Wall clock time and date at job start Tue Mar 31 2020 12:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47306 * 300.00631 * 3 2 1 6 6 H 1.48504 * 109.47145 * 60.00364 * 3 2 1 7 7 C 1.38817 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99991 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99638 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47076 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.81638 * 51.66189 * 11 10 9 13 13 C 1.54894 * 110.75667 * 288.33264 * 11 10 9 14 14 C 1.54265 * 104.19155 * 203.74135 * 13 11 10 15 15 C 1.53871 * 106.60092 * 23.60809 * 14 13 11 16 16 C 1.54256 * 106.59884 * 359.97438 * 15 14 13 17 17 H 1.09000 * 110.48793 * 95.20268 * 16 15 14 18 18 N 1.46502 * 110.48577 * 217.71072 * 16 15 14 19 19 C 1.34781 * 119.99983 * 273.54355 * 18 16 15 20 20 O 1.21613 * 120.00063 * 0.02562 * 19 18 16 21 21 C 1.47388 * 119.99936 * 179.97438 * 19 18 16 22 22 C 1.38211 * 126.46234 * 0.02612 * 21 19 18 23 23 N 1.34263 * 108.39324 * 179.71387 * 22 21 19 24 24 H 0.97008 * 125.38888 * 180.27079 * 23 22 21 25 25 C 1.37771 * 109.21926 * 0.26569 * 23 22 21 26 26 C 1.46816 * 125.84924 * 179.97438 * 25 23 22 27 27 N 1.34770 * 120.00179 * 0.02562 * 26 25 23 28 28 O 1.21676 * 119.99623 * 180.02562 * 26 25 23 29 29 C 1.36355 * 108.30199 * 359.97438 * 25 23 22 30 30 H 0.97004 * 119.99641 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00236 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46939 * 60.00439 * 10 9 7 33 33 H 1.09001 * 109.47508 * 299.99835 * 10 9 7 34 34 H 1.08999 * 110.48620 * 85.06494 * 13 11 10 35 35 H 1.08993 * 110.59597 * 322.47419 * 13 11 10 36 36 H 1.08997 * 110.03343 * 264.31953 * 14 13 11 37 37 H 1.09002 * 110.03040 * 142.89478 * 14 13 11 38 38 H 1.09001 * 110.03342 * 240.70776 * 15 14 13 39 39 H 1.09005 * 110.03180 * 119.28848 * 15 14 13 40 40 H 0.96994 * 120.00107 * 93.55231 * 18 16 15 41 41 H 1.08002 * 125.80487 * 359.97438 * 22 21 19 42 42 H 0.97005 * 119.99828 * 359.97438 * 27 26 25 43 43 H 0.96998 * 120.00411 * 180.02562 * 27 26 25 44 44 H 1.08002 * 126.49605 * 180.02562 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3320 -4.7033 -0.8006 13 6 0.3603 -4.9412 1.3734 14 6 -0.0928 -6.4145 1.4374 15 6 0.8250 -7.1985 0.4832 16 6 1.8033 -6.1744 -0.1279 17 1 2.7365 -6.1553 0.4351 18 7 2.0615 -6.4887 -1.5353 19 6 3.0351 -7.3611 -1.8634 20 8 3.6989 -7.8878 -0.9911 21 6 3.2944 -7.6776 -3.2794 22 6 2.6251 -7.1607 -4.3725 23 7 3.1588 -7.6898 -5.4851 24 1 2.8764 -7.4930 -6.3921 25 6 4.1710 -8.5563 -5.1348 26 6 4.9985 -9.3332 -6.0660 27 7 4.7961 -9.2300 -7.3944 28 8 5.8671 -10.0702 -5.6383 29 6 4.2726 -8.5687 -3.7751 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7145 0.8895 33 1 2.6847 -3.7146 -0.8905 34 1 -0.5009 -4.2748 1.4214 35 1 1.0575 -4.7211 2.1817 36 1 -1.1298 -6.5006 1.1130 37 1 0.0136 -6.7939 2.4537 38 1 0.2334 -7.6653 -0.3043 39 1 1.3767 -7.9587 1.0364 40 1 1.5319 -6.0688 -2.2310 41 1 1.8138 -6.4486 -4.3379 42 1 4.1034 -8.6427 -7.7353 43 1 5.3426 -9.7436 -8.0097 44 1 4.9711 -9.1469 -3.1884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753902433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:45 Heat of formation + Delta-G solvation = -33.294101 kcal Electronic energy + Delta-G solvation = -26131.096235 eV Core-core repulsion = 22276.455041 eV Total energy + Delta-G solvation = -3854.641194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90484 -39.71902 -39.11128 -37.69810 -34.44249 -34.27211 -33.54250 -31.61918 -31.39460 -29.94420 -28.56683 -27.41268 -24.59939 -23.59497 -23.21450 -22.05972 -20.64630 -20.35980 -20.13519 -19.49052 -19.06919 -17.47110 -17.08610 -16.57549 -16.23840 -16.05202 -15.64150 -14.99420 -14.61216 -14.42712 -14.40975 -14.07495 -13.83985 -13.71764 -13.60906 -13.19684 -13.09916 -12.86978 -12.63131 -12.10343 -11.88208 -11.25425 -10.93370 -10.89374 -10.74102 -10.71715 -10.42900 -10.29466 -10.26854 -10.20829 -9.96491 -9.86528 -9.69217 -9.44926 -8.90910 -8.87290 -8.69531 -6.91221 -5.77262 -3.05062 1.02684 1.63555 2.51393 2.91268 2.93265 3.35381 3.42561 3.49077 3.50943 3.52840 4.42781 4.50743 4.55855 4.66935 4.77961 4.88795 4.98007 5.08396 5.46879 5.50807 5.57369 5.64688 5.66607 5.71785 5.81230 5.85849 5.98436 6.04010 6.12916 6.21179 6.23969 6.30875 6.35098 6.36002 6.53159 6.59291 6.66446 6.70837 6.80710 6.86970 6.94514 7.65932 7.71399 7.72880 8.38721 8.42153 9.53562 10.11704 10.46727 11.45761 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.002743 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.679694 B =10205.783835 C =11822.458529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.101 4.101 12 H 0.080 0.920 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.095 0.905 18 N -0.716 5.716 19 C 0.588 3.412 20 O -0.542 6.542 21 C -0.227 4.227 22 C 0.079 3.921 23 N -0.527 5.527 24 H 0.419 0.581 25 C -0.075 4.075 26 C 0.596 3.404 27 N -0.857 5.857 28 O -0.527 6.527 29 C -0.037 4.037 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.397 0.603 41 H 0.185 0.815 42 H 0.395 0.605 43 H 0.408 0.592 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -18.434 -13.956 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.149 4.149 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.044 3.956 17 H 0.113 0.887 18 N -0.366 5.366 19 C 0.375 3.625 20 O -0.420 6.420 21 C -0.237 4.237 22 C -0.063 4.063 23 N -0.122 5.122 24 H 0.257 0.743 25 C -0.185 4.185 26 C 0.382 3.618 27 N -0.421 5.421 28 O -0.402 6.402 29 C -0.063 4.063 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.202 0.798 42 H 0.223 0.777 43 H 0.240 0.760 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.731 -19.151 -13.028 23.227 hybrid contribution -0.521 1.508 -1.325 2.074 sum 1.210 -17.643 -14.353 22.776 Atomic orbital electron populations 1.69668 1.05070 1.25446 1.58179 1.24721 0.95519 0.97630 1.03230 0.86136 0.78859 0.84188 0.77156 1.20557 1.21957 1.21880 1.19288 0.91073 0.84200 1.42118 0.91210 1.42343 1.05801 0.99916 1.89454 1.20654 0.92942 0.85106 0.97967 1.22543 0.97811 0.93290 0.98411 0.90209 1.22289 1.00723 0.95222 0.96694 1.22125 0.98946 0.95879 0.99157 1.22510 0.97456 0.98138 0.98970 1.21881 0.99039 0.93787 0.80914 0.88734 1.45874 1.36587 1.45337 1.08832 1.17346 0.79511 0.78691 0.86945 1.90781 1.48925 1.52254 1.50005 1.19765 1.04031 1.07161 0.92769 1.22564 0.99539 0.99301 0.84846 1.41667 1.27461 1.34056 1.09009 0.74277 1.19956 0.99264 1.04494 0.94825 1.17027 0.82302 0.80732 0.81711 1.43705 1.41096 1.49961 1.07298 1.90918 1.33050 1.38829 1.77448 1.21146 0.97250 0.96725 0.91191 0.93641 0.78310 0.96131 0.96365 0.90843 0.91188 0.92018 0.92004 0.91774 0.91530 0.76860 0.79839 0.77722 0.76004 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -17.96 5.52 -59.91 -0.33 -18.29 16 10 C 0.16 3.16 5.70 -4.04 -0.02 3.14 16 11 C -0.10 -1.53 2.50 -88.64 -0.22 -1.75 16 12 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 13 C -0.11 -1.63 6.20 -25.07 -0.16 -1.78 16 14 C -0.12 -1.48 6.80 -25.62 -0.17 -1.65 16 15 C -0.13 -1.62 6.53 -25.62 -0.17 -1.79 16 16 C 0.15 2.04 2.60 -66.29 -0.17 1.87 16 17 H 0.09 1.50 7.57 -51.93 -0.39 1.10 16 18 N -0.72 -8.66 5.10 -53.30 -0.27 -8.93 16 19 C 0.59 8.17 7.81 -12.53 -0.10 8.07 16 20 O -0.54 -9.68 16.63 5.27 0.09 -9.59 16 21 C -0.23 -2.54 6.13 -105.02 -0.64 -3.18 16 22 C 0.08 0.55 11.43 -16.50 -0.19 0.36 16 23 N -0.53 -2.84 5.91 -9.30 -0.05 -2.89 16 24 H 0.42 0.55 8.14 -40.82 -0.33 0.22 16 25 C -0.08 -0.68 6.99 -82.41 -0.58 -1.26 16 26 C 0.60 5.53 8.06 -12.79 -0.10 5.43 16 27 N -0.86 -3.68 8.87 30.29 0.27 -3.41 16 28 O -0.53 -7.25 17.69 5.21 0.09 -7.16 16 29 C -0.04 -0.44 10.37 -39.10 -0.41 -0.84 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.38 9.80 7.67 -40.82 -0.31 9.49 16 32 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.73 8.04 -51.93 -0.42 0.32 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 3.77 7.44 -40.82 -0.30 3.46 16 41 H 0.18 0.68 7.44 -52.49 -0.39 0.29 16 42 H 0.40 0.38 7.91 -40.82 -0.32 0.06 16 43 H 0.41 1.34 8.93 -40.82 -0.36 0.98 16 44 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -37.69 372.27 -8.24 -45.93 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.16 Total: 9.14 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.18 Total: -0.60 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.34 Total: -60.59 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.18 Total: -16.75 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.69 -8.24 -45.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.637 kcal (2) G-P(sol) polarization free energy of solvation -37.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds