Wall clock time and date at job start Tue Mar 31 2020 12:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 119.99813 * 2 1 4 4 H 1.48496 * 109.47089 * 270.00521 * 3 2 1 5 5 H 1.48497 * 109.47080 * 30.00049 * 3 2 1 6 6 H 1.48498 * 109.46976 * 150.00062 * 3 2 1 7 7 C 1.38809 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00211 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99779 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47098 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47442 * 64.99903 * 11 10 9 13 13 N 1.46500 * 109.47095 * 304.99520 * 11 10 9 14 14 C 1.34779 * 120.00041 * 154.99816 * 13 11 10 15 15 O 1.21667 * 119.99682 * 0.02562 * 14 13 11 16 16 C 1.46917 * 120.00066 * 180.02562 * 14 13 11 17 17 C 1.41702 * 126.56208 * 359.97438 * 16 14 13 18 18 N 1.30555 * 108.19714 * 179.97438 * 17 16 14 19 19 N 1.39356 * 109.06002 * 359.95819 * 18 17 16 20 20 C 1.35158 * 108.46413 * 0.10102 * 19 18 17 21 21 O 1.35457 * 123.87164 * 179.85851 * 20 19 18 22 22 C 1.43537 * 115.05562 * 344.47829 * 21 20 19 23 23 C 1.53255 * 109.23314 * 46.88173 * 22 21 20 24 24 C 1.46793 * 127.97860 * 180.17331 * 19 18 17 25 25 C 1.53004 * 109.47116 * 185.00011 * 11 10 9 26 26 C 1.52996 * 117.50135 * 248.74462 * 25 11 10 27 27 C 1.53002 * 117.50016 * 180.08253 * 25 11 10 28 28 H 0.96999 * 120.00215 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00309 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47569 * 59.99981 * 10 9 7 31 31 H 1.09001 * 109.47196 * 300.00342 * 10 9 7 32 32 H 0.97001 * 119.99944 * 335.00750 * 13 11 10 33 33 H 1.08004 * 125.90512 * 359.95267 * 17 16 14 34 34 H 1.09002 * 109.52026 * 166.82424 * 22 21 20 35 35 H 1.09001 * 109.52045 * 286.93928 * 22 21 20 36 36 H 1.08996 * 109.50589 * 55.84876 * 23 22 21 37 37 H 1.08994 * 109.51006 * 175.98684 * 23 22 21 38 38 H 1.09001 * 109.75802 * 282.50120 * 24 19 18 39 39 H 1.08999 * 109.76033 * 43.20387 * 24 19 18 40 40 H 1.09004 * 115.54722 * 34.41497 * 25 11 10 41 41 H 1.08998 * 117.49479 * 359.97438 * 26 25 11 42 42 H 1.08993 * 117.50337 * 145.01638 * 26 25 11 43 43 H 1.08997 * 117.49876 * 214.97600 * 27 25 11 44 44 H 1.09001 * 117.49415 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0022 11 6 5.6164 -2.1911 -0.0020 12 1 5.8943 -1.6985 0.9298 13 7 5.9517 -1.3220 -1.1327 14 6 7.0496 -0.5420 -1.0807 15 8 7.7624 -0.5600 -0.0949 16 6 7.3856 0.3300 -2.2144 17 6 6.6586 0.4600 -3.4237 18 7 7.2742 1.3298 -4.1780 19 7 8.4037 1.7951 -3.5073 20 6 8.4714 1.1804 -2.3055 21 8 9.4529 1.4017 -1.3986 22 6 10.6157 2.0685 -1.9119 23 6 10.1774 3.2741 -2.7505 24 6 9.3871 2.7814 -3.9708 25 6 6.3805 -3.5106 -0.1289 26 6 7.1796 -3.9840 1.0869 27 6 7.9089 -3.4432 -0.1455 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0007 30 1 3.8486 -3.0418 -0.8924 31 1 3.8492 -3.0429 0.8875 32 1 5.3835 -1.3079 -1.9187 33 1 5.7521 -0.0694 -3.6779 34 1 11.2366 2.4081 -1.0828 35 1 11.1855 1.3793 -2.5351 36 1 9.5452 3.9261 -2.1478 37 1 11.0569 3.8250 -3.0836 38 1 10.0666 2.3166 -4.6853 39 1 8.8742 3.6198 -4.4421 40 1 5.9036 -4.2725 -0.7455 41 1 7.1613 -3.3552 1.9770 42 1 7.2288 -5.0573 1.2701 43 1 8.4375 -4.1610 -0.7726 44 1 8.3701 -2.4587 -0.0664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754444780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:52 Heat of formation + Delta-G solvation = 53.991000 kcal Electronic energy + Delta-G solvation = -27584.321991 eV Core-core repulsion = 23733.465764 eV Total energy + Delta-G solvation = -3850.856228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06928 -39.55578 -38.76638 -36.99428 -35.06258 -34.96528 -33.33637 -31.45357 -31.06725 -29.92206 -28.19309 -26.70496 -24.34796 -23.58560 -22.56741 -22.04828 -21.25225 -20.66436 -20.01349 -19.91190 -18.49173 -17.62636 -17.00660 -16.66159 -16.07510 -15.58484 -15.33426 -15.22925 -15.02309 -14.80811 -14.61299 -14.26542 -13.77638 -13.52834 -13.42741 -13.10830 -12.85660 -12.69401 -12.16239 -12.15327 -11.91635 -11.80937 -11.61647 -11.18820 -11.13763 -10.96606 -10.94582 -10.81909 -10.14220 -10.05453 -9.85556 -9.56143 -9.46906 -9.44579 -8.88210 -8.66518 -8.42869 -7.21300 -5.74410 -3.09892 1.45153 1.86551 2.11935 2.70514 3.40804 3.46390 3.48317 3.49915 3.66981 3.73237 3.92484 4.21519 4.29876 4.36716 4.62786 4.66309 4.69589 4.84347 4.86553 4.98542 5.02628 5.20060 5.22392 5.29573 5.32920 5.40120 5.53264 5.54971 5.71383 5.85280 5.87441 5.91627 6.02215 6.17762 6.28553 6.40060 6.51773 6.58627 6.68952 6.97647 6.99936 7.37515 7.96157 8.02064 8.44519 8.67080 9.24060 9.96472 10.16259 11.43873 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004676 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.841025 B = 5986.829116 C = 7805.201696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.008 3.992 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.168 3.832 12 H 0.088 0.912 13 N -0.710 5.710 14 C 0.599 3.401 15 O -0.545 6.545 16 C -0.302 4.302 17 C 0.107 3.893 18 N -0.285 5.285 19 N -0.401 5.401 20 C 0.335 3.665 21 O -0.261 6.261 22 C 0.043 3.957 23 C -0.178 4.178 24 C 0.129 3.871 25 C -0.161 4.161 26 C -0.172 4.172 27 C -0.184 4.184 28 H 0.259 0.741 29 H 0.363 0.637 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.401 0.599 33 H 0.200 0.800 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.700 2.410 -8.285 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.188 4.188 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.063 3.937 12 H 0.106 0.894 13 N -0.360 5.360 14 C 0.387 3.613 15 O -0.425 6.425 16 C -0.317 4.317 17 C -0.082 4.082 18 N -0.106 5.106 19 N -0.195 5.195 20 C 0.163 3.837 21 O -0.166 6.166 22 C -0.032 4.032 23 C -0.217 4.217 24 C 0.008 3.992 25 C -0.181 4.181 26 C -0.209 4.209 27 C -0.221 4.221 28 H 0.069 0.931 29 H 0.197 0.803 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.236 0.764 33 H 0.216 0.784 34 H 0.141 0.859 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 25.112 2.972 -8.440 26.659 hybrid contribution 0.329 1.019 0.158 1.082 sum 25.441 3.991 -8.283 27.051 Atomic orbital electron populations 1.69696 1.05072 1.25788 1.57598 1.24626 0.95147 0.97039 1.01980 0.86632 0.79394 0.85181 0.77934 1.20948 1.21773 1.20254 1.19050 0.80538 0.94727 1.43025 0.89091 1.42714 1.04045 1.02191 1.91184 1.20898 0.87052 0.89763 0.99750 1.20822 0.94980 0.87980 0.89893 0.89418 1.45735 1.26534 1.42900 1.20837 1.16860 0.80612 0.78609 0.85217 1.90710 1.50872 1.67809 1.33077 1.19184 1.01377 1.10618 1.00490 1.24130 0.98814 0.95052 0.90229 1.77089 0.96758 1.16902 1.19857 1.48995 1.22418 1.35017 1.13050 1.19708 0.90394 0.91194 0.82446 1.86762 1.24714 1.74193 1.30890 1.23235 0.86127 0.93376 1.00472 1.22685 1.02532 0.99299 0.97164 1.21967 0.88912 0.91111 0.97206 1.22626 0.93759 0.99099 1.02634 1.22893 1.04671 1.00580 0.92804 1.23266 0.94097 1.04095 1.00664 0.93081 0.80345 0.94818 0.93905 0.76380 0.78382 0.85923 0.90687 0.89044 0.86924 0.89074 0.87670 0.87771 0.88804 0.89259 0.90039 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.72 27.74 -169.99 -4.71 18.00 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.28 -7.01 6.52 56.52 0.37 -6.64 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.87 5.24 -59.91 -0.31 -18.19 16 10 C 0.15 2.91 5.80 -4.04 -0.02 2.88 16 11 C 0.17 2.81 2.43 -67.93 -0.17 2.64 16 12 H 0.09 1.66 7.33 -51.93 -0.38 1.28 16 13 N -0.71 -11.42 4.49 -55.04 -0.25 -11.67 16 14 C 0.60 10.33 7.13 -12.75 -0.09 10.24 16 15 O -0.55 -10.73 13.55 2.87 0.04 -10.69 16 16 C -0.30 -4.69 6.14 -105.07 -0.64 -5.33 16 17 C 0.11 1.46 11.51 -16.77 -0.19 1.26 16 18 N -0.28 -3.92 12.54 30.97 0.39 -3.53 16 19 N -0.40 -4.83 4.04 -60.47 -0.24 -5.08 16 20 C 0.34 4.76 7.50 -16.09 -0.12 4.64 16 21 O -0.26 -3.44 10.18 -20.41 -0.21 -3.65 16 22 C 0.04 0.30 7.01 37.29 0.26 0.56 16 23 C -0.18 -0.90 6.17 -26.34 -0.16 -1.06 16 24 C 0.13 0.89 7.40 -3.62 -0.03 0.86 16 25 C -0.16 -2.30 5.36 -90.62 -0.49 -2.79 16 26 C -0.17 -2.29 10.18 -26.69 -0.27 -2.57 16 27 C -0.18 -2.60 9.74 -26.69 -0.26 -2.86 16 28 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 29 H 0.36 8.70 5.20 -40.82 -0.21 8.49 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.40 5.89 7.56 -40.82 -0.31 5.58 16 33 H 0.20 2.16 7.51 -52.48 -0.39 1.77 16 34 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 41 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.12 1.96 5.01 -51.93 -0.26 1.70 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -36.81 361.37 -7.73 -44.54 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.21 Total: 11.87 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.44 Total: 1.61 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 0.36 Total: -67.13 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.17 Total: -14.34 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.81 -7.73 -44.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.533 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds