Wall clock time and date at job start Tue Mar 31 2020 12:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48503 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47299 * 300.00014 * 3 2 1 6 6 H 1.48495 * 109.47075 * 60.00174 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.43783 * 307.54183 * 11 10 9 13 13 C 1.54890 * 110.48670 * 70.22087 * 11 10 9 14 14 C 1.54888 * 102.74996 * 156.61991 * 13 11 10 15 15 C 1.54270 * 104.19756 * 322.06245 * 14 13 11 16 16 C 1.53874 * 106.59709 * 23.60720 * 15 14 13 17 17 H 1.08998 * 110.07122 * 240.69625 * 16 15 14 18 18 N 1.46499 * 110.03422 * 119.28333 * 16 15 14 19 19 C 1.34780 * 119.99469 * 87.83420 * 18 16 15 20 20 O 1.21603 * 120.00450 * 0.02562 * 19 18 16 21 21 C 1.47394 * 119.99658 * 180.02562 * 19 18 16 22 22 C 1.38210 * 126.46253 * 359.68250 * 21 19 18 23 23 N 1.34271 * 108.39360 * 179.86936 * 22 21 19 24 24 H 0.96995 * 125.38911 * 180.17107 * 23 22 21 25 25 C 1.37776 * 109.21683 * 0.40524 * 23 22 21 26 26 C 1.46808 * 125.85004 * 179.73218 * 25 23 22 27 27 N 1.34780 * 119.99919 * 0.02562 * 26 25 23 28 28 O 1.21680 * 120.00083 * 180.02562 * 26 25 23 29 29 C 1.36360 * 108.30059 * 359.74819 * 25 23 22 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 1.08998 * 110.75888 * 274.94005 * 13 11 10 35 35 H 1.09004 * 110.75395 * 38.30810 * 13 11 10 36 36 H 1.08998 * 110.49376 * 203.38070 * 14 13 11 37 37 H 1.09001 * 110.59695 * 80.79264 * 14 13 11 38 38 H 1.09001 * 110.03076 * 264.32096 * 15 14 13 39 39 H 1.09001 * 110.07650 * 142.91446 * 15 14 13 40 40 H 0.96991 * 120.00494 * 267.83457 * 18 16 15 41 41 H 1.07997 * 125.80057 * 0.02562 * 22 21 19 42 42 H 0.96998 * 119.99478 * 0.02562 * 27 26 25 43 43 H 0.96994 * 119.99735 * 180.02562 * 27 26 25 44 44 H 1.07997 * 126.48994 * 180.02562 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3433 -4.7047 0.8074 13 6 0.3391 -4.9124 -1.3679 14 6 -0.1114 -6.3935 -1.4159 15 6 1.0600 -7.1663 -0.7751 16 6 1.8074 -6.1656 0.1237 17 1 2.8377 -6.0560 -0.2146 18 7 1.7822 -6.6244 1.5147 19 6 2.7414 -7.4561 1.9673 20 8 3.6279 -7.8251 1.2212 21 6 2.7158 -7.9183 3.3667 22 6 1.7805 -7.5802 4.3264 23 7 2.1018 -8.2059 5.4701 24 1 1.6080 -8.1432 6.3026 25 6 3.2469 -8.9469 5.2754 26 6 3.9214 -9.7691 6.2875 27 7 3.4214 -9.8447 7.5368 28 8 4.9319 -10.3823 5.9984 29 6 3.6465 -8.7855 3.9817 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 -0.5226 -4.2454 -1.3939 35 1 1.0253 -4.6907 -2.1853 36 1 -0.2609 -6.7137 -2.4470 37 1 -1.0240 -6.5357 -0.8371 38 1 1.7275 -7.5426 -1.5504 39 1 0.6794 -7.9938 -0.1765 40 1 1.0754 -6.3298 2.1099 41 1 0.9335 -6.9262 4.1803 42 1 2.6157 -9.3562 7.7670 43 1 3.8673 -10.3876 8.2055 44 1 4.5104 -9.2356 3.5155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753902434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:47 Heat of formation + Delta-G solvation = -63.700579 kcal Electronic energy + Delta-G solvation = -26114.683802 eV Core-core repulsion = 22258.724085 eV Total energy + Delta-G solvation = -3855.959717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61773 -40.81750 -39.92696 -38.89753 -36.28746 -34.92706 -34.62964 -33.27134 -32.36028 -30.71268 -30.14934 -28.47964 -26.32900 -24.58471 -24.12327 -23.55728 -21.69810 -21.32123 -21.07272 -20.36373 -19.99153 -19.10193 -18.00453 -17.57316 -17.25366 -16.81440 -16.54934 -16.41424 -16.10023 -15.55274 -15.44634 -15.14645 -15.04790 -14.95257 -14.63871 -14.56836 -14.41611 -14.25441 -13.45716 -13.39563 -13.14248 -12.86804 -12.73577 -12.41545 -12.11475 -11.91457 -11.83383 -11.58296 -11.55187 -11.54009 -11.37825 -11.00267 -10.90652 -10.86013 -10.26718 -9.94538 -9.42531 -8.97329 -7.94376 -5.21966 0.34388 0.76787 1.47702 1.48672 1.58488 1.93213 2.15670 2.21004 2.54082 2.56705 2.57387 3.38879 3.51001 3.73859 3.83859 3.91878 3.96565 4.07748 4.17462 4.25514 4.46049 4.53799 4.60332 4.64222 4.71000 4.76407 4.80760 4.87346 5.04026 5.07651 5.18013 5.25657 5.30125 5.33790 5.38150 5.49555 5.50220 5.55411 5.70536 5.77321 6.24484 6.28822 6.43128 6.70933 7.16257 7.35978 7.38170 8.10624 8.37086 9.28916 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.002637 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.207837 B =10613.940076 C =11956.972379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.067 0.933 9 N -0.737 5.737 10 C 0.161 3.839 11 C -0.087 4.087 12 H 0.092 0.908 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.065 0.935 18 N -0.704 5.704 19 C 0.584 3.416 20 O -0.595 6.595 21 C -0.263 4.263 22 C 0.118 3.882 23 N -0.497 5.497 24 H 0.445 0.555 25 C -0.070 4.070 26 C 0.594 3.406 27 N -0.828 5.828 28 O -0.582 6.582 29 C -0.072 4.072 30 H 0.252 0.748 31 H 0.378 0.622 32 H 0.010 0.990 33 H 0.011 0.989 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.413 0.587 41 H 0.230 0.770 42 H 0.415 0.585 43 H 0.417 0.583 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 -20.317 15.118 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.085 0.915 9 N -0.380 5.380 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.110 0.890 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.163 4.163 16 C 0.048 3.952 17 H 0.083 0.917 18 N -0.355 5.355 19 C 0.374 3.626 20 O -0.477 6.477 21 C -0.272 4.272 22 C -0.026 4.026 23 N -0.094 5.094 24 H 0.288 0.712 25 C -0.182 4.182 26 C 0.380 3.620 27 N -0.392 5.392 28 O -0.462 6.462 29 C -0.099 4.099 30 H 0.061 0.939 31 H 0.210 0.790 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.251 0.749 41 H 0.246 0.754 42 H 0.247 0.753 43 H 0.250 0.750 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.390 -20.845 14.466 25.598 hybrid contribution -0.125 1.301 0.631 1.451 sum -3.515 -19.544 15.097 24.945 Atomic orbital electron populations 1.69790 1.06291 1.25988 1.59482 1.25461 0.96411 1.00701 1.03709 0.85148 0.78078 0.80164 0.76824 1.19665 1.21969 1.21707 1.19600 0.91264 0.85602 1.41186 0.91465 1.42453 1.05644 1.00690 1.89235 1.20778 0.93728 0.85178 0.96866 1.22257 0.96938 0.91892 0.99579 0.88970 1.22412 0.99634 0.97315 0.95632 1.22310 0.97796 0.93179 1.01484 1.22476 0.97415 0.97743 0.98651 1.21460 0.99645 0.92619 0.81467 0.91718 1.45802 1.28939 1.48129 1.12624 1.17777 0.80619 0.77665 0.86526 1.90749 1.38302 1.59390 1.59253 1.19562 1.02878 1.10539 0.94238 1.23052 0.99430 0.96457 0.83668 1.41569 1.20260 1.34565 1.13002 0.71240 1.19716 0.94919 1.07488 0.96049 1.17110 0.82846 0.79461 0.82564 1.43450 1.32041 1.52776 1.10975 1.90898 1.26768 1.47508 1.81009 1.21061 0.98872 0.97493 0.92468 0.93913 0.78951 0.97190 0.97108 0.91799 0.92579 0.90615 0.89979 0.91921 0.90503 0.74949 0.75383 0.75338 0.74981 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.59 13.06 21.65 0.28 -57.30 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 9 N -0.74 -36.70 5.49 -343.45 -1.89 -38.59 16 10 C 0.16 6.49 5.54 86.38 0.48 6.96 16 11 C -0.09 -2.58 2.59 -9.72 -0.03 -2.61 16 12 H 0.09 2.50 7.74 -2.38 -0.02 2.48 16 13 C -0.11 -3.16 6.19 31.89 0.20 -2.96 16 14 C -0.11 -2.32 6.83 31.67 0.22 -2.10 16 15 C -0.12 -2.86 6.59 31.32 0.21 -2.65 16 16 C 0.15 4.16 2.82 45.72 0.13 4.28 16 17 H 0.06 2.16 7.26 -2.39 -0.02 2.15 16 18 N -0.70 -15.94 4.97 -442.40 -2.20 -18.14 16 19 C 0.58 16.34 7.81 86.65 0.68 17.01 16 20 O -0.60 -22.64 16.57 -4.04 -0.07 -22.70 16 21 C -0.26 -5.63 6.13 -20.12 -0.12 -5.75 16 22 C 0.12 1.15 11.43 84.31 0.96 2.11 16 23 N -0.50 -3.33 5.91 -183.34 -1.08 -4.41 16 24 H 0.44 -1.34 8.14 -92.71 -0.75 -2.09 16 25 C -0.07 -1.18 6.99 40.01 0.28 -0.90 16 26 C 0.59 10.48 8.06 86.48 0.70 11.17 16 27 N -0.83 -4.87 8.87 -176.30 -1.56 -6.43 16 28 O -0.58 -16.59 17.69 -4.29 -0.08 -16.66 16 29 C -0.07 -1.78 10.37 22.58 0.23 -1.54 16 30 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.38 19.45 7.64 -92.71 -0.71 18.74 16 32 H 0.01 0.43 8.02 -2.39 -0.02 0.41 16 33 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.74 7.97 -2.38 -0.02 1.72 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.62 7.92 -2.39 -0.02 1.60 16 40 H 0.41 6.28 7.27 -92.72 -0.67 5.61 16 41 H 0.23 0.13 7.44 -2.91 -0.02 0.11 16 42 H 0.42 -0.93 7.91 -92.71 -0.73 -1.66 16 43 H 0.42 1.71 8.93 -92.71 -0.83 0.88 16 44 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -87.44 371.40 -1.93 -89.38 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -2.60 Total: 20.20 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 5.24 Total: 6.64 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.45 Total: -124.88 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.14 Total: -39.37 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -87.44 -1.93 -89.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.678 kcal (2) G-P(sol) polarization free energy of solvation -87.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds