Wall clock time and date at job start Tue Mar 31 2020 13:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32214 * 120.51012 * 2 1 4 4 C 1.31904 * 121.14397 * 179.75967 * 3 2 1 5 5 N 1.31762 * 122.19611 * 0.53600 * 4 3 2 6 6 C 1.32748 * 120.86571 * 359.73491 * 5 4 3 7 7 O 1.35277 * 120.61347 * 179.97438 * 6 5 4 8 8 C 1.39762 * 120.50825 * 180.28311 * 2 1 3 9 9 C 1.47540 * 120.97993 * 359.95627 * 8 2 1 10 10 O 1.21583 * 120.00406 * 90.00219 * 9 8 2 11 11 N 1.34774 * 119.99674 * 270.00010 * 9 8 2 12 12 C 1.47023 * 125.65082 * 359.68828 * 11 9 8 13 13 C 1.54313 * 107.28010 * 180.96789 * 12 11 9 14 14 C 1.55159 * 102.86162 * 22.53139 * 13 12 11 15 15 H 1.09003 * 111.04199 * 82.38783 * 14 13 12 16 16 C 1.52995 * 111.00696 * 206.23128 * 14 13 12 17 17 C 1.52999 * 109.47357 * 178.64909 * 16 14 13 18 18 N 1.46502 * 109.47145 * 179.97438 * 17 16 14 19 19 C 1.36938 * 119.99946 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31612 * 119.99803 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00018 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47060 * 89.99812 * 23 21 19 25 25 H 1.48495 * 109.46866 * 210.00616 * 23 21 19 26 26 H 1.48500 * 109.47145 * 330.00117 * 23 21 19 27 27 C 1.47430 * 125.64995 * 180.02562 * 11 9 8 28 28 H 1.09002 * 109.47152 * 269.71749 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71850 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71830 * 1 2 3 31 31 H 1.08001 * 118.90623 * 180.24996 * 4 3 2 32 32 H 0.96706 * 114.00255 * 270.02974 * 7 6 5 33 33 H 1.08998 * 109.88338 * 300.51690 * 12 11 9 34 34 H 1.09004 * 109.87987 * 61.68529 * 12 11 9 35 35 H 1.08997 * 110.92729 * 264.11632 * 13 12 11 36 36 H 1.09003 * 110.74412 * 140.85663 * 13 12 11 37 37 H 1.08999 * 109.47175 * 298.64610 * 16 14 13 38 38 H 1.08999 * 109.47306 * 58.64380 * 16 14 13 39 39 H 1.08999 * 109.47183 * 299.99682 * 17 16 14 40 40 H 1.08999 * 109.47344 * 59.99494 * 17 16 14 41 41 H 0.96998 * 119.99847 * 0.02562 * 18 17 16 42 42 H 0.97000 * 120.00336 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.36349 * 274.67137 * 27 11 9 44 44 H 1.09000 * 110.36617 * 36.99098 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 7 4.2116 0.0465 -0.0008 6 6 3.6234 -1.1435 -0.0061 7 8 4.3618 -2.2769 -0.0123 8 6 2.2165 -1.2041 -0.0059 9 6 1.5123 -2.5006 -0.0114 10 8 1.2214 -3.0300 -1.0665 11 7 1.1914 -3.0980 1.1533 12 6 1.4874 -2.5745 2.4949 13 6 0.9571 -3.6031 3.5156 14 6 0.9067 -4.9153 2.6892 15 1 1.8864 -5.3917 2.6511 16 6 -0.1454 -5.8754 3.2479 17 6 -0.1889 -7.1406 2.3887 18 7 -1.1959 -8.0601 2.9241 19 6 -1.4145 -9.2666 2.3144 20 1 -0.8442 -9.5405 1.4391 21 6 -2.3690 -10.1377 2.8215 22 7 -2.5787 -11.2975 2.2357 23 14 -3.3559 -9.6637 4.3350 24 1 -4.5891 -8.9493 3.9181 25 1 -3.7242 -10.8887 5.0893 26 1 -2.5385 -8.7764 5.2009 27 6 0.4917 -4.3881 1.2931 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 4.0088 2.1048 0.0087 32 1 4.5762 -2.6019 -0.8975 33 1 2.5636 -2.4507 2.6155 34 1 0.9837 -1.6186 2.6393 35 1 -0.0385 -3.3283 3.8640 36 1 1.6443 -3.7028 4.3559 37 1 0.1131 -6.1411 4.2729 38 1 -1.1224 -5.3924 3.2332 39 1 -0.4474 -6.8749 1.3637 40 1 0.7881 -7.6236 2.4034 41 1 -1.7083 -7.8140 3.7101 42 1 -3.2455 -11.9064 2.5902 43 1 -0.5875 -4.2410 1.2488 44 1 0.8133 -5.0803 0.5151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754927756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:32 Heat of formation + Delta-G solvation = -11.106989 kcal Electronic energy + Delta-G solvation = -26716.194760 eV Core-core repulsion = 22862.515672 eV Total energy + Delta-G solvation = -3853.679088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91469 -40.08795 -38.27658 -37.96137 -35.38217 -34.71333 -33.19994 -32.31566 -31.22641 -29.87692 -29.28045 -27.57146 -25.74728 -24.15698 -23.33908 -22.92234 -21.27620 -20.51054 -20.04248 -19.41061 -18.59107 -17.83605 -17.57331 -16.82488 -16.44328 -15.95249 -15.48044 -14.97453 -14.73366 -14.55394 -14.09946 -13.95516 -13.84771 -13.55328 -13.37232 -13.19676 -13.13009 -12.97729 -12.67639 -12.55739 -12.39189 -11.93486 -11.77688 -11.69538 -11.32792 -10.93668 -10.88881 -10.78378 -10.61794 -10.41763 -10.29696 -10.11371 -9.95397 -9.89508 -9.58799 -8.94905 -8.89357 -7.23347 -5.76373 -3.12131 0.06440 0.35319 2.08603 2.58002 2.71222 3.11161 3.36579 3.38966 3.42345 3.44652 3.69671 3.90639 4.31100 4.39201 4.42307 4.58908 4.61787 4.62768 4.77943 4.93659 5.00129 5.11765 5.15235 5.25218 5.33154 5.38535 5.48695 5.55538 5.64198 5.66630 5.68350 5.74602 5.85232 5.93551 6.04321 6.08740 6.23008 6.27257 6.71047 6.74262 6.78812 7.12817 7.44074 7.71777 8.00233 8.42581 9.21732 9.93910 10.13524 11.42119 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.002440 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.260747 B =11474.296383 C =11601.700762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.228 3.772 3 N -0.525 5.525 4 C 0.335 3.665 5 N -0.541 5.541 6 C 0.400 3.600 7 O -0.469 6.469 8 C -0.244 4.244 9 C 0.592 3.408 10 O -0.525 6.525 11 N -0.603 5.603 12 C 0.101 3.899 13 C -0.127 4.127 14 C -0.094 4.094 15 H 0.089 0.911 16 C -0.119 4.119 17 C 0.155 3.845 18 N -0.758 5.758 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.002 3.998 22 N -0.934 5.934 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.109 3.891 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.207 0.793 32 H 0.416 0.584 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.077 0.923 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.794 28.420 -0.956 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 N -0.241 5.241 4 C 0.048 3.952 5 N -0.266 5.266 6 C 0.212 3.788 7 O -0.278 6.278 8 C -0.254 4.254 9 C 0.377 3.623 10 O -0.401 6.401 11 N -0.336 5.336 12 C -0.022 4.022 13 C -0.165 4.165 14 C -0.113 4.113 15 H 0.107 0.893 16 C -0.157 4.157 17 C 0.028 3.972 18 N -0.403 5.403 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.582 5.582 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.012 4.012 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.224 0.776 32 H 0.278 0.722 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.130 28.787 -1.179 31.260 hybrid contribution -0.845 -0.617 0.670 1.243 sum 11.285 28.169 -0.509 30.350 Atomic orbital electron populations 1.20955 0.86831 1.05171 1.04424 1.21823 0.97814 0.85916 0.86291 1.68321 1.10213 1.29280 1.16287 1.25013 0.86232 0.96162 0.87805 1.68093 1.42579 0.98633 1.17293 1.19385 0.85430 0.86017 0.87987 1.84624 1.72465 1.35907 1.34804 1.21742 0.95075 0.96731 1.11804 1.17120 0.78693 0.83391 0.83055 1.90873 1.54336 1.64827 1.30061 1.48438 1.57154 1.22779 1.05254 1.22070 1.00628 0.97665 0.81884 1.22717 1.02434 0.94083 0.97251 1.22338 1.00720 0.94915 0.93360 0.89305 1.21737 0.97791 0.95923 1.00238 1.20665 0.92731 0.88440 0.95408 1.42714 1.44851 1.18728 1.34016 1.19076 1.17149 0.91746 1.09451 0.89227 1.24695 0.99396 0.96307 0.98921 1.69702 1.37078 1.09379 1.42088 0.86517 0.80557 0.77380 0.83885 1.21092 1.21744 1.20356 1.22499 0.96978 0.83423 0.98326 0.88808 0.89515 0.88754 0.77635 0.72200 0.91397 0.91694 0.90052 0.89714 0.91235 0.91563 0.95395 0.95571 0.80721 0.93062 0.90481 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.85 36.01 0.35 -0.49 16 2 C 0.23 2.10 6.86 -81.86 -0.56 1.53 16 3 N -0.52 -4.60 10.36 -10.52 -0.11 -4.70 16 4 C 0.34 2.56 12.27 -92.09 -1.13 1.44 16 5 N -0.54 -5.15 10.45 -14.32 -0.15 -5.29 16 6 C 0.40 4.04 7.85 -16.18 -0.13 3.91 16 7 O -0.47 -4.34 13.10 -17.52 -0.23 -4.57 16 8 C -0.24 -2.55 4.85 -104.56 -0.51 -3.05 16 9 C 0.59 7.26 5.54 -12.47 -0.07 7.19 16 10 O -0.52 -8.24 17.36 5.29 0.09 -8.15 16 11 N -0.60 -6.64 3.33 -171.76 -0.57 -7.21 16 12 C 0.10 0.86 6.46 -3.07 -0.02 0.84 16 13 C -0.13 -1.04 6.42 -24.90 -0.16 -1.20 16 14 C -0.09 -1.01 3.07 -88.48 -0.27 -1.28 16 15 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.12 -1.59 4.84 -26.73 -0.13 -1.72 16 17 C 0.15 2.87 6.11 -4.04 -0.02 2.84 16 18 N -0.76 -17.92 5.41 -59.91 -0.32 -18.24 16 19 C -0.24 -6.99 10.47 -15.06 -0.16 -7.14 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 22 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 23 Si 0.89 22.04 27.74 -169.99 -4.71 17.33 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 27 C 0.11 1.30 5.57 -2.53 -0.01 1.28 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.73 7.18 -51.93 -0.37 0.36 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.21 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.42 2.17 9.06 45.56 0.41 2.58 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.03 0.53 7.46 -51.93 -0.39 0.14 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.36 8.21 5.53 -40.82 -0.23 7.99 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 44 H 0.09 1.18 7.96 -51.93 -0.41 0.76 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -36.42 369.01 -8.22 -44.64 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.64 Total: 5.32 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -2.91 Total: 4.12 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.38 Total: -64.26 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.14 Total: -12.71 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.42 -8.22 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754927756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.529 kcal (2) G-P(sol) polarization free energy of solvation -36.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds