Wall clock time and date at job start Tue Mar 31 2020 12:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48503 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47299 * 300.00014 * 3 2 1 6 6 H 1.48495 * 109.47075 * 60.00174 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.43783 * 307.54183 * 11 10 9 13 13 C 1.54890 * 110.48670 * 70.22087 * 11 10 9 14 14 C 1.54888 * 102.74996 * 156.61991 * 13 11 10 15 15 C 1.54270 * 104.19756 * 322.06245 * 14 13 11 16 16 C 1.53874 * 106.59709 * 23.60720 * 15 14 13 17 17 H 1.08998 * 110.07122 * 240.69625 * 16 15 14 18 18 N 1.46499 * 110.03422 * 119.28333 * 16 15 14 19 19 C 1.34780 * 119.99469 * 87.83420 * 18 16 15 20 20 O 1.21603 * 120.00450 * 0.02562 * 19 18 16 21 21 C 1.47394 * 119.99658 * 180.02562 * 19 18 16 22 22 C 1.38210 * 126.46253 * 359.68250 * 21 19 18 23 23 N 1.34271 * 108.39360 * 179.86936 * 22 21 19 24 24 H 0.96995 * 125.38911 * 180.17107 * 23 22 21 25 25 C 1.37776 * 109.21683 * 0.40524 * 23 22 21 26 26 C 1.46808 * 125.85004 * 179.73218 * 25 23 22 27 27 N 1.34780 * 119.99919 * 0.02562 * 26 25 23 28 28 O 1.21680 * 120.00083 * 180.02562 * 26 25 23 29 29 C 1.36360 * 108.30059 * 359.74819 * 25 23 22 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 1.08998 * 110.75888 * 274.94005 * 13 11 10 35 35 H 1.09004 * 110.75395 * 38.30810 * 13 11 10 36 36 H 1.08998 * 110.49376 * 203.38070 * 14 13 11 37 37 H 1.09001 * 110.59695 * 80.79264 * 14 13 11 38 38 H 1.09001 * 110.03076 * 264.32096 * 15 14 13 39 39 H 1.09001 * 110.07650 * 142.91446 * 15 14 13 40 40 H 0.96991 * 120.00494 * 267.83457 * 18 16 15 41 41 H 1.07997 * 125.80057 * 0.02562 * 22 21 19 42 42 H 0.96998 * 119.99478 * 0.02562 * 27 26 25 43 43 H 0.96994 * 119.99735 * 180.02562 * 27 26 25 44 44 H 1.07997 * 126.48994 * 180.02562 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3433 -4.7047 0.8074 13 6 0.3391 -4.9124 -1.3679 14 6 -0.1114 -6.3935 -1.4159 15 6 1.0600 -7.1663 -0.7751 16 6 1.8074 -6.1656 0.1237 17 1 2.8377 -6.0560 -0.2146 18 7 1.7822 -6.6244 1.5147 19 6 2.7414 -7.4561 1.9673 20 8 3.6279 -7.8251 1.2212 21 6 2.7158 -7.9183 3.3667 22 6 1.7805 -7.5802 4.3264 23 7 2.1018 -8.2059 5.4701 24 1 1.6080 -8.1432 6.3026 25 6 3.2469 -8.9469 5.2754 26 6 3.9214 -9.7691 6.2875 27 7 3.4214 -9.8447 7.5368 28 8 4.9319 -10.3823 5.9984 29 6 3.6465 -8.7855 3.9817 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 -0.5226 -4.2454 -1.3939 35 1 1.0253 -4.6907 -2.1853 36 1 -0.2609 -6.7137 -2.4470 37 1 -1.0240 -6.5357 -0.8371 38 1 1.7275 -7.5426 -1.5504 39 1 0.6794 -7.9938 -0.1765 40 1 1.0754 -6.3298 2.1099 41 1 0.9335 -6.9262 4.1803 42 1 2.6157 -9.3562 7.7670 43 1 3.8673 -10.3876 8.2055 44 1 4.5104 -9.2356 3.5155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753902434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:48 Heat of formation + Delta-G solvation = -32.057498 kcal Electronic energy + Delta-G solvation = -26113.311655 eV Core-core repulsion = 22258.724085 eV Total energy + Delta-G solvation = -3854.587570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91600 -39.75355 -39.12674 -37.70287 -34.45684 -34.28004 -33.48358 -31.62897 -31.38311 -29.95201 -28.56381 -27.43240 -24.59121 -23.60280 -23.23304 -22.01842 -20.70503 -20.49735 -20.00180 -19.51735 -19.07213 -17.47483 -17.07072 -16.55863 -16.23124 -16.05664 -15.64948 -15.04991 -14.61209 -14.45010 -14.35798 -14.15011 -13.78624 -13.74466 -13.61797 -13.22382 -13.16296 -12.82211 -12.64663 -12.05894 -11.68573 -11.31670 -10.93423 -10.82054 -10.75551 -10.72478 -10.42881 -10.34625 -10.27837 -10.27617 -9.96345 -9.84263 -9.68920 -9.45908 -8.92063 -8.86198 -8.70680 -6.90260 -5.76299 -3.04076 1.01475 1.62740 2.50033 2.90461 2.92456 3.35314 3.43603 3.50052 3.51996 3.52334 4.41920 4.48792 4.56542 4.66376 4.76937 4.88834 4.96888 5.09191 5.47528 5.50361 5.58394 5.63681 5.66872 5.73056 5.83685 5.85443 5.96966 6.02875 6.10509 6.21545 6.23968 6.28078 6.33586 6.34752 6.55668 6.58998 6.66286 6.69938 6.81969 6.85914 6.95376 7.64913 7.72105 7.72528 8.38416 8.43130 9.54571 10.12527 10.47667 11.46773 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.002637 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.207837 B =10613.940076 C =11956.972379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.101 4.101 12 H 0.078 0.922 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.094 0.906 18 N -0.717 5.717 19 C 0.587 3.413 20 O -0.541 6.541 21 C -0.227 4.227 22 C 0.079 3.921 23 N -0.527 5.527 24 H 0.419 0.581 25 C -0.075 4.075 26 C 0.596 3.404 27 N -0.857 5.857 28 O -0.527 6.527 29 C -0.037 4.037 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.396 0.604 41 H 0.184 0.816 42 H 0.395 0.605 43 H 0.408 0.592 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -20.278 13.046 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.120 4.120 12 H 0.096 0.904 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.112 0.888 18 N -0.368 5.368 19 C 0.374 3.626 20 O -0.419 6.419 21 C -0.237 4.237 22 C -0.063 4.063 23 N -0.122 5.122 24 H 0.257 0.743 25 C -0.185 4.185 26 C 0.382 3.618 27 N -0.421 5.421 28 O -0.402 6.402 29 C -0.063 4.063 30 H 0.063 0.937 31 H 0.217 0.783 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.230 0.770 41 H 0.201 0.799 42 H 0.223 0.777 43 H 0.240 0.760 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.125 -20.802 12.295 24.190 hybrid contribution -0.819 1.303 1.215 1.960 sum -1.943 -19.500 13.510 23.802 Atomic orbital electron populations 1.69663 1.05069 1.25443 1.58252 1.24715 0.95523 0.97629 1.03246 0.86132 0.78874 0.84180 0.77144 1.20547 1.21891 1.21950 1.19290 0.91093 0.84194 1.42040 0.91194 1.42336 1.05790 0.99912 1.89455 1.20696 0.92951 0.85128 0.97963 1.22422 0.97843 0.93296 0.98468 0.90362 1.22454 1.00474 0.95204 0.96730 1.22384 0.97585 0.95979 1.00298 1.22547 0.97499 0.97932 0.99018 1.21694 1.01219 0.92780 0.80028 0.88798 1.45994 1.28847 1.48819 1.13093 1.17352 0.81369 0.78206 0.85657 1.90782 1.36180 1.57309 1.57607 1.19776 1.00701 1.08482 0.94729 1.22549 1.00418 0.98340 0.85015 1.41664 1.21796 1.36568 1.12182 0.74293 1.19958 0.94017 1.07374 0.97164 1.17029 0.83455 0.79953 0.81349 1.43704 1.31937 1.53718 1.12706 1.90920 1.24266 1.45161 1.79862 1.21152 0.98609 0.95880 0.90668 0.93652 0.78322 0.96067 0.96390 0.90795 0.91043 0.91902 0.91944 0.91342 0.91721 0.76991 0.79876 0.77734 0.75999 0.82300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.10 5.49 -59.91 -0.33 -18.43 16 10 C 0.16 3.19 5.54 -4.04 -0.02 3.17 16 11 C -0.10 -1.53 2.59 -88.96 -0.23 -1.76 16 12 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 13 C -0.11 -1.61 6.19 -24.74 -0.15 -1.76 16 14 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 15 C -0.13 -1.60 6.59 -25.61 -0.17 -1.77 16 16 C 0.15 2.03 2.82 -66.81 -0.19 1.84 16 17 H 0.09 1.51 7.26 -51.93 -0.38 1.13 16 18 N -0.72 -8.57 4.97 -53.81 -0.27 -8.84 16 19 C 0.59 8.13 7.81 -12.53 -0.10 8.04 16 20 O -0.54 -9.70 16.57 5.28 0.09 -9.62 16 21 C -0.23 -2.51 6.13 -105.02 -0.64 -3.15 16 22 C 0.08 0.53 11.43 -16.50 -0.19 0.34 16 23 N -0.53 -2.75 5.91 -9.30 -0.05 -2.80 16 24 H 0.42 0.46 8.14 -40.82 -0.33 0.13 16 25 C -0.07 -0.67 6.99 -82.41 -0.58 -1.25 16 26 C 0.60 5.48 8.06 -12.79 -0.10 5.38 16 27 N -0.86 -3.59 8.87 30.29 0.27 -3.32 16 28 O -0.53 -7.22 17.69 5.21 0.09 -7.13 16 29 C -0.04 -0.43 10.37 -39.10 -0.41 -0.84 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.38 9.84 7.64 -40.82 -0.31 9.53 16 32 H 0.02 0.44 8.02 -51.93 -0.42 0.03 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 40 H 0.40 3.62 7.27 -40.82 -0.30 3.32 16 41 H 0.18 0.61 7.44 -52.49 -0.39 0.22 16 42 H 0.40 0.33 7.91 -40.82 -0.32 0.01 16 43 H 0.41 1.30 8.93 -40.82 -0.36 0.94 16 44 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -37.99 371.40 -8.22 -46.21 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.12 Total: 8.78 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.20 Total: -0.65 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.34 Total: -60.59 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.18 Total: -16.75 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.99 -8.22 -46.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.155 kcal (2) G-P(sol) polarization free energy of solvation -37.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds