Wall clock time and date at job start Tue Mar 31 2020 13:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32214 * 120.50745 * 2 1 4 4 C 1.31910 * 121.14076 * 179.97438 * 3 2 1 5 5 N 1.31748 * 122.19622 * 359.97438 * 4 3 2 6 6 C 1.32752 * 120.87263 * 359.77335 * 5 4 3 7 7 O 1.35270 * 120.62001 * 180.24237 * 6 5 4 8 8 C 1.39761 * 120.50783 * 179.97438 * 2 1 3 9 9 C 1.47537 * 120.98202 * 0.02562 * 8 2 1 10 10 O 1.21582 * 120.00291 * 89.99993 * 9 8 2 11 11 N 1.34779 * 119.99593 * 269.99749 * 9 8 2 12 12 C 1.47023 * 125.65287 * 359.96422 * 11 9 8 13 13 C 1.54369 * 107.29123 * 178.94019 * 12 11 9 14 14 C 1.55155 * 102.91717 * 337.85719 * 13 12 11 15 15 H 1.08998 * 111.00809 * 277.35828 * 14 13 12 16 16 C 1.53005 * 111.00176 * 153.54989 * 14 13 12 17 17 C 1.53002 * 109.47351 * 178.18001 * 16 14 13 18 18 N 1.46499 * 109.47341 * 179.97438 * 17 16 14 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99632 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99535 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 0.27829 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47425 * 125.64658 * 179.97438 * 11 9 8 28 28 H 1.08992 * 109.47453 * 270.02282 * 1 2 3 29 29 H 1.09001 * 109.47202 * 30.02233 * 1 2 3 30 30 H 1.09005 * 109.47197 * 150.02105 * 1 2 3 31 31 H 1.08000 * 118.90369 * 180.02562 * 4 3 2 32 32 H 0.96706 * 114.00199 * 270.24181 * 7 6 5 33 33 H 1.09002 * 109.87709 * 298.39322 * 12 11 9 34 34 H 1.08995 * 109.88287 * 59.54955 * 12 11 9 35 35 H 1.08997 * 110.75471 * 219.49386 * 13 12 11 36 36 H 1.08994 * 110.70630 * 96.20186 * 13 12 11 37 37 H 1.08997 * 109.47464 * 58.17502 * 16 14 13 38 38 H 1.09002 * 109.47168 * 298.17759 * 16 14 13 39 39 H 1.09005 * 109.47089 * 59.99649 * 17 16 14 40 40 H 1.09002 * 109.46787 * 299.99991 * 17 16 14 41 41 H 0.97004 * 119.99469 * 0.02562 * 18 17 16 42 42 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.36692 * 85.25935 * 27 11 9 44 44 H 1.08998 * 110.46084 * 322.98328 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0466 0.0015 6 6 3.6234 -1.1435 0.0066 7 8 4.3617 -2.2769 0.0126 8 6 2.2165 -1.2041 0.0005 9 6 1.5123 -2.5006 0.0006 10 8 1.2225 -3.0351 -1.0523 11 7 1.1903 -3.0925 1.1678 12 6 1.4798 -2.5598 2.5073 13 6 0.9047 -3.5600 3.5329 14 6 -0.1719 -4.3179 2.7122 15 1 -1.1049 -3.7554 2.6778 16 6 -0.4021 -5.7222 3.2743 17 6 -1.4999 -6.4204 2.4691 18 7 -1.7199 -7.7652 3.0070 19 6 -2.6618 -8.5829 2.4420 20 1 -3.2423 -8.2366 1.5997 21 6 -2.8698 -9.8573 2.9514 22 7 -3.7756 -10.6431 2.4087 23 14 -1.8703 -10.4539 4.4123 24 1 -0.6374 -11.1249 3.9277 25 1 -1.5010 -9.2959 5.2655 26 1 -2.6780 -11.4152 5.2053 27 6 0.4895 -4.3813 1.3130 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 4.0088 2.1049 0.0009 32 1 4.5803 -2.6086 -0.8691 33 1 2.5572 -2.4663 2.6440 34 1 1.0027 -1.5877 2.6307 35 1 0.4502 -3.0339 4.3723 36 1 1.6787 -4.2448 3.8791 37 1 -0.7073 -5.6502 4.3182 38 1 0.5212 -6.2974 3.2046 39 1 -1.1947 -6.4924 1.4251 40 1 -2.4232 -5.8452 2.5388 41 1 -1.1982 -8.0763 3.7633 42 1 -3.9213 -11.5336 2.7649 43 1 1.1999 -5.2067 1.2665 44 1 -0.2700 -4.4914 0.5390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754927757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:35 Heat of formation + Delta-G solvation = -40.238346 kcal Electronic energy + Delta-G solvation = -26708.261125 eV Core-core repulsion = 22853.318806 eV Total energy + Delta-G solvation = -3854.942319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62313 -40.95377 -39.04415 -38.85949 -37.01105 -35.41117 -34.58968 -33.37299 -32.72171 -30.94327 -29.95409 -28.76911 -26.70237 -25.36711 -24.24047 -23.98434 -22.77267 -21.42990 -20.98000 -20.08586 -19.63671 -19.26486 -18.70094 -17.60177 -17.29913 -16.73396 -16.56154 -16.25846 -15.95152 -15.73485 -15.36392 -15.01968 -14.81899 -14.51064 -14.46122 -14.22807 -14.02483 -13.94277 -13.67835 -13.62943 -13.19902 -13.17628 -13.08642 -12.88208 -12.51917 -12.37974 -12.05140 -11.93954 -11.81130 -11.58867 -11.54028 -11.49003 -11.20630 -10.95784 -10.70489 -10.58006 -9.85354 -9.29992 -8.03143 -5.37341 -0.60942 -0.32876 1.17408 1.38074 1.43076 1.50514 1.72641 2.07676 2.44102 2.49078 2.84257 3.05526 3.12538 3.28168 3.48518 3.56348 3.68285 3.72160 3.98428 4.01951 4.15408 4.18869 4.28903 4.43476 4.48792 4.51470 4.55120 4.56428 4.71466 4.79968 4.85325 4.87632 4.92862 5.04691 5.10541 5.11703 5.23201 5.35345 5.44862 5.60246 5.75229 6.21022 6.21416 6.25864 6.79273 6.80277 7.08139 7.84132 8.04054 9.18548 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.002432 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.046565 B =11511.569171 C =11648.093081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.229 3.771 3 N -0.531 5.531 4 C 0.340 3.660 5 N -0.554 5.554 6 C 0.398 3.602 7 O -0.480 6.480 8 C -0.260 4.260 9 C 0.594 3.406 10 O -0.571 6.571 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.115 4.115 14 C -0.084 4.084 15 H 0.096 0.904 16 C -0.105 4.105 17 C 0.149 3.851 18 N -0.760 5.760 19 C -0.239 4.239 20 H 0.051 0.949 21 C -0.069 4.069 22 N -0.986 5.986 23 Si 0.962 3.038 24 H -0.278 1.278 25 H -0.245 1.245 26 H -0.296 1.296 27 C 0.106 3.894 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.245 0.755 32 H 0.430 0.570 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.023 0.977 41 H 0.368 0.632 42 H 0.258 0.742 43 H 0.068 0.932 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.537 28.703 1.063 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.083 3.917 3 N -0.247 5.247 4 C 0.054 3.946 5 N -0.280 5.280 6 C 0.210 3.790 7 O -0.292 6.292 8 C -0.269 4.269 9 C 0.381 3.619 10 O -0.451 6.451 11 N -0.332 5.332 12 C -0.023 4.023 13 C -0.153 4.153 14 C -0.103 4.103 15 H 0.114 0.886 16 C -0.143 4.143 17 C 0.023 3.977 18 N -0.406 5.406 19 C -0.370 4.370 20 H 0.070 0.930 21 C -0.260 4.260 22 N -0.637 5.637 23 Si 0.788 3.212 24 H -0.205 1.205 25 H -0.169 1.169 26 H -0.222 1.222 27 C -0.016 4.016 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.294 0.706 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.042 0.958 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.704 29.245 0.875 34.198 hybrid contribution -0.057 -2.027 -0.274 2.046 sum 17.647 27.218 0.601 32.444 Atomic orbital electron populations 1.20999 0.85747 1.04942 1.05512 1.22098 0.98619 0.85663 0.85325 1.68435 1.10722 1.28725 1.16789 1.25821 0.86068 0.96989 0.85694 1.68192 1.42832 0.98778 1.18165 1.19490 0.85407 0.86470 0.87663 1.84567 1.72362 1.35920 1.36303 1.21592 0.95230 0.96066 1.14009 1.17384 0.78186 0.83721 0.82605 1.90839 1.56189 1.66092 1.31941 1.48489 1.56393 1.22215 1.06098 1.22260 1.00974 0.98619 0.80418 1.22725 0.97918 0.97408 0.97239 1.22213 0.99331 0.96154 0.92633 0.88600 1.21603 0.98317 0.94244 1.00144 1.20868 0.96699 0.84137 0.95950 1.42730 1.45156 1.14308 1.38424 1.19049 1.11886 0.95113 1.10949 0.93045 1.25629 1.00579 0.96840 1.02995 1.69911 1.38428 1.09642 1.45672 0.85310 0.77954 0.78449 0.79473 1.20466 1.16893 1.22246 1.22425 0.95787 0.84716 0.98679 0.86985 0.87510 0.91127 0.73947 0.70584 0.91203 0.89873 0.87084 0.89541 0.89819 0.91119 0.96448 0.95845 0.79876 0.93311 0.91421 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.85 71.24 0.70 -0.83 16 2 C 0.23 3.91 6.86 42.87 0.29 4.21 16 3 N -0.53 -8.17 10.36 -187.21 -1.94 -10.11 16 4 C 0.34 4.38 12.27 180.86 2.22 6.60 16 5 N -0.55 -9.55 10.45 -312.05 -3.26 -12.81 16 6 C 0.40 7.61 7.85 85.18 0.67 8.28 16 7 O -0.48 -8.52 13.10 -85.55 -1.12 -9.64 16 8 C -0.26 -5.22 4.85 -19.83 -0.10 -5.31 16 9 C 0.59 14.61 5.54 86.70 0.48 15.09 16 10 O -0.57 -18.69 17.36 -3.97 -0.07 -18.76 16 11 N -0.60 -12.70 3.33 -815.50 -2.71 -15.42 16 12 C 0.10 1.44 6.47 86.74 0.56 2.00 16 13 C -0.12 -1.46 6.43 31.80 0.20 -1.26 16 14 C -0.08 -1.57 3.03 -9.41 -0.03 -1.60 16 15 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 16 C -0.10 -2.56 4.84 30.60 0.15 -2.41 16 17 C 0.15 5.42 6.14 86.38 0.53 5.95 16 18 N -0.76 -35.30 5.41 -343.45 -1.86 -37.16 16 19 C -0.24 -13.89 10.47 84.03 0.88 -13.01 16 20 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 22 N -0.99 -64.13 13.97 21.65 0.30 -63.83 16 23 Si 0.96 45.20 27.74 68.60 1.90 47.10 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.24 -10.08 6.52 99.48 0.65 -9.44 16 26 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 27 C 0.11 2.49 5.71 86.85 0.50 2.98 16 28 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.20 7.18 -2.38 -0.02 1.18 16 31 H 0.24 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.43 4.35 9.06 -74.05 -0.67 3.67 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.07 8.04 -2.39 -0.02 1.05 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 39 H 0.02 0.67 7.59 -2.38 -0.02 0.65 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.37 15.88 5.53 -92.71 -0.51 15.37 16 42 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 43 H 0.07 1.69 7.96 -2.39 -0.02 1.67 16 44 H 0.06 1.79 8.00 -2.39 -0.02 1.77 16 Total: -1.00 -81.18 369.20 -1.43 -82.62 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.21 Total: 20.98 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 7.53 Total: 17.02 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -9.47 Total: -139.33 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.19 Total: -28.39 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -81.18 -1.43 -82.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754927757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.381 kcal (2) G-P(sol) polarization free energy of solvation -81.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds