Wall clock time and date at job start Tue Mar 31 2020 12:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 119.99813 * 2 1 4 4 H 1.48496 * 109.47089 * 270.00521 * 3 2 1 5 5 H 1.48497 * 109.47080 * 30.00049 * 3 2 1 6 6 H 1.48498 * 109.46976 * 150.00062 * 3 2 1 7 7 C 1.38809 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00211 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99779 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47098 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47442 * 64.99903 * 11 10 9 13 13 N 1.46500 * 109.47095 * 304.99520 * 11 10 9 14 14 C 1.34779 * 120.00041 * 154.99816 * 13 11 10 15 15 O 1.21667 * 119.99682 * 0.02562 * 14 13 11 16 16 C 1.46917 * 120.00066 * 180.02562 * 14 13 11 17 17 C 1.41702 * 126.56208 * 359.97438 * 16 14 13 18 18 N 1.30555 * 108.19714 * 179.97438 * 17 16 14 19 19 N 1.39356 * 109.06002 * 359.95819 * 18 17 16 20 20 C 1.35158 * 108.46413 * 0.10102 * 19 18 17 21 21 O 1.35457 * 123.87164 * 179.85851 * 20 19 18 22 22 C 1.43537 * 115.05562 * 344.47829 * 21 20 19 23 23 C 1.53255 * 109.23314 * 46.88173 * 22 21 20 24 24 C 1.46793 * 127.97860 * 180.17331 * 19 18 17 25 25 C 1.53004 * 109.47116 * 185.00011 * 11 10 9 26 26 C 1.52996 * 117.50135 * 248.74462 * 25 11 10 27 27 C 1.53002 * 117.50016 * 180.08253 * 25 11 10 28 28 H 0.96999 * 120.00215 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00309 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47569 * 59.99981 * 10 9 7 31 31 H 1.09001 * 109.47196 * 300.00342 * 10 9 7 32 32 H 0.97001 * 119.99944 * 335.00750 * 13 11 10 33 33 H 1.08004 * 125.90512 * 359.95267 * 17 16 14 34 34 H 1.09002 * 109.52026 * 166.82424 * 22 21 20 35 35 H 1.09001 * 109.52045 * 286.93928 * 22 21 20 36 36 H 1.08996 * 109.50589 * 55.84876 * 23 22 21 37 37 H 1.08994 * 109.51006 * 175.98684 * 23 22 21 38 38 H 1.09001 * 109.75802 * 282.50120 * 24 19 18 39 39 H 1.08999 * 109.76033 * 43.20387 * 24 19 18 40 40 H 1.09004 * 115.54722 * 34.41497 * 25 11 10 41 41 H 1.08998 * 117.49479 * 359.97438 * 26 25 11 42 42 H 1.08993 * 117.50337 * 145.01638 * 26 25 11 43 43 H 1.08997 * 117.49876 * 214.97600 * 27 25 11 44 44 H 1.09001 * 117.49415 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0022 11 6 5.6164 -2.1911 -0.0020 12 1 5.8943 -1.6985 0.9298 13 7 5.9517 -1.3220 -1.1327 14 6 7.0496 -0.5420 -1.0807 15 8 7.7624 -0.5600 -0.0949 16 6 7.3856 0.3300 -2.2144 17 6 6.6586 0.4600 -3.4237 18 7 7.2742 1.3298 -4.1780 19 7 8.4037 1.7951 -3.5073 20 6 8.4714 1.1804 -2.3055 21 8 9.4529 1.4017 -1.3986 22 6 10.6157 2.0685 -1.9119 23 6 10.1774 3.2741 -2.7505 24 6 9.3871 2.7814 -3.9708 25 6 6.3805 -3.5106 -0.1289 26 6 7.1796 -3.9840 1.0869 27 6 7.9089 -3.4432 -0.1455 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0007 30 1 3.8486 -3.0418 -0.8924 31 1 3.8492 -3.0429 0.8875 32 1 5.3835 -1.3079 -1.9187 33 1 5.7521 -0.0694 -3.6779 34 1 11.2366 2.4081 -1.0828 35 1 11.1855 1.3793 -2.5351 36 1 9.5452 3.9261 -2.1478 37 1 11.0569 3.8250 -3.0836 38 1 10.0666 2.3166 -4.6853 39 1 8.8742 3.6198 -4.4421 40 1 5.9036 -4.2725 -0.7455 41 1 7.1613 -3.3552 1.9770 42 1 7.2288 -5.0573 1.2701 43 1 8.4375 -4.1610 -0.7726 44 1 8.3701 -2.4587 -0.0664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754444780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:52 Heat of formation + Delta-G solvation = 26.302227 kcal Electronic energy + Delta-G solvation = -27585.522666 eV Core-core repulsion = 23733.465764 eV Total energy + Delta-G solvation = -3852.056903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.98715 -40.80815 -39.66023 -38.27346 -36.71119 -35.66923 -34.92557 -33.31345 -31.98493 -31.10555 -29.67909 -27.36704 -25.87667 -24.78701 -23.57822 -23.15145 -22.94190 -21.73257 -21.18609 -20.77569 -19.92230 -19.19239 -18.05614 -17.56336 -17.22151 -16.73637 -16.49212 -16.36803 -16.03998 -15.98297 -15.84303 -15.33726 -15.22543 -14.82594 -14.70244 -14.51797 -14.38948 -13.81896 -13.53049 -13.42610 -12.89998 -12.75212 -12.66586 -12.60323 -12.51737 -12.25627 -12.16805 -12.10617 -11.84992 -11.82852 -11.21442 -11.06901 -11.00422 -10.73629 -10.32791 -9.94619 -9.51832 -9.29495 -8.02312 -5.34359 0.43808 1.04554 1.05489 1.35626 1.37678 1.43648 1.96190 2.26345 2.44518 2.46239 3.03406 3.17055 3.30295 3.46795 3.47676 3.65556 3.86592 3.90644 3.94259 4.03290 4.09035 4.20015 4.21666 4.23489 4.36684 4.47254 4.47740 4.55095 4.59868 4.65700 4.85262 4.86750 4.94530 5.05106 5.08787 5.14433 5.31729 5.35815 5.43702 5.64459 5.78465 6.13293 6.21895 6.38781 6.71055 7.07997 7.39387 7.84094 8.02294 9.19236 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004676 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.841025 B = 5986.829116 C = 7805.201696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.053 4.053 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.227 4.227 8 H 0.067 0.933 9 N -0.757 5.757 10 C 0.154 3.846 11 C 0.178 3.822 12 H 0.063 0.937 13 N -0.706 5.706 14 C 0.598 3.402 15 O -0.577 6.577 16 C -0.337 4.337 17 C 0.106 3.894 18 N -0.300 5.300 19 N -0.394 5.394 20 C 0.334 3.666 21 O -0.291 6.291 22 C 0.029 3.971 23 C -0.166 4.166 24 C 0.113 3.887 25 C -0.163 4.163 26 C -0.164 4.164 27 C -0.182 4.182 28 H 0.258 0.742 29 H 0.363 0.637 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.408 0.592 33 H 0.217 0.783 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.157 0.843 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.293 2.886 -9.525 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.245 4.245 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.357 4.357 8 H 0.085 0.915 9 N -0.403 5.403 10 C 0.027 3.973 11 C 0.073 3.927 12 H 0.081 0.919 13 N -0.357 5.357 14 C 0.387 3.613 15 O -0.459 6.459 16 C -0.352 4.352 17 C -0.083 4.083 18 N -0.121 5.121 19 N -0.188 5.188 20 C 0.159 3.841 21 O -0.195 6.195 22 C -0.045 4.045 23 C -0.204 4.204 24 C -0.005 4.005 25 C -0.183 4.183 26 C -0.202 4.202 27 C -0.219 4.219 28 H 0.067 0.933 29 H 0.196 0.804 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.244 0.756 33 H 0.234 0.766 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.175 0.825 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 27.758 3.439 -9.710 29.608 hybrid contribution -0.353 0.842 0.547 1.065 sum 27.405 4.282 -9.163 29.212 Atomic orbital electron populations 1.69844 1.06761 1.26454 1.59979 1.25282 0.95833 1.00345 1.02999 0.85614 0.78023 0.81028 0.78307 1.19794 1.22338 1.19709 1.19062 0.82381 0.93657 1.40643 0.91507 1.42725 1.02616 1.03961 1.90975 1.21040 0.88098 0.87858 1.00265 1.20586 0.93543 0.89274 0.89255 0.91902 1.45675 1.26495 1.42742 1.20759 1.17120 0.80277 0.78540 0.85340 1.90685 1.51909 1.68879 1.34430 1.19218 1.03096 1.12006 1.00831 1.24397 0.99287 0.95081 0.89512 1.77016 0.97606 1.17119 1.20375 1.49383 1.22335 1.34927 1.12175 1.19785 0.90341 0.90890 0.83103 1.86731 1.26022 1.74869 1.31893 1.23712 0.84505 0.94214 1.02044 1.22701 1.03618 0.98291 0.95832 1.22523 0.88616 0.90733 0.98632 1.22559 0.93737 0.98082 1.03893 1.22980 1.03404 1.01832 0.91958 1.23173 0.93762 1.03393 1.01605 0.93346 0.80386 0.93221 0.93856 0.75575 0.76641 0.83801 0.89292 0.90276 0.82545 0.86658 0.86481 0.85927 0.89951 0.86705 0.88101 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.81 13.97 21.65 0.30 -62.51 16 2 C -0.05 -3.12 5.50 84.86 0.47 -2.66 16 3 Si 0.94 47.33 27.74 68.60 1.90 49.23 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 6 H -0.27 -13.24 6.52 99.48 0.65 -12.59 16 7 C -0.23 -12.83 10.47 84.03 0.88 -11.95 16 8 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 9 N -0.76 -35.48 5.24 -343.45 -1.80 -37.28 16 10 C 0.15 5.72 5.80 86.38 0.50 6.22 16 11 C 0.18 5.88 2.43 44.99 0.11 5.99 16 12 H 0.06 2.41 7.33 -2.39 -0.02 2.39 16 13 N -0.71 -22.49 4.49 -446.27 -2.00 -24.50 16 14 C 0.60 20.78 7.13 86.52 0.62 21.40 16 15 O -0.58 -23.25 13.55 -2.00 -0.03 -23.27 16 16 C -0.34 -10.42 6.14 -20.15 -0.12 -10.54 16 17 C 0.11 2.82 11.51 85.74 0.99 3.80 16 18 N -0.30 -7.89 12.54 -55.93 -0.70 -8.59 16 19 N -0.39 -8.91 4.04 -456.70 -1.85 -10.76 16 20 C 0.33 9.30 7.50 84.18 0.63 9.93 16 21 O -0.29 -7.49 10.18 -85.30 -0.87 -8.36 16 22 C 0.03 0.34 7.01 72.07 0.51 0.85 16 23 C -0.17 -1.17 6.17 30.85 0.19 -0.98 16 24 C 0.11 1.25 7.40 86.49 0.64 1.89 16 25 C -0.16 -4.41 5.36 -10.79 -0.06 -4.47 16 26 C -0.16 -4.12 10.18 30.62 0.31 -3.81 16 27 C -0.18 -4.93 9.74 30.62 0.30 -4.63 16 28 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 29 H 0.36 17.14 5.20 -92.71 -0.48 16.66 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.41 11.70 7.56 -92.71 -0.70 11.00 16 33 H 0.22 4.53 7.51 -2.91 -0.02 4.50 16 34 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.12 2.90 8.11 -2.39 -0.02 2.88 16 41 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 42 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.09 3.09 5.01 -2.39 -0.01 3.07 16 Total: -1.00 -81.31 361.37 0.72 -80.60 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.20 Total: 34.40 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 5.96 Total: 11.04 kcal Atomic # 7 Polarization: -137.59 SS G_CDS: -6.05 Total: -143.63 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.90 Total: -31.64 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.90 Total: 49.23 kcal Total: -81.31 0.72 -80.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.899 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds