Wall clock time and date at job start Tue Mar 31 2020 12:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.43777 * 305.70471 * 11 10 9 13 13 C 1.54889 * 110.48536 * 68.24374 * 11 10 9 14 14 C 1.55025 * 102.68586 * 156.51639 * 13 11 10 15 15 C 1.54265 * 104.28095 * 322.23656 * 14 13 11 16 16 C 1.53874 * 106.59720 * 23.51618 * 15 14 13 17 17 H 1.08995 * 110.02959 * 119.28959 * 16 15 14 18 18 N 1.46507 * 110.02907 * 240.71464 * 16 15 14 19 19 C 1.34772 * 120.00212 * 272.16549 * 18 16 15 20 20 O 1.21605 * 119.99841 * 0.02562 * 19 18 16 21 21 C 1.47396 * 119.99901 * 180.02562 * 19 18 16 22 22 C 1.38199 * 126.46320 * 359.68450 * 21 19 18 23 23 N 1.34268 * 108.39868 * 179.86360 * 22 21 19 24 24 H 0.96997 * 125.39552 * 180.13128 * 23 22 21 25 25 C 1.37780 * 109.21050 * 0.41152 * 23 22 21 26 26 C 1.46819 * 125.84911 * 179.71074 * 25 23 22 27 27 N 1.34774 * 119.99874 * 0.03873 * 26 25 23 28 28 O 1.21675 * 119.99714 * 180.02562 * 26 25 23 29 29 C 1.36357 * 108.30585 * 359.74384 * 25 23 22 30 30 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47239 * 300.00354 * 10 9 7 33 33 H 1.08999 * 109.47211 * 60.00448 * 10 9 7 34 34 H 1.09003 * 110.75698 * 274.93930 * 13 11 10 35 35 H 1.09003 * 110.75570 * 38.30294 * 13 11 10 36 36 H 1.09004 * 110.52313 * 203.48836 * 14 13 11 37 37 H 1.09004 * 110.36826 * 80.90250 * 14 13 11 38 38 H 1.09001 * 110.02728 * 264.22929 * 15 14 13 39 39 H 1.09001 * 110.03334 * 142.80268 * 15 14 13 40 40 H 0.97001 * 119.99449 * 92.17278 * 18 16 15 41 41 H 1.08004 * 125.80206 * 0.03005 * 22 21 19 42 42 H 0.96999 * 119.99769 * 0.02562 * 27 26 25 43 43 H 0.96994 * 120.00060 * 179.97438 * 27 26 25 44 44 H 1.07996 * 126.49790 * 179.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.3643 -4.7218 0.8295 13 6 0.3012 -4.8819 -1.3475 14 6 -0.1483 -6.3640 -1.4160 15 6 1.0390 -7.1496 -0.8221 16 6 1.8097 -6.1677 0.0778 17 1 1.8177 -6.5308 1.1054 18 7 3.1821 -6.0111 -0.4105 19 6 4.1465 -6.8545 0.0078 20 8 3.8775 -7.7458 0.7900 21 6 5.5274 -6.6965 -0.4830 22 6 5.9783 -5.7403 -1.3731 23 7 7.2941 -5.9269 -1.5649 24 1 7.8592 -5.3907 -2.1428 25 6 7.7132 -7.0044 -0.8155 26 6 9.0823 -7.5313 -0.7579 27 7 10.0594 -6.9491 -1.4811 28 8 9.3349 -8.4934 -0.0572 29 6 6.6384 -7.4981 -0.1369 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6840 -3.7141 -0.8921 33 1 2.6853 -3.7149 0.8878 34 1 -0.5607 -4.2147 -1.3346 35 1 0.9645 -4.6417 -2.1785 36 1 -0.3246 -6.6625 -2.4495 37 1 -1.0452 -6.5165 -0.8156 38 1 1.6860 -7.5096 -1.6220 39 1 0.6730 -7.9892 -0.2310 40 1 3.3966 -5.3002 -1.0347 41 1 5.3754 -4.9718 -1.8339 42 1 9.8580 -6.1818 -2.0392 43 1 10.9640 -7.2970 -1.4428 44 1 6.6365 -8.3421 0.5368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753902435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:50 Heat of formation + Delta-G solvation = -57.663866 kcal Electronic energy + Delta-G solvation = -26568.058375 eV Core-core repulsion = 22712.360430 eV Total energy + Delta-G solvation = -3855.697946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65851 -40.99439 -39.96496 -38.94709 -36.54631 -34.94077 -34.57964 -33.28680 -32.38848 -30.73696 -29.97101 -28.58694 -26.07476 -24.56025 -24.22653 -24.10561 -21.46342 -21.37394 -20.95135 -20.55144 -20.04951 -19.30001 -18.04476 -17.71207 -17.16862 -16.84270 -16.53517 -16.34345 -16.06357 -15.75645 -15.61593 -15.43477 -15.15384 -14.96231 -14.80536 -14.61918 -14.53344 -14.31639 -13.61749 -13.45085 -12.78384 -12.78272 -12.59613 -12.17519 -12.00550 -11.87420 -11.80692 -11.68650 -11.56254 -11.48990 -11.17599 -11.03726 -10.87513 -10.87498 -10.30342 -9.99769 -9.46656 -9.06236 -8.34899 -5.28905 0.31332 0.72468 1.61247 1.71665 1.85292 1.89704 2.13191 2.17173 2.51640 2.52622 2.74483 3.39899 3.45323 3.66565 3.80349 3.83990 3.88781 4.02552 4.06425 4.18933 4.36281 4.45512 4.52558 4.53650 4.63840 4.73145 4.76750 4.82544 4.85517 5.01085 5.09890 5.21502 5.23370 5.30025 5.33979 5.45554 5.47566 5.60319 5.64018 5.75886 6.20971 6.39543 6.54256 6.62781 7.13905 7.14208 7.31085 8.04660 8.16023 9.17454 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.003309 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.179035 B = 8458.972356 C =10645.144918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.105 4.105 3 Si 1.128 2.872 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.330 4.330 8 H 0.070 0.930 9 N -0.754 5.754 10 C 0.173 3.827 11 C -0.101 4.101 12 H 0.074 0.926 13 C -0.108 4.108 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.155 3.845 17 H 0.071 0.929 18 N -0.706 5.706 19 C 0.586 3.414 20 O -0.592 6.592 21 C -0.262 4.262 22 C 0.113 3.887 23 N -0.497 5.497 24 H 0.444 0.556 25 C -0.069 4.069 26 C 0.595 3.405 27 N -0.828 5.828 28 O -0.580 6.580 29 C -0.070 4.070 30 H 0.245 0.755 31 H 0.360 0.640 32 H 0.037 0.963 33 H 0.007 0.993 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.409 0.591 41 H 0.220 0.780 42 H 0.415 0.585 43 H 0.418 0.582 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.511 -12.090 -10.705 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.296 4.296 3 Si 0.953 3.047 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.461 4.461 8 H 0.088 0.912 9 N -0.398 5.398 10 C 0.046 3.954 11 C -0.121 4.121 12 H 0.092 0.908 13 C -0.146 4.146 14 C -0.151 4.151 15 C -0.162 4.162 16 C 0.049 3.951 17 H 0.089 0.911 18 N -0.359 5.359 19 C 0.376 3.624 20 O -0.474 6.474 21 C -0.271 4.271 22 C -0.032 4.032 23 N -0.094 5.094 24 H 0.287 0.713 25 C -0.180 4.180 26 C 0.381 3.619 27 N -0.392 5.392 28 O -0.460 6.460 29 C -0.096 4.096 30 H 0.055 0.945 31 H 0.192 0.808 32 H 0.055 0.945 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.248 0.752 41 H 0.236 0.764 42 H 0.246 0.754 43 H 0.251 0.749 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.623 -11.637 -9.776 21.796 hybrid contribution 0.088 -0.991 -0.165 1.008 sum 15.711 -12.628 -9.941 22.475 Atomic orbital electron populations 1.70957 1.07292 1.27981 1.56429 1.27140 0.97099 1.04630 1.00774 0.82617 0.73806 0.71663 0.76581 1.21826 1.22224 1.19167 1.20415 0.92474 0.86962 1.46295 0.91180 1.42572 1.04844 1.01867 1.90526 1.20623 0.93394 0.83900 0.97443 1.22363 0.97284 0.92906 0.99518 0.90788 1.22467 0.99432 0.96888 0.95822 1.22348 0.97521 0.93532 1.01726 1.22507 0.97165 0.97641 0.98929 1.21450 0.80740 0.94547 0.98318 0.91109 1.45948 1.08197 1.33589 1.48144 1.17735 0.84507 0.80652 0.79544 1.90734 1.83585 1.35619 1.37422 1.19573 0.93469 1.04479 1.09570 1.22949 0.84469 0.98845 0.96928 1.41567 1.08800 1.23903 1.35090 0.71286 1.19767 0.94525 0.97247 1.06463 1.17069 0.83713 0.81971 0.79110 1.43454 1.12081 1.35643 1.48070 1.90893 1.82966 1.29160 1.42974 1.21054 0.90662 0.99184 0.98716 0.94480 0.80750 0.94544 0.97472 0.92620 0.91127 0.89975 0.91117 0.90880 0.91161 0.75191 0.76376 0.75375 0.74922 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.76 13.70 21.65 0.30 -59.46 16 2 C -0.11 -5.90 5.50 84.86 0.47 -5.43 16 3 Si 1.13 49.85 29.92 68.60 2.05 51.90 16 4 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.33 -17.64 9.99 84.03 0.84 -16.80 16 8 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 9 N -0.75 -35.88 5.46 -343.46 -1.88 -37.76 16 10 C 0.17 6.28 4.79 86.38 0.41 6.70 16 11 C -0.10 -3.04 2.86 -9.72 -0.03 -3.06 16 12 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 13 C -0.11 -2.89 6.11 31.93 0.20 -2.69 16 14 C -0.11 -2.42 6.83 31.72 0.22 -2.20 16 15 C -0.12 -2.85 6.59 31.32 0.21 -2.64 16 16 C 0.16 4.21 3.12 45.71 0.14 4.36 16 17 H 0.07 2.22 7.56 -2.39 -0.02 2.20 16 18 N -0.71 -17.61 4.33 -442.40 -1.92 -19.53 16 19 C 0.59 17.09 7.81 86.66 0.68 17.77 16 20 O -0.59 -22.39 16.57 -4.05 -0.07 -22.46 16 21 C -0.26 -6.10 6.13 -20.12 -0.12 -6.22 16 22 C 0.11 1.47 11.43 84.31 0.96 2.44 16 23 N -0.50 -4.56 5.91 -183.34 -1.08 -5.64 16 24 H 0.44 -0.15 8.14 -92.71 -0.75 -0.90 16 25 C -0.07 -1.24 6.99 40.02 0.28 -0.96 16 26 C 0.60 11.03 8.06 86.49 0.70 11.72 16 27 N -0.83 -5.78 8.87 -176.30 -1.56 -7.34 16 28 O -0.58 -16.79 17.69 -4.27 -0.08 -16.86 16 29 C -0.07 -1.78 10.37 22.59 0.23 -1.54 16 30 H 0.24 14.87 6.77 -92.71 -0.63 14.25 16 31 H 0.36 18.04 6.41 -92.71 -0.59 17.44 16 32 H 0.04 1.18 6.34 -2.39 -0.02 1.17 16 33 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.83 8.00 -2.39 -0.02 1.81 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.07 1.62 7.92 -2.39 -0.02 1.60 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.41 8.41 5.43 -92.71 -0.50 7.91 16 41 H 0.22 1.32 7.44 -2.91 -0.02 1.30 16 42 H 0.42 -0.32 7.91 -92.71 -0.73 -1.05 16 43 H 0.42 2.08 8.93 -92.71 -0.83 1.25 16 44 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -85.39 365.95 -1.23 -86.62 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -2.18 Total: 29.10 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.18 Total: 1.44 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -6.14 Total: -129.74 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.14 Total: -39.32 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -85.39 -1.23 -86.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.956 kcal (2) G-P(sol) polarization free energy of solvation -85.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds