Wall clock time and date at job start Tue Mar 31 2020 12:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99877 * 2 1 4 4 H 1.48507 * 109.47063 * 270.00407 * 3 2 1 5 5 H 1.48499 * 109.46963 * 29.99917 * 3 2 1 6 6 H 1.48497 * 109.47106 * 150.00270 * 3 2 1 7 7 C 1.38806 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00071 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00117 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00081 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47104 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.05117 * 53.58451 * 11 10 9 13 13 C 1.54259 * 110.03307 * 292.16636 * 11 10 9 14 14 C 1.54890 * 104.19898 * 217.10397 * 13 11 10 15 15 C 1.54886 * 102.74558 * 37.94293 * 14 13 11 16 16 C 1.53877 * 110.03036 * 174.99847 * 11 10 9 17 17 H 1.08996 * 110.06999 * 238.58971 * 16 11 10 18 18 N 1.46496 * 110.03179 * 0.02562 * 16 11 10 19 19 C 1.34777 * 119.99613 * 203.61542 * 18 16 11 20 20 O 1.21610 * 120.00238 * 0.02562 * 19 18 16 21 21 C 1.47396 * 119.99916 * 180.02562 * 19 18 16 22 22 C 1.38204 * 126.46280 * 0.02670 * 21 19 18 23 23 N 1.34259 * 108.39753 * 180.02562 * 22 21 19 24 24 H 0.97000 * 125.39266 * 179.97438 * 23 22 21 25 25 C 1.37779 * 109.21582 * 359.97438 * 23 22 21 26 26 C 1.46811 * 125.84934 * 179.97438 * 25 23 22 27 27 N 1.34777 * 119.99951 * 0.02908 * 26 25 23 28 28 O 1.21680 * 120.00413 * 180.02562 * 26 25 23 29 29 C 1.36352 * 108.30024 * 359.72591 * 25 23 22 30 30 H 0.96999 * 120.00026 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99783 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47075 * 59.99923 * 10 9 7 33 33 H 1.08998 * 109.47556 * 299.99696 * 10 9 7 34 34 H 1.09003 * 110.48398 * 98.42258 * 13 11 10 35 35 H 1.09002 * 110.48860 * 335.78756 * 13 11 10 36 36 H 1.08997 * 110.75345 * 279.63164 * 14 13 11 37 37 H 1.08999 * 110.75727 * 156.25881 * 14 13 11 38 38 H 1.09007 * 110.48757 * 203.38576 * 15 14 13 39 39 H 1.08998 * 110.59940 * 80.79158 * 15 14 13 40 40 H 0.96996 * 120.00516 * 23.62527 * 18 16 11 41 41 H 1.07999 * 125.80422 * 359.97438 * 22 21 19 42 42 H 0.96998 * 120.00528 * 359.97438 * 27 26 25 43 43 H 0.97000 * 120.00142 * 180.02562 * 27 26 25 44 44 H 1.08001 * 126.49290 * 180.29811 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8734 -1.5250 0.8211 13 6 6.0350 -1.5576 -1.3451 14 6 7.4259 -2.1729 -1.6383 15 6 7.2641 -3.6329 -1.1470 16 6 6.3979 -3.5108 0.1237 17 1 7.0341 -3.4857 1.0083 18 7 5.4673 -4.6391 0.2065 19 6 5.8578 -5.7938 0.7816 20 8 6.9825 -5.8988 1.2321 21 6 4.9217 -6.9293 0.8644 22 6 3.6208 -6.9571 0.3986 23 7 3.1019 -8.1668 0.6626 24 1 2.2019 -8.4527 0.4408 25 6 4.0501 -8.9380 1.2985 26 6 3.8692 -10.3225 1.7523 27 7 2.6913 -10.9475 1.5560 28 8 4.7826 -10.9058 2.3055 29 6 5.1872 -8.1970 1.4293 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.8485 -3.0426 -0.8908 33 1 3.8493 -3.0422 0.8891 34 1 6.1096 -0.4744 -1.2490 35 1 5.3269 -1.8240 -2.1298 36 1 8.2027 -1.6588 -1.0725 37 1 7.6427 -2.1465 -2.7062 38 1 8.2358 -4.0642 -0.9062 39 1 6.7555 -4.2364 -1.8988 40 1 4.5702 -4.5553 -0.1527 41 1 3.1084 -6.1436 -0.0934 42 1 1.9630 -10.4825 1.1153 43 1 2.5716 -11.8621 1.8561 44 1 6.1142 -8.5174 1.8815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753902436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:53 Heat of formation + Delta-G solvation = -50.842592 kcal Electronic energy + Delta-G solvation = -26574.521602 eV Core-core repulsion = 22719.119449 eV Total energy + Delta-G solvation = -3855.402153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.63895 -40.97176 -39.94992 -38.94503 -36.30528 -34.92771 -34.65864 -33.50767 -32.37159 -30.76091 -30.45262 -28.44383 -26.31441 -24.42537 -24.10392 -23.85680 -21.59309 -21.34256 -20.85150 -20.51922 -20.07577 -19.40066 -18.04617 -17.67556 -17.02935 -16.70948 -16.49255 -16.43012 -16.23814 -15.82225 -15.46959 -15.33074 -15.07040 -14.85264 -14.66919 -14.61241 -14.44526 -14.26530 -13.59920 -13.43597 -13.38104 -12.87709 -12.75932 -12.30480 -12.05037 -11.90567 -11.77684 -11.67939 -11.54737 -11.52595 -11.41457 -11.01176 -10.92120 -10.86178 -10.27510 -9.95066 -9.44710 -9.23648 -7.98493 -5.30348 0.33083 0.74735 1.42084 1.43566 1.50838 1.91833 2.14906 2.20930 2.52359 2.53946 2.54934 3.34289 3.40630 3.72282 3.83210 3.84970 3.90277 4.03686 4.05187 4.20998 4.41178 4.53067 4.54897 4.57252 4.67180 4.76058 4.80813 4.85445 4.96421 5.04510 5.13679 5.26204 5.28505 5.32635 5.38483 5.50124 5.53185 5.63943 5.77192 5.81492 6.21859 6.25408 6.40447 6.64723 7.12952 7.15207 7.33633 7.90056 8.07460 9.22536 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.003181 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.414613 B = 8799.885948 C =10654.957226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.302 1.302 6 H -0.254 1.254 7 C -0.226 4.226 8 H 0.068 0.932 9 N -0.756 5.756 10 C 0.159 3.841 11 C -0.104 4.104 12 H 0.078 0.922 13 C -0.115 4.115 14 C -0.114 4.114 15 C -0.126 4.126 16 C 0.154 3.846 17 H 0.076 0.924 18 N -0.711 5.711 19 C 0.586 3.414 20 O -0.590 6.590 21 C -0.261 4.261 22 C 0.110 3.890 23 N -0.498 5.498 24 H 0.443 0.557 25 C -0.070 4.070 26 C 0.596 3.404 27 N -0.829 5.829 28 O -0.580 6.580 29 C -0.068 4.068 30 H 0.256 0.744 31 H 0.365 0.635 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.411 0.589 41 H 0.217 0.783 42 H 0.415 0.585 43 H 0.418 0.582 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 -16.375 -3.926 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.229 1.229 6 H -0.178 1.178 7 C -0.357 4.357 8 H 0.086 0.914 9 N -0.401 5.401 10 C 0.033 3.967 11 C -0.124 4.124 12 H 0.096 0.904 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.049 3.951 17 H 0.094 0.906 18 N -0.364 5.364 19 C 0.376 3.624 20 O -0.472 6.472 21 C -0.270 4.270 22 C -0.034 4.034 23 N -0.095 5.095 24 H 0.286 0.714 25 C -0.181 4.181 26 C 0.382 3.618 27 N -0.393 5.393 28 O -0.460 6.460 29 C -0.095 4.095 30 H 0.065 0.935 31 H 0.198 0.802 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.250 0.750 41 H 0.233 0.767 42 H 0.246 0.754 43 H 0.251 0.749 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.949 -16.917 -3.287 18.979 hybrid contribution -1.011 0.967 0.001 1.399 sum 6.937 -15.951 -3.286 17.702 Atomic orbital electron populations 1.69856 1.06969 1.26442 1.60111 1.25404 0.95982 1.00925 1.03102 0.85539 0.78710 0.80305 0.78052 1.20399 1.22916 1.17847 1.19071 0.82548 0.93629 1.40465 0.91445 1.42721 1.02505 1.04087 1.90785 1.20857 0.89583 0.87816 0.98485 1.22172 0.94463 0.96042 0.99676 0.90398 1.22393 0.97265 0.99935 0.95707 1.22435 0.96529 0.94288 1.01878 1.22718 0.99544 0.97914 0.96316 1.21540 0.90351 0.84037 0.99219 0.90553 1.46117 1.17775 1.12245 1.60311 1.17704 0.86030 0.82307 0.76386 1.90730 1.22514 1.83516 1.50435 1.19596 0.96276 0.95970 1.15189 1.22946 0.92867 0.89175 0.98432 1.41585 1.14273 1.10506 1.43106 0.71392 1.19785 0.91899 0.93905 1.12512 1.17066 0.83077 0.84051 0.77635 1.43467 1.13799 1.19202 1.62835 1.90890 1.43024 1.66927 1.45109 1.21052 0.97603 0.92159 0.98652 0.93548 0.80246 0.94109 0.95297 0.91595 0.91347 0.90676 0.89974 0.91649 0.90805 0.74959 0.76686 0.75413 0.74929 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.11 13.97 21.65 0.30 -59.81 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.95 43.49 27.73 68.60 1.90 45.39 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 7 C -0.23 -11.83 10.47 84.03 0.88 -10.95 16 8 H 0.07 3.76 8.06 -2.91 -0.02 3.73 16 9 N -0.76 -31.81 5.25 -343.45 -1.80 -33.62 16 10 C 0.16 5.08 4.18 86.38 0.36 5.44 16 11 C -0.10 -2.76 2.96 -10.07 -0.03 -2.79 16 12 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.12 -2.73 6.08 31.67 0.19 -2.54 16 14 C -0.11 -2.19 6.91 31.88 0.22 -1.97 16 15 C -0.13 -2.75 6.52 31.67 0.21 -2.54 16 16 C 0.15 3.87 3.21 45.72 0.15 4.01 16 17 H 0.08 2.17 7.61 -2.39 -0.02 2.15 16 18 N -0.71 -17.29 4.41 -442.39 -1.95 -19.24 16 19 C 0.59 16.81 7.80 86.65 0.68 17.49 16 20 O -0.59 -21.70 16.60 -4.06 -0.07 -21.76 16 21 C -0.26 -6.17 6.13 -20.12 -0.12 -6.29 16 22 C 0.11 1.59 11.43 84.31 0.96 2.55 16 23 N -0.50 -5.26 5.91 -183.36 -1.08 -6.35 16 24 H 0.44 0.66 8.14 -92.71 -0.75 -0.09 16 25 C -0.07 -1.31 6.99 40.01 0.28 -1.03 16 26 C 0.60 11.41 8.06 86.48 0.70 12.11 16 27 N -0.83 -6.53 8.87 -176.30 -1.56 -8.10 16 28 O -0.58 -16.96 17.70 -4.29 -0.08 -17.04 16 29 C -0.07 -1.75 10.37 22.58 0.23 -1.52 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.36 15.01 5.41 -92.71 -0.50 14.51 16 32 H 0.04 1.21 7.12 -2.39 -0.02 1.20 16 33 H 0.03 0.96 7.40 -2.39 -0.02 0.94 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.72 7.76 -2.39 -0.02 1.70 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 40 H 0.41 8.54 4.75 -92.71 -0.44 8.10 16 41 H 0.22 1.78 7.44 -2.91 -0.02 1.76 16 42 H 0.41 0.19 7.91 -92.71 -0.73 -0.54 16 43 H 0.42 2.41 8.93 -92.71 -0.83 1.58 16 44 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -82.80 363.44 -1.39 -84.19 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -2.22 Total: 27.38 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.17 Total: 8.94 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -6.10 Total: -127.10 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.14 Total: -38.80 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.90 Total: 45.39 kcal Total: -82.80 -1.39 -84.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753902436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.346 kcal (2) G-P(sol) polarization free energy of solvation -82.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds