Wall clock time and date at job start Tue Mar 31 2020 12:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99892 * 2 1 4 4 H 1.48506 * 109.47038 * 269.99780 * 3 2 1 5 5 H 1.48500 * 109.47302 * 29.99734 * 3 2 1 6 6 H 1.48503 * 109.47418 * 150.00017 * 3 2 1 7 7 C 1.38816 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99484 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99991 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47332 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46776 * 65.00116 * 11 10 9 13 13 N 1.46496 * 109.47124 * 304.99927 * 11 10 9 14 14 C 1.34766 * 120.00103 * 154.99838 * 13 11 10 15 15 O 1.21679 * 120.00288 * 354.58192 * 14 13 11 16 16 C 1.46771 * 120.00159 * 174.58156 * 14 13 11 17 17 C 1.36940 * 126.93943 * 185.53739 * 16 14 13 18 18 N 1.33568 * 107.86402 * 179.97438 * 17 16 14 19 19 C 1.30247 * 109.65308 * 359.97438 * 18 17 16 20 20 N 1.35190 * 108.97042 * 359.81288 * 19 18 17 21 21 C 1.46500 * 123.69582 * 179.54871 * 20 19 18 22 22 C 1.53480 * 108.18452 * 344.26166 * 21 20 19 23 23 O 1.43036 * 109.61063 * 47.93375 * 22 21 20 24 24 C 1.43426 * 114.05498 * 290.03626 * 23 22 21 25 25 C 1.53002 * 109.47052 * 184.99671 * 11 10 9 26 26 C 1.53003 * 117.49611 * 248.74494 * 25 11 10 27 27 C 1.52997 * 117.49609 * 180.08794 * 25 11 10 28 28 H 0.97005 * 119.99955 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00440 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47823 * 59.99712 * 10 9 7 31 31 H 1.09008 * 109.47180 * 299.99759 * 10 9 7 32 32 H 0.97007 * 119.99611 * 334.99812 * 13 11 10 33 33 H 1.07998 * 126.07178 * 359.95185 * 17 16 14 34 34 H 1.08994 * 109.88504 * 224.47928 * 21 20 19 35 35 H 1.09001 * 109.56195 * 103.84931 * 21 20 19 36 36 H 1.09001 * 109.44784 * 287.88692 * 22 21 20 37 37 H 1.09004 * 109.42245 * 167.96160 * 22 21 20 38 38 H 1.08998 * 109.78978 * 290.05111 * 24 23 22 39 39 H 1.09003 * 109.83836 * 169.24430 * 24 23 22 40 40 H 1.08995 * 115.55318 * 34.41903 * 25 11 10 41 41 H 1.08996 * 117.49947 * 0.02562 * 26 25 11 42 42 H 1.09007 * 117.49711 * 145.02377 * 26 25 11 43 43 H 1.09003 * 117.50041 * 214.97876 * 27 25 11 44 44 H 1.09007 * 117.49943 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.4980 -4.8142 -0.9296 13 7 0.1439 -4.6753 1.1330 14 6 -1.0805 -5.2362 1.0816 15 8 -1.4593 -5.7775 0.0598 16 6 -1.9569 -5.1941 2.2581 17 6 -3.1751 -5.8036 2.3991 18 7 -3.6389 -5.5154 3.6180 19 6 -2.7816 -4.7623 4.2461 20 7 -1.7186 -4.5407 3.4408 21 6 -0.5650 -3.7231 3.8243 22 6 -0.9557 -2.8894 5.0522 23 8 -1.5813 -3.7312 6.0248 24 6 -2.8831 -4.1972 5.6439 25 6 1.8246 -6.1411 0.1289 26 6 1.8345 -7.0700 -1.0868 27 6 1.0021 -7.4310 0.1460 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6841 -3.7142 0.8921 31 1 2.6854 -3.7149 -0.8879 32 1 0.4161 -4.1760 1.9189 33 1 -3.6727 -6.4095 1.6564 34 1 -0.2899 -3.0617 3.0028 35 1 0.2756 -4.3714 4.0720 36 1 -1.6494 -2.1041 4.7519 37 1 -0.0619 -2.4385 5.4835 38 1 -3.5902 -3.3677 5.6560 39 1 -3.2142 -4.9742 6.3329 40 1 2.7231 -6.1090 0.7451 41 1 1.2994 -6.7396 -1.9770 42 1 2.7395 -7.6493 -1.2702 43 1 1.3596 -8.2477 0.7731 44 1 -0.0812 -7.3382 0.0673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754445160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:40 Heat of formation + Delta-G solvation = 30.445794 kcal Electronic energy + Delta-G solvation = -27971.925501 eV Core-core repulsion = 24120.048277 eV Total energy + Delta-G solvation = -3851.877224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59766 -39.69261 -38.51302 -37.15295 -35.23167 -34.54073 -33.29974 -31.31530 -30.73005 -30.04157 -28.21782 -26.27089 -24.26766 -24.18138 -22.82638 -22.15212 -21.57762 -20.66623 -20.17003 -19.78987 -18.04967 -17.36671 -16.99917 -16.31274 -16.23401 -15.67259 -15.48305 -15.31878 -15.03271 -14.91137 -14.43969 -14.22817 -13.87306 -13.61668 -13.30744 -13.20773 -12.98700 -12.91171 -12.22543 -12.13606 -11.76991 -11.54137 -11.31385 -11.15988 -11.00409 -10.91754 -10.58840 -10.33042 -10.27993 -10.17841 -10.04676 -9.84182 -9.78831 -9.73350 -9.04405 -8.86255 -8.46464 -7.10358 -5.90421 -3.21391 1.28517 2.31014 2.73399 3.18807 3.32860 3.33646 3.39413 3.40830 3.45691 3.87024 4.04030 4.15487 4.44471 4.53524 4.64015 4.78874 4.81994 4.99587 5.07561 5.13598 5.17152 5.21468 5.27706 5.31928 5.37221 5.42721 5.53454 5.68532 5.78019 5.80204 5.91558 5.99014 6.11214 6.27530 6.34461 6.38798 6.40862 6.53743 6.57263 6.77481 6.84964 7.56686 7.60061 7.84647 8.26480 8.31268 9.38730 9.92906 10.28587 11.31411 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008977 B = 0.005297 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.493268 B = 5284.258865 C = 7482.723824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.733 5.733 10 C 0.147 3.853 11 C 0.166 3.834 12 H 0.093 0.907 13 N -0.709 5.709 14 C 0.598 3.402 15 O -0.529 6.529 16 C -0.067 4.067 17 C 0.057 3.943 18 N -0.482 5.482 19 C 0.185 3.815 20 N -0.433 5.433 21 C 0.053 3.947 22 C 0.050 3.950 23 O -0.371 6.371 24 C 0.148 3.852 25 C -0.165 4.165 26 C -0.168 4.168 27 C -0.183 4.183 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.024 0.976 31 H 0.039 0.961 32 H 0.397 0.603 33 H 0.186 0.814 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -10.959 10.201 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.019 3.981 11 C 0.062 3.938 12 H 0.111 0.889 13 N -0.361 5.361 14 C 0.385 3.615 15 O -0.406 6.406 16 C -0.183 4.183 17 C -0.097 4.097 18 N -0.201 5.201 19 C -0.078 4.078 20 N -0.118 5.118 21 C -0.069 4.069 22 C -0.027 4.027 23 O -0.288 6.288 24 C 0.070 3.930 25 C -0.185 4.185 26 C -0.205 4.205 27 C -0.220 4.220 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.235 0.765 33 H 0.203 0.797 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.106 0.894 39 H 0.146 0.854 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.476 -11.419 9.990 15.244 hybrid contribution 1.088 1.563 -0.427 1.952 sum -0.388 -9.856 9.563 13.738 Atomic orbital electron populations 1.69670 1.05115 1.25823 1.57247 1.24757 0.95501 0.97738 1.02672 0.86195 0.78603 0.83683 0.77695 1.21600 1.21760 1.20713 1.19209 0.91069 0.83928 1.43375 0.91033 1.42370 1.05935 0.99754 1.89700 1.20935 0.92973 0.85008 0.99151 1.20879 0.90067 0.92999 0.89852 0.88929 1.46169 1.14517 1.54268 1.21196 1.16752 0.80714 0.78567 0.85502 1.90783 1.74209 1.45543 1.30034 1.21153 1.01131 1.07566 0.88464 1.22676 0.91662 1.00982 0.94362 1.69820 1.28477 1.15410 1.06405 1.24106 0.85721 1.01046 0.96893 1.45262 1.17243 1.37366 1.11891 1.23050 0.87674 0.95511 1.00683 1.23025 1.00275 0.91750 0.87658 1.88153 1.31159 1.67326 1.42185 1.21308 0.85554 0.99147 0.87020 1.22659 1.01519 0.91340 1.03008 1.22910 1.02042 1.02854 0.92728 1.23167 1.00277 0.97518 1.01046 0.93404 0.78112 0.95789 0.94325 0.76519 0.79732 0.86374 0.88152 0.90783 0.85525 0.89396 0.85408 0.87801 0.88574 0.89042 0.89671 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.79 13.06 55.49 0.72 -26.07 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.73 -17.19 5.43 -59.91 -0.33 -17.51 16 10 C 0.15 2.73 5.80 -4.04 -0.02 2.71 16 11 C 0.17 2.73 2.45 -67.93 -0.17 2.57 16 12 H 0.09 1.74 7.26 -51.93 -0.38 1.36 16 13 N -0.71 -11.34 4.48 -55.09 -0.25 -11.59 16 14 C 0.60 10.25 6.95 -12.82 -0.09 10.16 16 15 O -0.53 -10.15 14.30 5.21 0.07 -10.08 16 16 C -0.07 -1.07 6.95 -82.48 -0.57 -1.64 16 17 C 0.06 0.88 11.68 -17.27 -0.20 0.68 16 18 N -0.48 -7.27 11.19 -10.29 -0.12 -7.39 16 19 C 0.18 2.49 7.78 -155.29 -1.21 1.28 16 20 N -0.43 -6.03 3.16 -109.66 -0.35 -6.37 16 21 C 0.05 0.61 5.60 -3.79 -0.02 0.59 16 22 C 0.05 0.48 6.83 37.41 0.26 0.74 16 23 O -0.37 -3.83 10.78 -35.23 -0.38 -4.21 16 24 C 0.15 1.44 7.29 36.20 0.26 1.71 16 25 C -0.17 -2.28 5.36 -90.62 -0.49 -2.77 16 26 C -0.17 -2.14 10.18 -26.69 -0.27 -2.41 16 27 C -0.18 -2.48 9.75 -26.70 -0.26 -2.74 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.38 9.77 7.33 -40.82 -0.30 9.48 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.40 5.96 4.79 -40.82 -0.20 5.77 16 33 H 0.19 2.55 8.06 -52.49 -0.42 2.13 16 34 H 0.12 1.56 6.68 -51.93 -0.35 1.21 16 35 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 41 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.11 1.77 5.26 -51.93 -0.27 1.49 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -31.96 360.26 -9.34 -41.30 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -6.10 Total: 16.26 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.03 Total: 3.94 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -0.31 Total: -68.94 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.31 Total: -14.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.96 -9.34 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754445160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.742 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds