Wall clock time and date at job start Tue Mar 31 2020 13:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32214 * 120.50745 * 2 1 4 4 C 1.31910 * 121.14076 * 179.97438 * 3 2 1 5 5 N 1.31748 * 122.19622 * 359.97438 * 4 3 2 6 6 C 1.32752 * 120.87263 * 359.77335 * 5 4 3 7 7 O 1.35270 * 120.62001 * 180.24237 * 6 5 4 8 8 C 1.39761 * 120.50783 * 179.97438 * 2 1 3 9 9 C 1.47537 * 120.98202 * 0.02562 * 8 2 1 10 10 O 1.21582 * 120.00291 * 89.99993 * 9 8 2 11 11 N 1.34779 * 119.99593 * 269.99749 * 9 8 2 12 12 C 1.47023 * 125.65287 * 359.96422 * 11 9 8 13 13 C 1.54369 * 107.29123 * 178.94019 * 12 11 9 14 14 C 1.55155 * 102.91717 * 337.85719 * 13 12 11 15 15 H 1.08998 * 111.00809 * 277.35828 * 14 13 12 16 16 C 1.53005 * 111.00176 * 153.54989 * 14 13 12 17 17 C 1.53002 * 109.47351 * 178.18001 * 16 14 13 18 18 N 1.46499 * 109.47341 * 179.97438 * 17 16 14 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99632 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99535 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 0.27829 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47425 * 125.64658 * 179.97438 * 11 9 8 28 28 H 1.08992 * 109.47453 * 270.02282 * 1 2 3 29 29 H 1.09001 * 109.47202 * 30.02233 * 1 2 3 30 30 H 1.09005 * 109.47197 * 150.02105 * 1 2 3 31 31 H 1.08000 * 118.90369 * 180.02562 * 4 3 2 32 32 H 0.96706 * 114.00199 * 270.24181 * 7 6 5 33 33 H 1.09002 * 109.87709 * 298.39322 * 12 11 9 34 34 H 1.08995 * 109.88287 * 59.54955 * 12 11 9 35 35 H 1.08997 * 110.75471 * 219.49386 * 13 12 11 36 36 H 1.08994 * 110.70630 * 96.20186 * 13 12 11 37 37 H 1.08997 * 109.47464 * 58.17502 * 16 14 13 38 38 H 1.09002 * 109.47168 * 298.17759 * 16 14 13 39 39 H 1.09005 * 109.47089 * 59.99649 * 17 16 14 40 40 H 1.09002 * 109.46787 * 299.99991 * 17 16 14 41 41 H 0.97004 * 119.99469 * 0.02562 * 18 17 16 42 42 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.36692 * 85.25935 * 27 11 9 44 44 H 1.08998 * 110.46084 * 322.98328 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0466 0.0015 6 6 3.6234 -1.1435 0.0066 7 8 4.3617 -2.2769 0.0126 8 6 2.2165 -1.2041 0.0005 9 6 1.5123 -2.5006 0.0006 10 8 1.2225 -3.0351 -1.0523 11 7 1.1903 -3.0925 1.1678 12 6 1.4798 -2.5598 2.5073 13 6 0.9047 -3.5600 3.5329 14 6 -0.1719 -4.3179 2.7122 15 1 -1.1049 -3.7554 2.6778 16 6 -0.4021 -5.7222 3.2743 17 6 -1.4999 -6.4204 2.4691 18 7 -1.7199 -7.7652 3.0070 19 6 -2.6618 -8.5829 2.4420 20 1 -3.2423 -8.2366 1.5997 21 6 -2.8698 -9.8573 2.9514 22 7 -3.7756 -10.6431 2.4087 23 14 -1.8703 -10.4539 4.4123 24 1 -0.6374 -11.1249 3.9277 25 1 -1.5010 -9.2959 5.2655 26 1 -2.6780 -11.4152 5.2053 27 6 0.4895 -4.3813 1.3130 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 4.0088 2.1049 0.0009 32 1 4.5803 -2.6086 -0.8691 33 1 2.5572 -2.4663 2.6440 34 1 1.0027 -1.5877 2.6307 35 1 0.4502 -3.0339 4.3723 36 1 1.6787 -4.2448 3.8791 37 1 -0.7073 -5.6502 4.3182 38 1 0.5212 -6.2974 3.2046 39 1 -1.1947 -6.4924 1.4251 40 1 -2.4232 -5.8452 2.5388 41 1 -1.1982 -8.0763 3.7633 42 1 -3.9213 -11.5336 2.7649 43 1 1.1999 -5.2067 1.2665 44 1 -0.2700 -4.4914 0.5390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754927757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:36 Heat of formation + Delta-G solvation = -11.234592 kcal Electronic energy + Delta-G solvation = -26707.003427 eV Core-core repulsion = 22853.318806 eV Total energy + Delta-G solvation = -3853.684621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91820 -40.08968 -38.28911 -37.96123 -35.38555 -34.71380 -33.20353 -32.31896 -31.22802 -29.87640 -29.27481 -27.58527 -25.75433 -24.14363 -23.33924 -22.92631 -21.26734 -20.52294 -20.06570 -19.42281 -18.58454 -17.85089 -17.58253 -16.81653 -16.49406 -15.82700 -15.56359 -14.98791 -14.70876 -14.55881 -14.09669 -13.96748 -13.85166 -13.52619 -13.36309 -13.26473 -13.16540 -12.90552 -12.67794 -12.56254 -12.39505 -11.93984 -11.78109 -11.69464 -11.33360 -10.93941 -10.88987 -10.78761 -10.62817 -10.42140 -10.29646 -10.11602 -9.95848 -9.89648 -9.59040 -8.95241 -8.89503 -7.23546 -5.76636 -3.12403 0.06113 0.35095 2.08294 2.57566 2.70983 3.10538 3.36676 3.39231 3.42597 3.44772 3.69554 3.90144 4.30860 4.38753 4.42815 4.58216 4.59055 4.66156 4.77060 4.89530 5.02936 5.13663 5.15909 5.24829 5.33059 5.39185 5.47771 5.54983 5.63312 5.67888 5.68446 5.75208 5.85136 5.92226 6.03430 6.08419 6.22328 6.27058 6.70391 6.73695 6.77435 7.12418 7.43856 7.71375 7.99821 8.42374 9.21457 9.93705 10.13260 11.41814 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.002432 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.046565 B =11511.569171 C =11648.093081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.228 3.772 3 N -0.525 5.525 4 C 0.335 3.665 5 N -0.541 5.541 6 C 0.399 3.601 7 O -0.470 6.470 8 C -0.244 4.244 9 C 0.592 3.408 10 O -0.525 6.525 11 N -0.603 5.603 12 C 0.100 3.900 13 C -0.127 4.127 14 C -0.093 4.093 15 H 0.089 0.911 16 C -0.119 4.119 17 C 0.155 3.845 18 N -0.758 5.758 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.002 3.998 22 N -0.934 5.934 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.277 1.277 26 H -0.291 1.291 27 C 0.109 3.891 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.207 0.793 32 H 0.416 0.584 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.076 0.924 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.579 26.374 -1.455 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 N -0.241 5.241 4 C 0.048 3.952 5 N -0.266 5.266 6 C 0.211 3.789 7 O -0.279 6.279 8 C -0.253 4.253 9 C 0.377 3.623 10 O -0.401 6.401 11 N -0.336 5.336 12 C -0.023 4.023 13 C -0.165 4.165 14 C -0.113 4.113 15 H 0.107 0.893 16 C -0.157 4.157 17 C 0.028 3.972 18 N -0.403 5.403 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.582 5.582 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.203 1.203 26 H -0.217 1.217 27 C -0.013 4.013 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.224 0.776 32 H 0.278 0.722 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.707 26.853 -1.665 31.154 hybrid contribution 0.572 -1.383 0.632 1.625 sum 16.279 25.470 -1.033 30.246 Atomic orbital electron populations 1.20959 0.86768 1.05193 1.04483 1.21834 0.97846 0.85892 0.86210 1.68327 1.10201 1.29283 1.16254 1.25011 0.86243 0.96153 0.87799 1.68084 1.42602 0.98646 1.17299 1.19383 0.85447 0.86029 0.88023 1.84620 1.72452 1.35882 1.34896 1.21743 0.95064 0.96747 1.11787 1.17120 0.78777 0.83332 0.83026 1.90872 1.54237 1.64710 1.30294 1.48429 1.57229 1.22702 1.05242 1.22084 1.00526 0.97730 0.81926 1.22731 0.98834 0.97731 0.97197 1.22338 0.98190 0.97415 0.93367 0.89288 1.21742 1.00344 0.93306 1.00345 1.20662 0.94863 0.86050 0.95627 1.42716 1.46243 1.13029 1.38329 1.19071 1.11830 0.94354 1.12166 0.89224 1.24696 0.98859 0.96597 0.99168 1.69711 1.35974 1.09163 1.43397 0.86519 0.80011 0.78348 0.83467 1.21092 1.20349 1.21738 1.22496 0.96302 0.84253 0.98205 0.88748 0.88744 0.89485 0.77634 0.72237 0.91435 0.91660 0.89667 0.90060 0.91221 0.91548 0.95422 0.95580 0.80710 0.93065 0.90553 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.85 36.01 0.35 -0.50 16 2 C 0.23 2.10 6.86 -81.86 -0.56 1.54 16 3 N -0.52 -4.60 10.36 -10.53 -0.11 -4.71 16 4 C 0.34 2.56 12.27 -92.09 -1.13 1.43 16 5 N -0.54 -5.13 10.45 -14.32 -0.15 -5.28 16 6 C 0.40 4.01 7.85 -16.18 -0.13 3.88 16 7 O -0.47 -4.30 13.10 -17.50 -0.23 -4.53 16 8 C -0.24 -2.54 4.85 -104.56 -0.51 -3.05 16 9 C 0.59 7.24 5.54 -12.47 -0.07 7.17 16 10 O -0.52 -8.22 17.36 5.29 0.09 -8.13 16 11 N -0.60 -6.61 3.33 -171.73 -0.57 -7.18 16 12 C 0.10 0.86 6.47 -3.04 -0.02 0.84 16 13 C -0.13 -1.04 6.43 -24.87 -0.16 -1.20 16 14 C -0.09 -0.98 3.03 -88.48 -0.27 -1.25 16 15 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 16 C -0.12 -1.60 4.84 -26.73 -0.13 -1.72 16 17 C 0.16 2.85 6.14 -4.04 -0.02 2.83 16 18 N -0.76 -17.89 5.41 -59.91 -0.32 -18.21 16 19 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 22 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 23 Si 0.89 22.07 27.74 -169.99 -4.71 17.36 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 C 0.11 1.29 5.71 -2.54 -0.01 1.27 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.74 7.18 -51.93 -0.37 0.37 16 31 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.42 2.12 9.06 45.56 0.41 2.53 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 39 H 0.03 0.52 7.59 -51.93 -0.39 0.13 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.36 8.23 5.53 -40.82 -0.23 8.00 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 44 H 0.09 1.15 8.00 -51.93 -0.42 0.73 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -36.38 369.20 -8.22 -44.60 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.64 Total: 5.19 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.91 Total: 4.10 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.38 Total: -64.16 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.14 Total: -12.65 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.38 -8.22 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754927757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.366 kcal (2) G-P(sol) polarization free energy of solvation -36.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds