Wall clock time and date at job start Tue Mar 31 2020 12:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.43777 * 305.70471 * 11 10 9 13 13 C 1.54889 * 110.48536 * 68.24374 * 11 10 9 14 14 C 1.55025 * 102.68586 * 156.51639 * 13 11 10 15 15 C 1.54265 * 104.28095 * 322.23656 * 14 13 11 16 16 C 1.53874 * 106.59720 * 23.51618 * 15 14 13 17 17 H 1.08995 * 110.02959 * 119.28959 * 16 15 14 18 18 N 1.46507 * 110.02907 * 240.71464 * 16 15 14 19 19 C 1.34772 * 120.00212 * 272.16549 * 18 16 15 20 20 O 1.21605 * 119.99841 * 0.02562 * 19 18 16 21 21 C 1.47396 * 119.99901 * 180.02562 * 19 18 16 22 22 C 1.38199 * 126.46320 * 359.68450 * 21 19 18 23 23 N 1.34268 * 108.39868 * 179.86360 * 22 21 19 24 24 H 0.96997 * 125.39552 * 180.13128 * 23 22 21 25 25 C 1.37780 * 109.21050 * 0.41152 * 23 22 21 26 26 C 1.46819 * 125.84911 * 179.71074 * 25 23 22 27 27 N 1.34774 * 119.99874 * 0.03873 * 26 25 23 28 28 O 1.21675 * 119.99714 * 180.02562 * 26 25 23 29 29 C 1.36357 * 108.30585 * 359.74384 * 25 23 22 30 30 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47239 * 300.00354 * 10 9 7 33 33 H 1.08999 * 109.47211 * 60.00448 * 10 9 7 34 34 H 1.09003 * 110.75698 * 274.93930 * 13 11 10 35 35 H 1.09003 * 110.75570 * 38.30294 * 13 11 10 36 36 H 1.09004 * 110.52313 * 203.48836 * 14 13 11 37 37 H 1.09004 * 110.36826 * 80.90250 * 14 13 11 38 38 H 1.09001 * 110.02728 * 264.22929 * 15 14 13 39 39 H 1.09001 * 110.03334 * 142.80268 * 15 14 13 40 40 H 0.97001 * 119.99449 * 92.17278 * 18 16 15 41 41 H 1.08004 * 125.80206 * 0.03005 * 22 21 19 42 42 H 0.96999 * 119.99769 * 0.02562 * 27 26 25 43 43 H 0.96994 * 120.00060 * 179.97438 * 27 26 25 44 44 H 1.07996 * 126.49790 * 179.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.3643 -4.7218 0.8295 13 6 0.3012 -4.8819 -1.3475 14 6 -0.1483 -6.3640 -1.4160 15 6 1.0390 -7.1496 -0.8221 16 6 1.8097 -6.1677 0.0778 17 1 1.8177 -6.5308 1.1054 18 7 3.1821 -6.0111 -0.4105 19 6 4.1465 -6.8545 0.0078 20 8 3.8775 -7.7458 0.7900 21 6 5.5274 -6.6965 -0.4830 22 6 5.9783 -5.7403 -1.3731 23 7 7.2941 -5.9269 -1.5649 24 1 7.8592 -5.3907 -2.1428 25 6 7.7132 -7.0044 -0.8155 26 6 9.0823 -7.5313 -0.7579 27 7 10.0594 -6.9491 -1.4811 28 8 9.3349 -8.4934 -0.0572 29 6 6.6384 -7.4981 -0.1369 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6840 -3.7141 -0.8921 33 1 2.6853 -3.7149 0.8878 34 1 -0.5607 -4.2147 -1.3346 35 1 0.9645 -4.6417 -2.1785 36 1 -0.3246 -6.6625 -2.4495 37 1 -1.0452 -6.5165 -0.8156 38 1 1.6860 -7.5096 -1.6220 39 1 0.6730 -7.9892 -0.2310 40 1 3.3966 -5.3002 -1.0347 41 1 5.3754 -4.9718 -1.8339 42 1 9.8580 -6.1818 -2.0392 43 1 10.9640 -7.2970 -1.4428 44 1 6.6365 -8.3421 0.5368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753902435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:51 Heat of formation + Delta-G solvation = -27.151800 kcal Electronic energy + Delta-G solvation = -26566.735273 eV Core-core repulsion = 22712.360430 eV Total energy + Delta-G solvation = -3854.374843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87389 -39.87285 -39.12796 -37.73569 -34.71253 -34.24389 -33.45492 -31.57976 -31.49401 -29.90670 -28.41314 -27.53118 -24.34397 -23.58332 -23.23495 -22.57471 -20.60727 -20.38513 -19.95709 -19.45833 -19.14310 -17.52712 -17.22369 -16.68670 -16.15089 -15.80550 -15.62098 -15.14967 -14.81967 -14.50954 -14.36246 -14.11672 -13.91586 -13.75754 -13.72515 -13.39753 -13.33655 -13.05506 -12.59724 -12.35549 -11.56608 -11.15117 -10.94436 -10.81798 -10.69216 -10.57939 -10.55801 -10.42486 -10.32773 -10.24188 -10.05818 -9.85394 -9.41999 -9.21709 -8.92213 -8.91623 -8.67014 -7.04379 -6.14712 -3.14453 1.06281 1.66259 2.55645 2.93975 2.96167 3.37814 3.46574 3.51888 3.54644 3.65425 4.45860 4.54363 4.57513 4.68091 4.75241 4.78896 4.98580 5.04650 5.40484 5.49055 5.52454 5.61249 5.67316 5.69582 5.73394 5.80696 5.86847 5.98658 6.04715 6.07188 6.09130 6.25146 6.26955 6.38562 6.41918 6.43058 6.64101 6.68550 6.73384 6.75680 6.90822 7.67544 7.75372 7.75480 8.39858 8.71788 9.19061 10.05378 10.20617 11.34020 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.003309 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.179035 B = 8458.972356 C =10645.144918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.045 4.045 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.741 5.741 10 C 0.172 3.828 11 C -0.110 4.110 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.151 3.849 17 H 0.090 0.910 18 N -0.716 5.716 19 C 0.587 3.413 20 O -0.545 6.545 21 C -0.229 4.229 22 C 0.081 3.919 23 N -0.526 5.526 24 H 0.420 0.580 25 C -0.076 4.076 26 C 0.597 3.403 27 N -0.857 5.857 28 O -0.528 6.528 29 C -0.037 4.037 30 H 0.256 0.744 31 H 0.367 0.633 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.184 0.816 42 H 0.396 0.604 43 H 0.408 0.592 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.710 -13.128 -8.313 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.463 4.463 8 H 0.081 0.919 9 N -0.387 5.387 10 C 0.044 3.956 11 C -0.129 4.129 12 H 0.104 0.896 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.045 3.955 17 H 0.108 0.892 18 N -0.369 5.369 19 C 0.375 3.625 20 O -0.423 6.423 21 C -0.238 4.238 22 C -0.061 4.061 23 N -0.121 5.121 24 H 0.258 0.742 25 C -0.186 4.186 26 C 0.383 3.617 27 N -0.420 5.420 28 O -0.403 6.403 29 C -0.063 4.063 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.201 0.799 42 H 0.223 0.777 43 H 0.240 0.760 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.741 -12.699 -7.308 20.088 hybrid contribution 0.574 -0.641 -0.903 1.247 sum 14.315 -13.340 -8.211 21.220 Atomic orbital electron populations 1.70843 1.06050 1.28497 1.53509 1.25755 0.97063 1.00966 1.00459 0.83204 0.73783 0.75408 0.76283 1.22305 1.21381 1.22267 1.20028 0.91940 0.85849 1.48528 0.91867 1.42358 1.04907 1.00824 1.90590 1.20493 0.92927 0.84815 0.97397 1.22500 0.97947 0.93568 0.98867 0.89589 1.22522 1.00149 0.95461 0.96858 1.22410 0.97764 0.95654 1.00462 1.22575 0.97138 0.98073 0.99192 1.21568 0.80133 0.95149 0.98603 0.89202 1.46088 1.08752 1.33652 1.48378 1.17358 0.83455 0.81363 0.80310 1.90765 1.82745 1.33616 1.35212 1.19747 0.94873 1.02253 1.06973 1.22589 0.84013 1.00165 0.99290 1.41671 1.09065 1.25188 1.36202 0.74230 1.19956 0.95093 0.96786 1.06750 1.17023 0.83105 0.82427 0.79163 1.43703 1.12649 1.35987 1.49708 1.90912 1.82225 1.26720 1.40482 1.21129 0.88960 0.98741 0.97474 0.93305 0.79939 0.96860 0.96061 0.91141 0.91489 0.91896 0.91671 0.91454 0.91382 0.76273 0.79869 0.77689 0.76016 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.26 29.92 -169.99 -5.09 20.17 16 4 H -0.30 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.33 -9.05 9.99 -15.06 -0.15 -9.21 16 8 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.74 -17.79 5.46 -59.91 -0.33 -18.11 16 10 C 0.17 3.21 4.79 -4.04 -0.02 3.19 16 11 C -0.11 -1.67 2.86 -88.96 -0.25 -1.92 16 12 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.11 -1.57 6.11 -24.67 -0.15 -1.72 16 14 C -0.13 -1.46 6.83 -25.00 -0.17 -1.63 16 15 C -0.13 -1.60 6.59 -25.61 -0.17 -1.77 16 16 C 0.15 2.08 3.12 -66.81 -0.21 1.87 16 17 H 0.09 1.37 7.56 -51.93 -0.39 0.98 16 18 N -0.72 -9.31 4.33 -53.81 -0.23 -9.55 16 19 C 0.59 8.54 7.81 -12.53 -0.10 8.44 16 20 O -0.55 -9.87 16.57 5.27 0.09 -9.78 16 21 C -0.23 -2.75 6.13 -105.02 -0.64 -3.39 16 22 C 0.08 0.67 11.43 -16.50 -0.19 0.48 16 23 N -0.53 -3.36 5.91 -9.30 -0.05 -3.41 16 24 H 0.42 0.98 8.14 -40.82 -0.33 0.65 16 25 C -0.08 -0.74 6.99 -82.40 -0.58 -1.31 16 26 C 0.60 5.86 8.06 -12.79 -0.10 5.75 16 27 N -0.86 -4.16 8.87 30.29 0.27 -3.89 16 28 O -0.53 -7.48 17.69 5.21 0.09 -7.39 16 29 C -0.04 -0.46 10.37 -39.09 -0.41 -0.86 16 30 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 31 H 0.37 9.07 6.41 -40.82 -0.26 8.81 16 32 H 0.01 0.24 6.34 -51.93 -0.33 -0.09 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.40 4.61 5.43 -40.82 -0.22 4.39 16 41 H 0.18 1.03 7.44 -52.48 -0.39 0.64 16 42 H 0.40 0.64 7.91 -40.82 -0.32 0.32 16 43 H 0.41 1.54 8.93 -40.82 -0.36 1.17 16 44 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -37.71 365.95 -8.10 -45.81 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.88 Total: 11.89 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.23 Total: -3.44 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.41 Total: -62.77 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.18 Total: -17.17 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.09 Total: 20.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.71 -8.10 -45.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.656 kcal (2) G-P(sol) polarization free energy of solvation -37.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds