Wall clock time and date at job start Tue Mar 31 2020 12:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99975 * 2 1 4 4 H 1.48502 * 109.46815 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47019 * 119.99929 * 3 2 1 6 6 H 1.48500 * 109.47173 * 239.99918 * 3 2 1 7 7 C 1.38812 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47111 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47137 * 185.24018 * 11 10 9 13 13 H 1.09002 * 109.58466 * 59.83816 * 12 11 10 14 14 C 1.53191 * 109.58443 * 299.55550 * 12 11 10 15 15 C 1.53040 * 109.31194 * 185.58057 * 14 12 11 16 16 C 1.53039 * 109.54184 * 61.36320 * 15 14 12 17 17 C 1.53195 * 109.30986 * 298.63671 * 16 15 14 18 18 N 1.46919 * 109.58657 * 180.26456 * 12 11 10 19 19 C 1.34783 * 120.62791 * 353.39834 * 18 12 11 20 20 O 1.21509 * 120.00170 * 5.98700 * 19 18 12 21 21 C 1.48155 * 119.99346 * 185.98597 * 19 18 12 22 22 C 1.39897 * 121.12201 * 38.23424 * 21 19 18 23 23 N 1.31765 * 119.78260 * 179.70484 * 22 21 19 24 24 N 1.28276 * 122.41959 * 0.58226 * 23 22 21 25 25 C 1.32280 * 122.43982 * 359.70295 * 24 23 22 26 26 O 1.35695 * 120.08216 * 180.02562 * 25 24 23 27 27 C 1.39243 * 119.83395 * 359.97438 * 25 24 23 28 28 H 0.97001 * 120.00272 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00095 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47054 * 299.99275 * 10 9 7 31 31 H 1.09000 * 109.47343 * 59.99444 * 10 9 7 32 32 H 1.08997 * 109.46796 * 305.23799 * 11 10 9 33 33 H 1.08998 * 109.47179 * 65.23985 * 11 10 9 34 34 H 1.08998 * 109.49776 * 305.53035 * 14 12 11 35 35 H 1.09004 * 109.49998 * 65.62963 * 14 12 11 36 36 H 1.09002 * 109.46289 * 181.39193 * 15 14 12 37 37 H 1.09005 * 109.45620 * 301.34346 * 15 14 12 38 38 H 1.08998 * 109.49364 * 58.58418 * 16 15 14 39 39 H 1.08993 * 109.50190 * 178.65419 * 16 15 14 40 40 H 1.09000 * 109.58256 * 174.41731 * 17 16 15 41 41 H 1.08999 * 109.58702 * 294.69956 * 17 16 15 42 42 H 1.07998 * 120.10772 * 359.96939 * 22 21 19 43 43 H 0.96693 * 114.00186 * 269.97266 * 26 25 24 44 44 H 1.07997 * 121.11470 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6965 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8244 -6.1408 0.1329 13 1 2.3910 -6.1449 1.0641 14 6 2.7821 -6.3023 -1.0518 15 6 3.4362 -7.6844 -0.9889 16 6 2.3581 -8.7661 -1.0884 17 6 1.3956 -8.6324 0.0959 18 7 0.8724 -7.2598 0.1275 19 6 -0.4558 -7.0315 0.1508 20 8 -0.8786 -5.8955 0.0669 21 6 -1.4001 -8.1659 0.2788 22 6 -1.1129 -9.2559 1.1074 23 7 -1.9744 -10.2480 1.2060 24 7 -3.0804 -10.2655 0.5565 25 6 -3.4415 -9.2864 -0.2563 26 8 -4.6233 -9.3541 -0.9198 27 6 -2.6063 -8.1856 -0.4287 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6847 -3.7145 -0.8895 31 1 2.6849 -3.7144 0.8905 32 1 0.3775 -4.7103 0.8408 33 1 0.5003 -4.8164 -0.9318 34 1 2.2266 -6.2048 -1.9845 35 1 3.5525 -5.5327 -1.0044 36 1 4.1368 -7.7927 -1.8170 37 1 3.9710 -7.7905 -0.0450 38 1 1.8067 -8.6453 -2.0208 39 1 2.8267 -9.7499 -1.0677 40 1 0.5709 -9.3352 -0.0224 41 1 1.9264 -8.8448 1.0239 42 1 -0.1900 -9.2821 1.6678 43 1 -4.5650 -9.7834 -1.7842 44 1 -2.8804 -7.3749 -1.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753780019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:35 Heat of formation + Delta-G solvation = -11.647954 kcal Electronic energy + Delta-G solvation = -27143.995619 eV Core-core repulsion = 23290.293073 eV Total energy + Delta-G solvation = -3853.702546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70221 -41.43228 -38.74381 -38.60746 -37.03636 -35.25924 -34.14257 -33.71158 -32.66860 -32.22030 -29.35705 -27.45807 -26.04990 -25.73912 -25.22810 -24.02876 -22.27797 -22.15213 -20.89699 -19.73259 -19.41838 -18.97098 -17.93945 -17.62519 -17.16707 -16.99499 -16.67597 -16.38601 -15.80069 -15.51168 -15.42779 -15.20007 -14.94920 -14.76399 -14.58842 -14.42383 -14.28748 -13.95245 -13.40769 -13.26998 -12.98675 -12.83228 -12.78675 -12.58135 -12.40657 -12.19188 -11.95868 -11.90346 -11.77853 -11.59467 -11.51799 -11.37458 -11.02175 -10.91624 -10.85887 -10.21119 -9.67256 -9.01278 -7.95064 -5.25605 -0.88041 -0.45044 1.39546 1.44986 1.49805 1.55964 1.61334 2.11077 2.34356 2.55290 2.95435 3.03545 3.27314 3.37459 3.61430 3.66180 3.79761 3.90069 3.94697 4.05429 4.11239 4.23593 4.28425 4.40324 4.49248 4.52238 4.60112 4.69112 4.69618 4.77169 4.79944 4.90670 4.93822 5.08467 5.16618 5.25095 5.36312 5.39247 5.47795 5.49691 5.62774 6.19033 6.26292 6.41447 6.90335 7.30822 7.36445 8.08596 8.31706 9.28857 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.003097 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.790248 B = 9038.624397 C =10536.397223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.081 4.081 3 Si 0.980 3.020 4 H -0.296 1.296 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.148 3.852 11 C -0.095 4.095 12 C 0.158 3.842 13 H 0.095 0.905 14 C -0.131 4.131 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.087 3.913 18 N -0.590 5.590 19 C 0.551 3.449 20 O -0.546 6.546 21 C -0.108 4.108 22 C 0.068 3.932 23 N -0.228 5.228 24 N -0.270 5.270 25 C 0.269 3.731 26 O -0.476 6.476 27 C -0.086 4.086 28 H 0.251 0.749 29 H 0.369 0.631 30 H 0.025 0.975 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.215 0.785 43 H 0.431 0.569 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -27.911 -2.724 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.808 3.192 4 H -0.222 1.222 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.021 3.979 11 C -0.133 4.133 12 C 0.056 3.944 13 H 0.113 0.887 14 C -0.169 4.169 15 C -0.153 4.153 16 C -0.169 4.169 17 C -0.034 4.034 18 N -0.322 5.322 19 C 0.338 3.662 20 O -0.424 6.424 21 C -0.122 4.122 22 C -0.097 4.097 23 N -0.071 5.071 24 N -0.122 5.122 25 C 0.082 3.918 26 O -0.286 6.286 27 C -0.116 4.116 28 H 0.060 0.940 29 H 0.200 0.800 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.231 0.769 43 H 0.294 0.706 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.821 -28.395 -1.699 28.585 hybrid contribution -0.060 2.619 -1.185 2.875 sum 2.761 -25.776 -2.885 26.083 Atomic orbital electron populations 1.69863 1.06923 1.26170 1.59476 1.25701 0.96437 1.01521 1.03642 0.85119 0.77110 0.78584 0.78387 1.22182 1.20067 1.20052 1.19674 0.91606 0.85316 1.41406 0.90249 1.42643 1.05582 1.01570 1.89399 1.20983 0.94080 0.85199 0.97640 1.21949 0.96316 0.92757 1.02264 1.21286 0.89147 0.83790 1.00219 0.88701 1.22026 0.98372 0.99625 0.96889 1.21536 0.97721 0.92320 1.03703 1.21927 0.96743 1.00772 0.97447 1.22524 0.99036 0.80303 1.01522 1.48125 1.03861 1.08993 1.71245 1.18333 0.82927 0.87543 0.77419 1.91020 1.78365 1.23182 1.49839 1.21257 0.95995 0.96155 0.98822 1.25115 1.01070 0.88349 0.95199 1.73048 0.97003 1.22658 1.14359 1.72723 1.09989 1.24331 1.05179 1.20700 0.86692 0.90608 0.93796 1.84790 1.24534 1.81830 1.37399 1.22863 0.91257 0.99232 0.98288 0.94037 0.79956 0.95665 0.96037 0.92477 0.93229 0.93030 0.90388 0.90551 0.89990 0.92607 0.87542 0.88578 0.87328 0.76868 0.70586 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.11 13.06 21.65 0.28 -62.83 16 2 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 3 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 4 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 5 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.75 -41.59 5.60 -343.45 -1.92 -43.52 16 10 C 0.15 6.23 5.77 86.38 0.50 6.73 16 11 C -0.09 -3.44 3.25 30.60 0.10 -3.34 16 12 C 0.16 3.78 3.01 44.98 0.14 3.92 16 13 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.13 -2.64 4.86 30.67 0.15 -2.49 16 15 C -0.12 -1.37 5.88 30.62 0.18 -1.19 16 16 C -0.13 -1.20 6.08 30.67 0.19 -1.01 16 17 C 0.09 0.87 4.89 86.36 0.42 1.29 16 18 N -0.59 -11.60 2.97 -798.06 -2.37 -13.97 16 19 C 0.55 13.95 7.32 86.88 0.64 14.59 16 20 O -0.55 -19.74 12.35 -3.74 -0.05 -19.78 16 21 C -0.11 -2.14 5.21 -19.85 -0.10 -2.25 16 22 C 0.07 1.07 8.72 85.10 0.74 1.81 16 23 N -0.23 -4.55 11.48 -56.51 -0.65 -5.20 16 24 N -0.27 -5.90 11.50 -170.30 -1.96 -7.86 16 25 C 0.27 5.11 7.85 84.87 0.67 5.78 16 26 O -0.48 -7.19 13.57 -90.15 -1.22 -8.41 16 27 C -0.09 -1.68 9.82 22.90 0.22 -1.46 16 28 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.37 22.44 7.67 -92.71 -0.71 21.73 16 30 H 0.03 1.03 6.87 -2.39 -0.02 1.02 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 2.40 6.48 -2.39 -0.02 2.38 16 33 H 0.05 2.03 7.00 -2.39 -0.02 2.01 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.68 6.89 -2.38 -0.02 1.67 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.10 0.79 4.65 -2.39 -0.01 0.77 16 41 H 0.11 0.54 8.11 -2.39 -0.02 0.52 16 42 H 0.21 1.87 6.47 -2.91 -0.02 1.85 16 43 H 0.43 1.50 9.06 -74.06 -0.67 0.83 16 44 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -82.54 353.97 -1.05 -83.58 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.33 Total: 24.19 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.14 Total: 4.17 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -6.62 Total: -133.38 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.27 Total: -28.19 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -82.54 -1.05 -83.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753780019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.935 kcal (2) G-P(sol) polarization free energy of solvation -82.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds