Wall clock time and date at job start Tue Mar 31 2020 13:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32214 * 120.51012 * 2 1 4 4 C 1.31904 * 121.14397 * 179.75967 * 3 2 1 5 5 N 1.31762 * 122.19611 * 0.53600 * 4 3 2 6 6 C 1.32748 * 120.86571 * 359.73491 * 5 4 3 7 7 O 1.35277 * 120.61347 * 179.97438 * 6 5 4 8 8 C 1.39762 * 120.50825 * 180.28311 * 2 1 3 9 9 C 1.47540 * 120.97993 * 359.95627 * 8 2 1 10 10 O 1.21583 * 120.00406 * 90.00219 * 9 8 2 11 11 N 1.34774 * 119.99674 * 270.00010 * 9 8 2 12 12 C 1.47023 * 125.65082 * 359.68828 * 11 9 8 13 13 C 1.54313 * 107.28010 * 180.96789 * 12 11 9 14 14 C 1.55159 * 102.86162 * 22.53139 * 13 12 11 15 15 H 1.09003 * 111.04199 * 82.38783 * 14 13 12 16 16 C 1.52995 * 111.00696 * 206.23128 * 14 13 12 17 17 C 1.52999 * 109.47357 * 178.64909 * 16 14 13 18 18 N 1.46502 * 109.47145 * 179.97438 * 17 16 14 19 19 C 1.36938 * 119.99946 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31612 * 119.99803 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00018 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47060 * 89.99812 * 23 21 19 25 25 H 1.48495 * 109.46866 * 210.00616 * 23 21 19 26 26 H 1.48500 * 109.47145 * 330.00117 * 23 21 19 27 27 C 1.47430 * 125.64995 * 180.02562 * 11 9 8 28 28 H 1.09002 * 109.47152 * 269.71749 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71850 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71830 * 1 2 3 31 31 H 1.08001 * 118.90623 * 180.24996 * 4 3 2 32 32 H 0.96706 * 114.00255 * 270.02974 * 7 6 5 33 33 H 1.08998 * 109.88338 * 300.51690 * 12 11 9 34 34 H 1.09004 * 109.87987 * 61.68529 * 12 11 9 35 35 H 1.08997 * 110.92729 * 264.11632 * 13 12 11 36 36 H 1.09003 * 110.74412 * 140.85663 * 13 12 11 37 37 H 1.08999 * 109.47175 * 298.64610 * 16 14 13 38 38 H 1.08999 * 109.47306 * 58.64380 * 16 14 13 39 39 H 1.08999 * 109.47183 * 299.99682 * 17 16 14 40 40 H 1.08999 * 109.47344 * 59.99494 * 17 16 14 41 41 H 0.96998 * 119.99847 * 0.02562 * 18 17 16 42 42 H 0.97000 * 120.00336 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.36349 * 274.67137 * 27 11 9 44 44 H 1.09000 * 110.36617 * 36.99098 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 7 4.2116 0.0465 -0.0008 6 6 3.6234 -1.1435 -0.0061 7 8 4.3618 -2.2769 -0.0123 8 6 2.2165 -1.2041 -0.0059 9 6 1.5123 -2.5006 -0.0114 10 8 1.2214 -3.0300 -1.0665 11 7 1.1914 -3.0980 1.1533 12 6 1.4874 -2.5745 2.4949 13 6 0.9571 -3.6031 3.5156 14 6 0.9067 -4.9153 2.6892 15 1 1.8864 -5.3917 2.6511 16 6 -0.1454 -5.8754 3.2479 17 6 -0.1889 -7.1406 2.3887 18 7 -1.1959 -8.0601 2.9241 19 6 -1.4145 -9.2666 2.3144 20 1 -0.8442 -9.5405 1.4391 21 6 -2.3690 -10.1377 2.8215 22 7 -2.5787 -11.2975 2.2357 23 14 -3.3559 -9.6637 4.3350 24 1 -4.5891 -8.9493 3.9181 25 1 -3.7242 -10.8887 5.0893 26 1 -2.5385 -8.7764 5.2009 27 6 0.4917 -4.3881 1.2931 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 4.0088 2.1048 0.0087 32 1 4.5762 -2.6019 -0.8975 33 1 2.5636 -2.4507 2.6155 34 1 0.9837 -1.6186 2.6393 35 1 -0.0385 -3.3283 3.8640 36 1 1.6443 -3.7028 4.3559 37 1 0.1131 -6.1411 4.2729 38 1 -1.1224 -5.3924 3.2332 39 1 -0.4474 -6.8749 1.3637 40 1 0.7881 -7.6236 2.4034 41 1 -1.7083 -7.8140 3.7101 42 1 -3.2455 -11.9064 2.5902 43 1 -0.5875 -4.2410 1.2488 44 1 0.8133 -5.0803 0.5151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754927756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:32 Heat of formation + Delta-G solvation = -40.199436 kcal Electronic energy + Delta-G solvation = -26717.456303 eV Core-core repulsion = 22862.515672 eV Total energy + Delta-G solvation = -3854.940631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62174 -40.95610 -39.04480 -38.86193 -37.01293 -35.41173 -34.59263 -33.37445 -32.72230 -30.94912 -29.95182 -28.75965 -26.70493 -25.37455 -24.24936 -23.98468 -22.78044 -21.42862 -20.96925 -20.08019 -19.63335 -19.27771 -18.69051 -17.59810 -17.27295 -16.82637 -16.55903 -16.19463 -15.96625 -15.74796 -15.35854 -15.02441 -14.81759 -14.49182 -14.47431 -14.24420 -13.98602 -13.91154 -13.75922 -13.60696 -13.19695 -13.18451 -13.09139 -12.88317 -12.51164 -12.36947 -12.05244 -11.94031 -11.81690 -11.58720 -11.53913 -11.49229 -11.20811 -10.95957 -10.70301 -10.58039 -9.85087 -9.30463 -8.03170 -5.37644 -0.60854 -0.32758 1.17432 1.38278 1.43687 1.51111 1.72890 2.07464 2.44506 2.49307 2.84281 3.05607 3.12548 3.28007 3.48323 3.55947 3.66920 3.73347 3.97777 4.02546 4.15178 4.20186 4.28351 4.43188 4.47738 4.51579 4.55104 4.56450 4.70673 4.79504 4.85191 4.86953 4.92605 5.04778 5.10284 5.11738 5.23244 5.34827 5.44160 5.60280 5.74894 6.20804 6.21602 6.25977 6.79365 6.80432 7.07997 7.83528 8.04273 9.18589 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.002440 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.260747 B =11474.296383 C =11601.700762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.229 3.771 3 N -0.530 5.530 4 C 0.340 3.660 5 N -0.554 5.554 6 C 0.398 3.602 7 O -0.480 6.480 8 C -0.260 4.260 9 C 0.594 3.406 10 O -0.571 6.571 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.115 4.115 14 C -0.086 4.086 15 H 0.086 0.914 16 C -0.103 4.103 17 C 0.149 3.851 18 N -0.759 5.759 19 C -0.240 4.240 20 H 0.050 0.950 21 C -0.069 4.069 22 N -0.986 5.986 23 Si 0.963 3.037 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.245 1.245 27 C 0.107 3.893 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.245 0.755 32 H 0.430 0.570 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.369 0.631 42 H 0.258 0.742 43 H 0.077 0.923 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.835 31.731 1.709 33.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.083 3.917 3 N -0.247 5.247 4 C 0.054 3.946 5 N -0.280 5.280 6 C 0.210 3.790 7 O -0.292 6.292 8 C -0.269 4.269 9 C 0.381 3.619 10 O -0.451 6.451 11 N -0.332 5.332 12 C -0.023 4.023 13 C -0.152 4.152 14 C -0.106 4.106 15 H 0.104 0.896 16 C -0.141 4.141 17 C 0.023 3.977 18 N -0.405 5.405 19 C -0.371 4.371 20 H 0.068 0.932 21 C -0.261 4.261 22 N -0.637 5.637 23 Si 0.789 3.211 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.169 1.169 27 C -0.015 4.015 28 H 0.130 0.870 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.261 0.739 32 H 0.294 0.706 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.215 32.157 1.508 34.432 hybrid contribution -0.755 -1.637 -0.286 1.826 sum 11.460 30.520 1.222 32.624 Atomic orbital electron populations 1.21001 0.85699 1.04967 1.05499 1.22105 0.98645 0.85637 0.85336 1.68432 1.10706 1.28723 1.16804 1.25823 0.86079 0.96977 0.85698 1.68198 1.42836 0.98769 1.18180 1.19498 0.85421 0.86435 0.87691 1.84570 1.72408 1.36000 1.36197 1.21591 0.95204 0.96078 1.14032 1.17385 0.78112 0.83779 0.82629 1.90840 1.56304 1.66208 1.31721 1.48497 1.56345 1.22254 1.06121 1.22248 1.01027 0.98629 0.80358 1.22716 1.03898 0.91552 0.97052 1.22206 0.99561 0.95795 0.93018 0.89603 1.21592 0.99315 0.93590 0.99649 1.20861 0.90846 0.89922 0.96075 1.42708 1.45957 1.17772 1.34086 1.19045 1.16164 0.93633 1.08306 0.93216 1.25647 1.01115 0.96226 1.03067 1.69907 1.38291 1.11039 1.44442 0.85288 0.78965 0.77345 0.79454 1.20252 1.22292 1.16878 1.22431 0.97041 0.83665 0.98400 0.86969 0.91106 0.87491 0.73947 0.70591 0.91333 0.89717 0.88558 0.87713 0.89971 0.90483 0.96323 0.96345 0.79793 0.93287 0.90511 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.85 71.24 0.70 -0.78 16 2 C 0.23 3.88 6.86 42.87 0.29 4.18 16 3 N -0.53 -8.13 10.36 -187.21 -1.94 -10.07 16 4 C 0.34 4.40 12.27 180.86 2.22 6.62 16 5 N -0.55 -9.66 10.45 -312.04 -3.26 -12.92 16 6 C 0.40 7.71 7.85 85.18 0.67 8.38 16 7 O -0.48 -8.76 13.10 -85.62 -1.12 -9.88 16 8 C -0.26 -5.24 4.85 -19.83 -0.10 -5.33 16 9 C 0.59 14.67 5.54 86.70 0.48 15.15 16 10 O -0.57 -18.77 17.36 -3.98 -0.07 -18.84 16 11 N -0.60 -12.75 3.33 -815.58 -2.71 -15.46 16 12 C 0.10 1.44 6.46 86.73 0.56 2.00 16 13 C -0.11 -1.45 6.42 31.78 0.20 -1.25 16 14 C -0.09 -1.69 3.07 -9.41 -0.03 -1.72 16 15 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 16 C -0.10 -2.52 4.84 30.59 0.15 -2.38 16 17 C 0.15 5.48 6.11 86.38 0.53 6.01 16 18 N -0.76 -35.34 5.41 -343.44 -1.86 -37.20 16 19 C -0.24 -14.04 10.47 84.04 0.88 -13.16 16 20 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.99 -64.26 13.97 21.65 0.30 -63.96 16 23 Si 0.96 45.04 27.74 68.60 1.90 46.95 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.24 -10.02 6.52 99.48 0.65 -9.37 16 27 C 0.11 2.51 5.57 86.85 0.48 3.00 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.17 7.18 -2.39 -0.02 1.15 16 30 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.24 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.43 4.59 9.06 -74.05 -0.67 3.92 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.10 1.01 8.04 -2.39 -0.02 0.99 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.02 0.73 7.46 -2.39 -0.02 0.71 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.37 15.84 5.53 -92.71 -0.51 15.33 16 42 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 43 H 0.08 1.80 8.00 -2.39 -0.02 1.78 16 44 H 0.06 1.70 7.96 -2.39 -0.02 1.68 16 Total: -1.00 -81.54 369.01 -1.45 -82.99 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.21 Total: 21.37 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 7.51 Total: 17.02 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -9.47 Total: -139.61 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.19 Total: -28.72 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.95 kcal Total: -81.54 -1.45 -82.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754927756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.791 kcal (2) G-P(sol) polarization free energy of solvation -81.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds