Wall clock time and date at job start Tue Mar 31 2020 12:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99892 * 2 1 4 4 H 1.48506 * 109.47038 * 269.99780 * 3 2 1 5 5 H 1.48500 * 109.47302 * 29.99734 * 3 2 1 6 6 H 1.48503 * 109.47418 * 150.00017 * 3 2 1 7 7 C 1.38816 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99484 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99991 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47332 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46776 * 65.00116 * 11 10 9 13 13 N 1.46496 * 109.47124 * 304.99927 * 11 10 9 14 14 C 1.34766 * 120.00103 * 154.99838 * 13 11 10 15 15 O 1.21679 * 120.00288 * 354.58192 * 14 13 11 16 16 C 1.46771 * 120.00159 * 174.58156 * 14 13 11 17 17 C 1.36940 * 126.93943 * 185.53739 * 16 14 13 18 18 N 1.33568 * 107.86402 * 179.97438 * 17 16 14 19 19 C 1.30247 * 109.65308 * 359.97438 * 18 17 16 20 20 N 1.35190 * 108.97042 * 359.81288 * 19 18 17 21 21 C 1.46500 * 123.69582 * 179.54871 * 20 19 18 22 22 C 1.53480 * 108.18452 * 344.26166 * 21 20 19 23 23 O 1.43036 * 109.61063 * 47.93375 * 22 21 20 24 24 C 1.43426 * 114.05498 * 290.03626 * 23 22 21 25 25 C 1.53002 * 109.47052 * 184.99671 * 11 10 9 26 26 C 1.53003 * 117.49611 * 248.74494 * 25 11 10 27 27 C 1.52997 * 117.49609 * 180.08794 * 25 11 10 28 28 H 0.97005 * 119.99955 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00440 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47823 * 59.99712 * 10 9 7 31 31 H 1.09008 * 109.47180 * 299.99759 * 10 9 7 32 32 H 0.97007 * 119.99611 * 334.99812 * 13 11 10 33 33 H 1.07998 * 126.07178 * 359.95185 * 17 16 14 34 34 H 1.08994 * 109.88504 * 224.47928 * 21 20 19 35 35 H 1.09001 * 109.56195 * 103.84931 * 21 20 19 36 36 H 1.09001 * 109.44784 * 287.88692 * 22 21 20 37 37 H 1.09004 * 109.42245 * 167.96160 * 22 21 20 38 38 H 1.08998 * 109.78978 * 290.05111 * 24 23 22 39 39 H 1.09003 * 109.83836 * 169.24430 * 24 23 22 40 40 H 1.08995 * 115.55318 * 34.41903 * 25 11 10 41 41 H 1.08996 * 117.49947 * 0.02562 * 26 25 11 42 42 H 1.09007 * 117.49711 * 145.02377 * 26 25 11 43 43 H 1.09003 * 117.50041 * 214.97876 * 27 25 11 44 44 H 1.09007 * 117.49943 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.4980 -4.8142 -0.9296 13 7 0.1439 -4.6753 1.1330 14 6 -1.0805 -5.2362 1.0816 15 8 -1.4593 -5.7775 0.0598 16 6 -1.9569 -5.1941 2.2581 17 6 -3.1751 -5.8036 2.3991 18 7 -3.6389 -5.5154 3.6180 19 6 -2.7816 -4.7623 4.2461 20 7 -1.7186 -4.5407 3.4408 21 6 -0.5650 -3.7231 3.8243 22 6 -0.9557 -2.8894 5.0522 23 8 -1.5813 -3.7312 6.0248 24 6 -2.8831 -4.1972 5.6439 25 6 1.8246 -6.1411 0.1289 26 6 1.8345 -7.0700 -1.0868 27 6 1.0021 -7.4310 0.1460 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0002 30 1 2.6841 -3.7142 0.8921 31 1 2.6854 -3.7149 -0.8879 32 1 0.4161 -4.1760 1.9189 33 1 -3.6727 -6.4095 1.6564 34 1 -0.2899 -3.0617 3.0028 35 1 0.2756 -4.3714 4.0720 36 1 -1.6494 -2.1041 4.7519 37 1 -0.0619 -2.4385 5.4835 38 1 -3.5902 -3.3677 5.6560 39 1 -3.2142 -4.9742 6.3329 40 1 2.7231 -6.1090 0.7451 41 1 1.2994 -6.7396 -1.9770 42 1 2.7395 -7.6493 -1.2702 43 1 1.3596 -8.2477 0.7731 44 1 -0.0812 -7.3382 0.0673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754445160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:39 Heat of formation + Delta-G solvation = 8.692508 kcal Electronic energy + Delta-G solvation = -27972.868795 eV Core-core repulsion = 24120.048277 eV Total energy + Delta-G solvation = -3852.820518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.69148 -40.99658 -39.38234 -38.41918 -36.70434 -35.78578 -34.73185 -33.04942 -31.83793 -31.04388 -29.75093 -27.29227 -25.98123 -25.18515 -24.11308 -23.21093 -23.05843 -21.85454 -21.41912 -20.84192 -19.36903 -18.93547 -18.08914 -17.50550 -17.40074 -16.76441 -16.65169 -16.54821 -16.30099 -15.98913 -15.85617 -15.38097 -15.16841 -15.07276 -14.87592 -14.49451 -14.35253 -13.87676 -13.71697 -13.22775 -12.96276 -12.83379 -12.74429 -12.56727 -12.37454 -12.31846 -12.09411 -11.87286 -11.71428 -11.41621 -11.20398 -11.18229 -11.03338 -10.94317 -10.83890 -10.19350 -9.61712 -9.05775 -7.96376 -5.27006 0.10081 1.27895 1.47905 1.49938 1.57586 1.59269 1.93013 2.15779 2.54017 2.56691 2.92697 2.95797 3.23760 3.38043 3.44300 3.51940 3.78983 3.81145 3.91912 4.04812 4.06560 4.12716 4.24243 4.28095 4.33705 4.38508 4.44101 4.53851 4.56544 4.64755 4.77585 4.82781 4.84325 5.00375 5.04500 5.24422 5.27203 5.30489 5.42319 5.50329 5.66229 5.84121 6.22728 6.31296 6.70356 6.99450 7.30851 8.01427 8.26367 9.26079 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008977 B = 0.005297 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.493268 B = 5284.258865 C = 7482.723824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.294 1.294 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.175 3.825 12 H 0.063 0.937 13 N -0.703 5.703 14 C 0.597 3.403 15 O -0.558 6.558 16 C -0.092 4.092 17 C 0.051 3.949 18 N -0.500 5.500 19 C 0.191 3.809 20 N -0.435 5.435 21 C 0.050 3.950 22 C 0.053 3.947 23 O -0.372 6.372 24 C 0.147 3.853 25 C -0.167 4.167 26 C -0.159 4.159 27 C -0.183 4.183 28 H 0.250 0.750 29 H 0.372 0.628 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.402 0.598 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -11.216 11.941 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.222 1.222 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.070 3.930 12 H 0.081 0.919 13 N -0.356 5.356 14 C 0.384 3.616 15 O -0.437 6.437 16 C -0.208 4.208 17 C -0.103 4.103 18 N -0.220 5.220 19 C -0.073 4.073 20 N -0.119 5.119 21 C -0.072 4.072 22 C -0.024 4.024 23 O -0.289 6.289 24 C 0.069 3.931 25 C -0.186 4.186 26 C -0.196 4.196 27 C -0.220 4.220 28 H 0.058 0.942 29 H 0.204 0.796 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.241 0.759 33 H 0.208 0.792 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.170 0.830 38 H 0.126 0.874 39 H 0.169 0.831 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.137 0.863 43 H 0.124 0.876 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.326 -11.694 11.747 16.579 hybrid contribution 0.539 1.592 -0.966 1.939 sum 0.865 -10.102 10.781 14.799 Atomic orbital electron populations 1.69833 1.06646 1.25961 1.59361 1.25507 0.96201 1.00913 1.03561 0.85183 0.77934 0.79677 0.77173 1.22158 1.22402 1.18927 1.19610 0.91619 0.84842 1.41292 0.90097 1.42524 1.05493 1.00934 1.89630 1.21062 0.93185 0.83604 0.99855 1.20692 0.89507 0.93927 0.88864 0.91888 1.46111 1.14260 1.54024 1.21157 1.16917 0.80924 0.78133 0.85577 1.90758 1.74804 1.46931 1.31229 1.21019 1.01438 1.09206 0.89105 1.22906 0.91678 1.00876 0.94858 1.69836 1.29230 1.16552 1.06373 1.24947 0.84785 0.99575 0.97949 1.45409 1.18022 1.37231 1.11259 1.23223 0.87623 0.95509 1.00822 1.23132 1.01302 0.91090 0.86867 1.88162 1.31395 1.67309 1.42014 1.21674 0.85878 1.00373 0.85147 1.22590 1.01853 0.89769 1.04395 1.23002 1.02655 1.02159 0.91799 1.23103 0.98913 0.97898 1.02108 0.94167 0.79634 0.93772 0.94046 0.75876 0.79166 0.88356 0.86494 0.91069 0.82973 0.87427 0.83068 0.85688 0.89821 0.86270 0.87649 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.65 13.06 21.65 0.28 -56.37 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.97 43.66 29.55 68.60 2.03 45.69 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.24 -12.50 9.99 84.04 0.84 -11.66 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -34.90 5.43 -343.44 -1.87 -36.77 16 10 C 0.15 5.41 5.80 86.38 0.50 5.91 16 11 C 0.17 5.74 2.45 45.00 0.11 5.85 16 12 H 0.06 2.46 7.26 -2.39 -0.02 2.44 16 13 N -0.70 -22.82 4.48 -446.42 -2.00 -24.82 16 14 C 0.60 21.18 6.95 86.48 0.60 21.78 16 15 O -0.56 -22.51 14.30 -4.28 -0.06 -22.57 16 16 C -0.09 -2.98 6.95 40.23 0.28 -2.70 16 17 C 0.05 1.61 11.68 84.12 0.98 2.59 16 18 N -0.50 -14.95 11.19 -186.48 -2.09 -17.04 16 19 C 0.19 4.94 7.78 138.28 1.08 6.02 16 20 N -0.44 -11.96 3.16 -500.85 -1.59 -13.55 16 21 C 0.05 1.11 5.60 86.54 0.48 1.59 16 22 C 0.05 0.92 6.83 72.14 0.49 1.42 16 23 O -0.37 -6.71 10.78 -148.98 -1.61 -8.32 16 24 C 0.15 2.52 7.29 71.36 0.52 3.04 16 25 C -0.17 -4.35 5.36 -10.79 -0.06 -4.40 16 26 C -0.16 -3.81 10.18 30.62 0.31 -3.49 16 27 C -0.18 -4.78 9.75 30.62 0.30 -4.48 16 28 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 29 H 0.37 19.34 7.33 -92.71 -0.68 18.66 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.40 12.10 4.79 -92.70 -0.44 11.65 16 33 H 0.19 5.51 8.06 -2.91 -0.02 5.48 16 34 H 0.10 2.62 6.68 -2.39 -0.02 2.60 16 35 H 0.12 2.17 8.08 -2.39 -0.02 2.15 16 36 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.13 2.78 8.11 -2.39 -0.02 2.76 16 41 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 42 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.09 2.76 5.26 -2.38 -0.01 2.75 16 Total: -1.00 -69.24 360.26 -0.07 -69.31 By element: Atomic # 1 Polarization: 46.33 SS G_CDS: -0.08 Total: 46.25 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.91 Total: 18.18 kcal Atomic # 7 Polarization: -141.29 SS G_CDS: -7.26 Total: -148.55 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.67 Total: -30.89 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.24 -0.07 -69.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754445160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.001 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds