Wall clock time and date at job start Tue Mar 31 2020 12:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99877 * 2 1 4 4 H 1.48507 * 109.47063 * 270.00407 * 3 2 1 5 5 H 1.48499 * 109.46963 * 29.99917 * 3 2 1 6 6 H 1.48497 * 109.47106 * 150.00270 * 3 2 1 7 7 C 1.38806 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00071 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00117 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00081 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47104 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.05117 * 53.58451 * 11 10 9 13 13 C 1.54259 * 110.03307 * 292.16636 * 11 10 9 14 14 C 1.54890 * 104.19898 * 217.10397 * 13 11 10 15 15 C 1.54886 * 102.74558 * 37.94293 * 14 13 11 16 16 C 1.53877 * 110.03036 * 174.99847 * 11 10 9 17 17 H 1.08996 * 110.06999 * 238.58971 * 16 11 10 18 18 N 1.46496 * 110.03179 * 0.02562 * 16 11 10 19 19 C 1.34777 * 119.99613 * 203.61542 * 18 16 11 20 20 O 1.21610 * 120.00238 * 0.02562 * 19 18 16 21 21 C 1.47396 * 119.99916 * 180.02562 * 19 18 16 22 22 C 1.38204 * 126.46280 * 0.02670 * 21 19 18 23 23 N 1.34259 * 108.39753 * 180.02562 * 22 21 19 24 24 H 0.97000 * 125.39266 * 179.97438 * 23 22 21 25 25 C 1.37779 * 109.21582 * 359.97438 * 23 22 21 26 26 C 1.46811 * 125.84934 * 179.97438 * 25 23 22 27 27 N 1.34777 * 119.99951 * 0.02908 * 26 25 23 28 28 O 1.21680 * 120.00413 * 180.02562 * 26 25 23 29 29 C 1.36352 * 108.30024 * 359.72591 * 25 23 22 30 30 H 0.96999 * 120.00026 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99783 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47075 * 59.99923 * 10 9 7 33 33 H 1.08998 * 109.47556 * 299.99696 * 10 9 7 34 34 H 1.09003 * 110.48398 * 98.42258 * 13 11 10 35 35 H 1.09002 * 110.48860 * 335.78756 * 13 11 10 36 36 H 1.08997 * 110.75345 * 279.63164 * 14 13 11 37 37 H 1.08999 * 110.75727 * 156.25881 * 14 13 11 38 38 H 1.09007 * 110.48757 * 203.38576 * 15 14 13 39 39 H 1.08998 * 110.59940 * 80.79158 * 15 14 13 40 40 H 0.96996 * 120.00516 * 23.62527 * 18 16 11 41 41 H 1.07999 * 125.80422 * 359.97438 * 22 21 19 42 42 H 0.96998 * 120.00528 * 359.97438 * 27 26 25 43 43 H 0.97000 * 120.00142 * 180.02562 * 27 26 25 44 44 H 1.08001 * 126.49290 * 180.29811 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8734 -1.5250 0.8211 13 6 6.0350 -1.5576 -1.3451 14 6 7.4259 -2.1729 -1.6383 15 6 7.2641 -3.6329 -1.1470 16 6 6.3979 -3.5108 0.1237 17 1 7.0341 -3.4857 1.0083 18 7 5.4673 -4.6391 0.2065 19 6 5.8578 -5.7938 0.7816 20 8 6.9825 -5.8988 1.2321 21 6 4.9217 -6.9293 0.8644 22 6 3.6208 -6.9571 0.3986 23 7 3.1019 -8.1668 0.6626 24 1 2.2019 -8.4527 0.4408 25 6 4.0501 -8.9380 1.2985 26 6 3.8692 -10.3225 1.7523 27 7 2.6913 -10.9475 1.5560 28 8 4.7826 -10.9058 2.3055 29 6 5.1872 -8.1970 1.4293 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.8485 -3.0426 -0.8908 33 1 3.8493 -3.0422 0.8891 34 1 6.1096 -0.4744 -1.2490 35 1 5.3269 -1.8240 -2.1298 36 1 8.2027 -1.6588 -1.0725 37 1 7.6427 -2.1465 -2.7062 38 1 8.2358 -4.0642 -0.9062 39 1 6.7555 -4.2364 -1.8988 40 1 4.5702 -4.5553 -0.1527 41 1 3.1084 -6.1436 -0.0934 42 1 1.9630 -10.4825 1.1153 43 1 2.5716 -11.8621 1.8561 44 1 6.1142 -8.5174 1.8815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753902436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:54 Heat of formation + Delta-G solvation = -20.783409 kcal Electronic energy + Delta-G solvation = -26573.218138 eV Core-core repulsion = 22719.119449 eV Total energy + Delta-G solvation = -3854.098689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83508 -39.89051 -39.10225 -37.78683 -34.58065 -34.20458 -33.58398 -31.61249 -31.54704 -29.89321 -29.02846 -27.44772 -24.77227 -23.55327 -23.20163 -22.18103 -20.62752 -20.52391 -19.86271 -19.34500 -19.14095 -17.68039 -17.30034 -16.68269 -16.13392 -15.70969 -15.57967 -15.23940 -14.81237 -14.49540 -14.33930 -14.15615 -13.93895 -13.80015 -13.69531 -13.42871 -13.16614 -12.73343 -12.56477 -12.26689 -11.81219 -11.62303 -11.00791 -10.96709 -10.90062 -10.65701 -10.52530 -10.52113 -10.37198 -10.20398 -10.08652 -9.85134 -9.66907 -9.38510 -9.01022 -8.86928 -8.62995 -7.31237 -5.85114 -3.20568 1.10643 1.69180 2.60715 2.97538 2.99827 3.32630 3.35743 3.39006 3.41467 3.56456 4.49589 4.52686 4.57901 4.63576 4.75671 4.78176 4.99137 5.05535 5.31093 5.43820 5.48905 5.55094 5.65378 5.68450 5.71419 5.76858 5.79373 5.87493 6.01374 6.09791 6.11252 6.24305 6.29969 6.31102 6.41641 6.42354 6.51617 6.63721 6.72423 6.78530 6.95111 7.68061 7.79088 7.89148 8.33882 8.40812 9.12994 9.85869 10.05691 11.33137 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.003181 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.414613 B = 8799.885948 C =10654.957226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.161 3.839 11 C -0.112 4.112 12 H 0.082 0.918 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.152 3.848 17 H 0.090 0.910 18 N -0.720 5.720 19 C 0.588 3.412 20 O -0.546 6.546 21 C -0.231 4.231 22 C 0.084 3.916 23 N -0.525 5.525 24 H 0.420 0.580 25 C -0.076 4.076 26 C 0.597 3.403 27 N -0.857 5.857 28 O -0.529 6.529 29 C -0.037 4.037 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.025 0.975 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.404 0.596 41 H 0.186 0.814 42 H 0.396 0.604 43 H 0.408 0.592 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 -16.422 -2.645 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.033 3.967 11 C -0.132 4.132 12 H 0.100 0.900 13 C -0.153 4.153 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.047 3.953 17 H 0.108 0.892 18 N -0.374 5.374 19 C 0.376 3.624 20 O -0.425 6.425 21 C -0.241 4.241 22 C -0.059 4.059 23 N -0.121 5.121 24 H 0.258 0.742 25 C -0.186 4.186 26 C 0.383 3.617 27 N -0.420 5.420 28 O -0.404 6.404 29 C -0.063 4.063 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.242 0.758 41 H 0.203 0.797 42 H 0.224 0.776 43 H 0.240 0.760 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.202 -16.922 -1.970 18.908 hybrid contribution -1.011 1.120 -0.399 1.561 sum 7.191 -15.803 -2.369 17.523 Atomic orbital electron populations 1.69693 1.05129 1.25934 1.57394 1.24663 0.95227 0.97278 1.01862 0.86553 0.79290 0.84916 0.77818 1.21016 1.21738 1.20249 1.19009 0.80611 0.94636 1.43334 0.89328 1.42680 1.03958 1.02131 1.91019 1.20675 0.88202 0.89733 0.98047 1.22269 0.96526 0.95499 0.98886 0.89995 1.22405 0.96178 0.99892 0.96852 1.22479 0.97610 0.95392 1.00730 1.22770 1.00039 0.97109 0.97114 1.21587 0.90374 0.84464 0.98891 0.89179 1.46214 1.17583 1.12746 1.60808 1.17373 0.86262 0.81638 0.77169 1.90760 1.20557 1.82727 1.48421 1.19731 0.94850 0.96729 1.12752 1.22633 0.94332 0.88414 1.00482 1.41683 1.13829 1.11599 1.44940 0.74163 1.19949 0.92016 0.93841 1.12841 1.17025 0.82487 0.84143 0.78043 1.43708 1.14955 1.18935 1.64435 1.90910 1.41007 1.65916 1.42617 1.21114 0.97169 0.90958 0.97072 0.93014 0.80516 0.95717 0.95202 0.91632 0.90762 0.91546 0.91579 0.91341 0.91218 0.75800 0.79721 0.77646 0.76035 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.97 55.49 0.78 -27.50 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.40 27.73 -169.99 -4.71 16.68 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 7 C -0.25 -6.56 10.47 -15.06 -0.16 -6.72 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 N -0.75 -16.61 5.25 -59.91 -0.31 -16.92 16 10 C 0.16 2.75 4.18 -4.04 -0.02 2.73 16 11 C -0.11 -1.60 2.96 -89.50 -0.26 -1.87 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.12 -1.53 6.08 -25.08 -0.15 -1.68 16 14 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 15 C -0.13 -1.56 6.52 -25.07 -0.16 -1.72 16 16 C 0.15 2.00 3.21 -66.81 -0.21 1.79 16 17 H 0.09 1.29 7.61 -51.93 -0.39 0.90 16 18 N -0.72 -9.17 4.41 -53.80 -0.24 -9.40 16 19 C 0.59 8.41 7.80 -12.53 -0.10 8.31 16 20 O -0.55 -9.68 16.60 5.27 0.09 -9.59 16 21 C -0.23 -2.78 6.13 -105.02 -0.64 -3.42 16 22 C 0.08 0.71 11.43 -16.50 -0.19 0.52 16 23 N -0.53 -3.52 5.91 -9.31 -0.05 -3.58 16 24 H 0.42 1.18 8.14 -40.82 -0.33 0.84 16 25 C -0.08 -0.75 6.99 -82.41 -0.58 -1.33 16 26 C 0.60 5.96 8.06 -12.79 -0.10 5.85 16 27 N -0.86 -4.36 8.87 30.29 0.27 -4.10 16 28 O -0.53 -7.54 17.70 5.21 0.09 -7.45 16 29 C -0.04 -0.46 10.37 -39.10 -0.41 -0.86 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.36 7.94 5.41 -40.82 -0.22 7.72 16 32 H 0.03 0.41 7.12 -51.93 -0.37 0.04 16 33 H 0.03 0.53 7.40 -51.93 -0.38 0.14 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.04 7.76 -51.93 -0.40 0.64 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.40 4.63 4.75 -40.82 -0.19 4.43 16 41 H 0.19 1.14 7.44 -52.49 -0.39 0.75 16 42 H 0.40 0.77 7.91 -40.82 -0.32 0.45 16 43 H 0.41 1.63 8.93 -40.82 -0.36 1.26 16 44 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -36.93 363.44 -7.79 -44.73 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.92 Total: 11.52 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.25 Total: 0.13 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.44 Total: -61.49 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.18 Total: -17.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.93 -7.79 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.943 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds