Wall clock time and date at job start Tue Mar 31 2020 13:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32219 * 120.51548 * 2 1 4 4 C 1.31903 * 121.14539 * 180.29238 * 3 2 1 5 5 N 1.31756 * 122.19512 * 359.72050 * 4 3 2 6 6 C 1.32749 * 120.87148 * 0.02562 * 5 4 3 7 7 O 1.35281 * 120.61591 * 179.97438 * 6 5 4 8 8 C 1.39773 * 120.50556 * 179.76376 * 2 1 3 9 9 C 1.47535 * 120.98148 * 359.97438 * 8 2 1 10 10 O 1.21582 * 119.99607 * 269.72065 * 9 8 2 11 11 N 1.34771 * 119.99868 * 89.72125 * 9 8 2 12 12 C 1.46932 * 120.62744 * 180.02562 * 11 9 8 13 13 C 1.53192 * 108.77844 * 126.40951 * 12 11 9 14 14 C 1.53045 * 109.30943 * 54.63390 * 13 12 11 15 15 C 1.53003 * 109.45779 * 178.62811 * 14 13 12 16 16 N 1.46490 * 109.46384 * 58.65283 * 14 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.53044 * 109.52582 * 298.63661 * 14 13 12 26 26 C 1.46920 * 120.63299 * 0.02562 * 11 9 8 27 27 H 1.08998 * 109.47015 * 270.24221 * 1 2 3 28 28 H 1.09003 * 109.47160 * 30.23566 * 1 2 3 29 29 H 1.08997 * 109.47400 * 150.24178 * 1 2 3 30 30 H 1.08000 * 118.90222 * 179.70335 * 4 3 2 31 31 H 0.96696 * 114.00134 * 270.02425 * 7 6 5 32 32 H 1.08996 * 109.58846 * 6.61888 * 12 11 9 33 33 H 1.09003 * 109.57689 * 246.19391 * 12 11 9 34 34 H 1.08995 * 109.49437 * 294.68286 * 13 12 11 35 35 H 1.08996 * 109.52274 * 174.59662 * 13 12 11 36 36 H 1.08997 * 109.46965 * 300.02851 * 15 14 13 37 37 H 1.09002 * 109.46920 * 60.02578 * 15 14 13 38 38 H 1.08994 * 109.46997 * 180.02562 * 15 14 13 39 39 H 0.97000 * 120.00577 * 359.97352 * 16 14 13 40 40 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 41 41 H 1.09000 * 109.49970 * 181.31217 * 25 14 13 42 42 H 1.09001 * 109.50257 * 301.41366 * 25 14 13 43 43 H 1.08998 * 109.58779 * 353.38124 * 26 11 9 44 44 H 1.09004 * 109.58787 * 113.65837 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1391 0.0000 4 6 3.4973 1.1536 -0.0058 5 7 4.2115 0.0464 -0.0063 6 6 3.6233 -1.1437 -0.0016 7 8 4.3617 -2.2772 -0.0027 8 6 2.2165 -1.2042 0.0050 9 6 1.5122 -2.5006 0.0109 10 8 1.2270 -3.0326 1.0663 11 7 1.1851 -3.0951 -1.1536 12 6 0.4832 -4.3859 -1.1638 13 6 -0.7771 -4.2550 -2.0247 14 6 -0.3906 -3.7387 -3.4126 15 6 -1.6427 -3.6392 -4.2863 16 7 0.5628 -4.6640 -4.0296 17 6 1.0529 -4.4077 -5.2823 18 1 0.7369 -3.5232 -5.8153 19 6 1.9559 -5.2848 -5.8673 20 7 2.3407 -6.3631 -5.2179 21 14 2.6250 -4.9347 -7.5758 22 1 3.5640 -6.0153 -7.9707 23 1 1.5014 -4.8773 -8.5452 24 1 3.3409 -3.6338 -7.5702 25 6 0.2519 -2.3557 -3.2832 26 6 1.5236 -2.4648 -2.4368 27 1 -0.3633 0.0043 1.0276 28 1 -0.3634 0.8879 -0.5175 29 1 -0.3634 -0.8921 -0.5100 30 1 4.0088 2.1047 -0.0104 31 1 4.5729 -2.6082 -0.8864 32 1 0.2039 -4.6580 -0.1460 33 1 1.1346 -5.1525 -1.5836 34 1 -1.4673 -3.5543 -1.5550 35 1 -1.2563 -5.2294 -2.1195 36 1 -2.1003 -4.6241 -4.3789 37 1 -2.3522 -2.9506 -3.8273 38 1 -1.3676 -3.2719 -5.2749 39 1 0.8470 -5.4583 -3.5509 40 1 1.9935 -6.5447 -4.3306 41 1 0.5058 -1.9783 -4.2738 42 1 -0.4480 -1.6729 -2.8016 43 1 1.9307 -1.4695 -2.2590 44 1 2.2617 -3.0734 -2.9594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755131763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:19 Heat of formation + Delta-G solvation = -8.555050 kcal Electronic energy + Delta-G solvation = -28674.335091 eV Core-core repulsion = 24820.766663 eV Total energy + Delta-G solvation = -3853.568428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68556 -39.89043 -38.04631 -37.85793 -34.80807 -34.40641 -32.78390 -32.16575 -30.86060 -29.16366 -28.71357 -27.82705 -25.46063 -23.85591 -23.16483 -23.04709 -22.73828 -20.29619 -19.12716 -18.67535 -18.29787 -17.39608 -17.09580 -16.57998 -16.07505 -15.38006 -15.24087 -14.54888 -14.47789 -14.31303 -13.91019 -13.75519 -13.64270 -13.63213 -13.11100 -13.06954 -12.89071 -12.69110 -12.40115 -12.29584 -11.70658 -11.52623 -11.49912 -11.35655 -10.95650 -10.89000 -10.66106 -10.60469 -10.40339 -10.06585 -9.99220 -9.97657 -9.66915 -9.50291 -9.18666 -9.04340 -8.48269 -7.13749 -6.17419 -3.19135 0.36834 0.63722 2.42540 2.92646 3.07705 3.34802 3.44315 3.46664 3.64545 3.68854 3.98116 4.29634 4.57351 4.69008 4.85634 4.99531 5.02584 5.12663 5.19494 5.26037 5.35853 5.39332 5.42653 5.56281 5.57627 5.62205 5.83341 5.83776 5.93171 5.95060 6.05958 6.21502 6.22370 6.31277 6.37876 6.51299 6.56462 6.63642 6.81569 6.90228 7.09548 7.43155 7.71852 7.72354 8.08342 8.66581 9.12115 9.98842 10.14219 11.29881 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.004561 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.309543 B = 6138.067631 C = 6768.355004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.225 3.775 3 N -0.526 5.526 4 C 0.331 3.669 5 N -0.541 5.541 6 C 0.398 3.602 7 O -0.468 6.468 8 C -0.239 4.239 9 C 0.575 3.425 10 O -0.533 6.533 11 N -0.590 5.590 12 C 0.117 3.883 13 C -0.131 4.131 14 C 0.203 3.797 15 C -0.149 4.149 16 N -0.728 5.728 17 C -0.325 4.325 18 H 0.064 0.936 19 C -0.042 4.042 20 N -0.942 5.942 21 Si 1.074 2.926 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.297 1.297 25 C -0.131 4.131 26 C 0.117 3.883 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.206 0.794 31 H 0.415 0.585 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.367 0.633 40 H 0.254 0.746 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 12.770 8.115 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 N -0.242 5.242 4 C 0.044 3.956 5 N -0.266 5.266 6 C 0.210 3.790 7 O -0.276 6.276 8 C -0.248 4.248 9 C 0.360 3.640 10 O -0.410 6.410 11 N -0.322 5.322 12 C -0.005 4.005 13 C -0.170 4.170 14 C 0.112 3.888 15 C -0.208 4.208 16 N -0.371 5.371 17 C -0.456 4.456 18 H 0.082 0.918 19 C -0.240 4.240 20 N -0.588 5.588 21 Si 0.905 3.095 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.224 1.224 25 C -0.172 4.172 26 C -0.005 4.005 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.222 0.778 31 H 0.276 0.724 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.060 12.889 7.910 15.263 hybrid contribution -1.077 -0.436 0.666 1.339 sum -3.138 12.453 8.575 15.442 Atomic orbital electron populations 1.20922 0.87011 1.04724 1.04423 1.21775 0.97728 0.85951 0.86661 1.68282 1.10212 1.29304 1.16386 1.24955 0.86252 0.96123 0.88281 1.68062 1.42612 0.98647 1.17237 1.19379 0.85559 0.85998 0.88064 1.84653 1.72476 1.35841 1.34661 1.21717 0.95182 0.97001 1.10872 1.17569 0.78897 0.83450 0.84093 1.90793 1.54730 1.64739 1.30725 1.48107 1.56573 1.21916 1.05558 1.21626 0.93716 0.84064 1.01102 1.22124 0.96770 1.02106 0.95959 1.19461 0.89811 0.89407 0.90156 1.22189 0.97368 1.00513 1.00730 1.42510 1.51279 1.25607 1.17732 1.19890 1.23708 1.08456 0.93529 0.91771 1.25643 0.97959 0.94999 1.05415 1.70904 1.46610 1.26995 1.14252 0.83312 0.76087 0.75185 0.74886 1.21130 1.22363 1.22413 1.22272 0.95939 0.99173 0.99797 1.21705 0.99248 0.96719 0.82839 0.88835 0.88937 0.89793 0.77769 0.72350 0.89464 0.90588 0.91635 0.90596 0.93184 0.94484 0.92428 0.79902 0.93427 0.90432 0.93160 0.92363 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.85 36.01 0.35 -0.80 16 2 C 0.22 2.82 6.71 -81.85 -0.55 2.28 16 3 N -0.53 -6.25 10.36 -10.52 -0.11 -6.36 16 4 C 0.33 3.62 12.27 -92.09 -1.13 2.49 16 5 N -0.54 -7.10 10.45 -14.32 -0.15 -7.25 16 6 C 0.40 5.63 7.85 -16.18 -0.13 5.50 16 7 O -0.47 -6.41 13.10 -17.54 -0.23 -6.64 16 8 C -0.24 -3.39 3.68 -104.56 -0.38 -3.77 16 9 C 0.57 9.08 5.40 -12.47 -0.07 9.01 16 10 O -0.53 -10.05 16.52 5.29 0.09 -9.96 16 11 N -0.59 -8.82 2.97 -174.02 -0.52 -9.34 16 12 C 0.12 1.78 6.16 -3.71 -0.02 1.76 16 13 C -0.13 -1.91 4.96 -26.61 -0.13 -2.04 16 14 C 0.20 3.41 0.74 -131.78 -0.10 3.32 16 15 C -0.15 -2.44 8.44 37.16 0.31 -2.13 16 16 N -0.73 -15.39 4.14 -47.19 -0.20 -15.58 16 17 C -0.32 -7.93 8.68 -15.06 -0.13 -8.06 16 18 H 0.06 1.56 6.70 -52.49 -0.35 1.21 16 19 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 20 N -0.94 -26.98 13.70 55.49 0.76 -26.22 16 21 Si 1.07 24.27 29.92 -169.99 -5.09 19.19 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.30 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.13 -2.02 4.70 -26.63 -0.13 -2.14 16 26 C 0.12 1.76 6.08 -3.74 -0.02 1.74 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.91 7.18 -51.93 -0.37 0.53 16 30 H 0.21 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.42 4.08 9.06 45.56 0.41 4.49 16 32 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 33 H 0.08 1.27 6.94 -51.93 -0.36 0.91 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 1.03 7.27 -51.93 -0.38 0.66 16 39 H 0.37 8.25 5.29 -40.82 -0.22 8.04 16 40 H 0.25 7.16 6.77 -40.82 -0.28 6.88 16 41 H 0.08 1.30 7.31 -51.93 -0.38 0.92 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.80 6.22 -51.93 -0.32 0.48 16 44 H 0.09 1.61 7.75 -51.93 -0.40 1.21 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -31.84 356.02 -7.48 -39.31 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.19 Total: 11.55 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.22 Total: 5.92 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.21 Total: -64.75 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.14 Total: -16.60 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.09 Total: 19.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.84 -7.48 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755131763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.759 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds