -0.24 0.25 16 41 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 42 H 0.18 1.13 6.47 -52.49 -0.34 0.79 16 43 H 0.41 0.96 9.06 45.56 0.41 1.37 16 44 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -36.66 353.97 -6.85 -43.50 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.25 Total: 6.58 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.32 Total: -1.24 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.60 Total: -59.85 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.19 Total: -12.25 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.66 -6.85 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753780019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.301 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds