Wall clock time and date at job start Tue Mar 31 2020 12:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47306 * 300.00631 * 3 2 1 6 6 H 1.48504 * 109.47145 * 60.00364 * 3 2 1 7 7 C 1.38817 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99991 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99638 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47076 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.81638 * 51.66189 * 11 10 9 13 13 C 1.54894 * 110.75667 * 288.33264 * 11 10 9 14 14 C 1.54265 * 104.19155 * 203.74135 * 13 11 10 15 15 C 1.53871 * 106.60092 * 23.60809 * 14 13 11 16 16 C 1.54256 * 106.59884 * 359.97438 * 15 14 13 17 17 H 1.09000 * 110.48793 * 95.20268 * 16 15 14 18 18 N 1.46502 * 110.48577 * 217.71072 * 16 15 14 19 19 C 1.34781 * 119.99983 * 273.54355 * 18 16 15 20 20 O 1.21613 * 120.00063 * 0.02562 * 19 18 16 21 21 C 1.47388 * 119.99936 * 179.97438 * 19 18 16 22 22 C 1.38211 * 126.46234 * 0.02612 * 21 19 18 23 23 N 1.34263 * 108.39324 * 179.71387 * 22 21 19 24 24 H 0.97008 * 125.38888 * 180.27079 * 23 22 21 25 25 C 1.37771 * 109.21926 * 0.26569 * 23 22 21 26 26 C 1.46816 * 125.84924 * 179.97438 * 25 23 22 27 27 N 1.34770 * 120.00179 * 0.02562 * 26 25 23 28 28 O 1.21676 * 119.99623 * 180.02562 * 26 25 23 29 29 C 1.36355 * 108.30199 * 359.97438 * 25 23 22 30 30 H 0.97004 * 119.99641 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00236 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46939 * 60.00439 * 10 9 7 33 33 H 1.09001 * 109.47508 * 299.99835 * 10 9 7 34 34 H 1.08999 * 110.48620 * 85.06494 * 13 11 10 35 35 H 1.08993 * 110.59597 * 322.47419 * 13 11 10 36 36 H 1.08997 * 110.03343 * 264.31953 * 14 13 11 37 37 H 1.09002 * 110.03040 * 142.89478 * 14 13 11 38 38 H 1.09001 * 110.03342 * 240.70776 * 15 14 13 39 39 H 1.09005 * 110.03180 * 119.28848 * 15 14 13 40 40 H 0.96994 * 120.00107 * 93.55231 * 18 16 15 41 41 H 1.08002 * 125.80487 * 359.97438 * 22 21 19 42 42 H 0.97005 * 119.99828 * 359.97438 * 27 26 25 43 43 H 0.96998 * 120.00411 * 180.02562 * 27 26 25 44 44 H 1.08002 * 126.49605 * 180.02562 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3320 -4.7033 -0.8006 13 6 0.3603 -4.9412 1.3734 14 6 -0.0928 -6.4145 1.4374 15 6 0.8250 -7.1985 0.4832 16 6 1.8033 -6.1744 -0.1279 17 1 2.7365 -6.1553 0.4351 18 7 2.0615 -6.4887 -1.5353 19 6 3.0351 -7.3611 -1.8634 20 8 3.6989 -7.8878 -0.9911 21 6 3.2944 -7.6776 -3.2794 22 6 2.6251 -7.1607 -4.3725 23 7 3.1588 -7.6898 -5.4851 24 1 2.8764 -7.4930 -6.3921 25 6 4.1710 -8.5563 -5.1348 26 6 4.9985 -9.3332 -6.0660 27 7 4.7961 -9.2300 -7.3944 28 8 5.8671 -10.0702 -5.6383 29 6 4.2726 -8.5687 -3.7751 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7145 0.8895 33 1 2.6847 -3.7146 -0.8905 34 1 -0.5009 -4.2748 1.4214 35 1 1.0575 -4.7211 2.1817 36 1 -1.1298 -6.5006 1.1130 37 1 0.0136 -6.7939 2.4537 38 1 0.2334 -7.6653 -0.3043 39 1 1.3767 -7.9587 1.0364 40 1 1.5319 -6.0688 -2.2310 41 1 1.8138 -6.4486 -4.3379 42 1 4.1034 -8.6427 -7.7353 43 1 5.3426 -9.7436 -8.0097 44 1 4.9711 -9.1469 -3.1884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753902433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:44 Heat of formation + Delta-G solvation = -64.592877 kcal Electronic energy + Delta-G solvation = -26132.453452 eV Core-core repulsion = 22276.455041 eV Total energy + Delta-G solvation = -3855.998410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.61614 -40.78205 -39.92236 -38.89316 -36.26725 -34.92879 -34.67397 -33.27512 -32.36128 -30.71423 -30.14282 -28.46634 -26.33229 -24.55061 -24.11216 -23.61246 -21.55703 -21.35864 -21.13401 -20.33408 -19.99834 -19.11271 -18.01345 -17.58663 -17.24285 -16.80735 -16.58877 -16.40175 -16.06654 -15.59137 -15.38510 -15.11732 -15.02358 -14.93557 -14.66020 -14.59667 -14.41341 -14.17463 -13.52018 -13.41448 -13.09185 -13.00407 -12.81323 -12.32640 -12.09704 -12.00637 -11.85288 -11.56526 -11.54704 -11.53526 -11.25242 -11.01401 -10.90447 -10.85963 -10.26401 -9.94128 -9.42510 -8.96228 -7.93540 -5.21001 0.34528 0.76771 1.48181 1.49418 1.59017 1.93305 2.15767 2.20778 2.54426 2.56718 2.57409 3.39769 3.50927 3.72774 3.84088 3.91848 3.95456 4.07785 4.18742 4.25465 4.47224 4.53269 4.57043 4.63101 4.72510 4.74490 4.79898 4.87583 5.02068 5.09348 5.20060 5.28794 5.30108 5.33630 5.35046 5.50248 5.50522 5.55811 5.69073 5.77384 6.24312 6.29565 6.42955 6.70747 7.16218 7.36737 7.37663 8.11930 8.37674 9.29787 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.002743 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.679694 B =10205.783835 C =11822.458529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.088 4.088 12 H 0.093 0.907 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.155 3.845 17 H 0.068 0.932 18 N -0.704 5.704 19 C 0.586 3.414 20 O -0.594 6.594 21 C -0.263 4.263 22 C 0.117 3.883 23 N -0.497 5.497 24 H 0.444 0.556 25 C -0.070 4.070 26 C 0.594 3.406 27 N -0.828 5.828 28 O -0.582 6.582 29 C -0.072 4.072 30 H 0.251 0.749 31 H 0.377 0.623 32 H 0.008 0.992 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.413 0.587 41 H 0.228 0.772 42 H 0.415 0.585 43 H 0.417 0.583 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -18.084 -16.422 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.036 3.964 11 C -0.107 4.107 12 H 0.111 0.889 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.049 3.951 17 H 0.086 0.914 18 N -0.355 5.355 19 C 0.375 3.625 20 O -0.476 6.476 21 C -0.272 4.272 22 C -0.027 4.027 23 N -0.094 5.094 24 H 0.287 0.713 25 C -0.182 4.182 26 C 0.380 3.620 27 N -0.393 5.393 28 O -0.462 6.462 29 C -0.098 4.098 30 H 0.060 0.940 31 H 0.210 0.790 32 H 0.026 0.974 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.247 0.753 43 H 0.250 0.750 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.243 -18.789 -15.603 24.424 hybrid contribution -0.044 1.390 -0.616 1.521 sum 0.199 -17.399 -16.219 23.787 Atomic orbital electron populations 1.69798 1.06330 1.25947 1.59537 1.25464 0.96382 1.00712 1.03776 0.85151 0.78114 0.80192 0.76771 1.19576 1.21715 1.22137 1.19605 0.91276 0.85559 1.41075 0.91359 1.42470 1.05635 1.00737 1.89237 1.20736 0.93651 0.84963 0.97073 1.22373 0.96997 0.91988 0.99323 0.88852 1.22253 0.99884 0.97112 0.95803 1.22059 0.99666 0.93466 0.99795 1.22439 0.97062 0.97449 0.99317 1.21659 0.98099 0.93507 0.81835 0.91402 1.45704 1.36333 1.44867 1.08558 1.17756 0.78869 0.78067 0.87780 1.90749 1.50824 1.54307 1.51716 1.19560 1.05957 1.09283 0.92385 1.23043 0.98511 0.97645 0.83498 1.41572 1.25595 1.32093 1.10155 0.71262 1.19724 0.99884 1.04810 0.93759 1.17103 0.81651 0.80156 0.83049 1.43453 1.40960 1.49298 1.05545 1.90896 1.35412 1.41234 1.78614 1.21059 0.98076 0.97970 0.92715 0.93960 0.79023 0.97438 0.96429 0.91889 0.92704 0.90205 0.91089 0.90124 0.92203 0.74975 0.75535 0.75348 0.74978 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.44 9.99 84.03 0.84 -12.61 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.74 -36.24 5.52 -343.44 -1.90 -38.13 16 10 C 0.16 6.38 5.70 86.38 0.49 6.87 16 11 C -0.09 -2.57 2.50 -9.51 -0.02 -2.60 16 12 H 0.09 2.54 8.02 -2.38 -0.02 2.52 16 13 C -0.11 -3.22 6.20 31.67 0.20 -3.03 16 14 C -0.11 -2.47 6.80 31.32 0.21 -2.26 16 15 C -0.12 -2.86 6.53 31.31 0.20 -2.66 16 16 C 0.15 4.16 2.60 46.05 0.12 4.28 16 17 H 0.07 2.22 7.57 -2.39 -0.02 2.21 16 18 N -0.70 -16.14 5.10 -440.80 -2.25 -18.39 16 19 C 0.59 16.38 7.81 86.65 0.68 17.05 16 20 O -0.59 -22.41 16.63 -4.07 -0.07 -22.48 16 21 C -0.26 -5.67 6.13 -20.12 -0.12 -5.80 16 22 C 0.12 1.20 11.43 84.31 0.96 2.17 16 23 N -0.50 -3.55 5.91 -183.35 -1.08 -4.63 16 24 H 0.44 -1.11 8.14 -92.70 -0.75 -1.86 16 25 C -0.07 -1.20 6.99 40.02 0.28 -0.92 16 26 C 0.59 10.55 8.06 86.49 0.70 11.25 16 27 N -0.83 -5.04 8.87 -176.30 -1.56 -6.60 16 28 O -0.58 -16.59 17.69 -4.27 -0.08 -16.67 16 29 C -0.07 -1.76 10.37 22.58 0.23 -1.53 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.38 19.29 7.67 -92.71 -0.71 18.58 16 32 H 0.01 0.32 7.99 -2.39 -0.02 0.30 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.72 7.94 -2.39 -0.02 1.70 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 39 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.41 6.62 7.44 -92.71 -0.69 5.93 16 41 H 0.23 0.34 7.44 -2.91 -0.02 0.32 16 42 H 0.42 -0.81 7.91 -92.70 -0.73 -1.54 16 43 H 0.42 1.78 8.93 -92.71 -0.83 0.95 16 44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -86.17 372.27 -2.02 -88.18 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -2.63 Total: 21.49 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 5.24 Total: 6.70 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -6.51 Total: -124.85 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.14 Total: -39.15 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -86.17 -2.02 -88.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.588 kcal (2) G-P(sol) polarization free energy of solvation -86.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds