Wall clock time and date at job start Tue Mar 31 2020 13:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32219 * 120.51548 * 2 1 4 4 C 1.31903 * 121.14539 * 180.29238 * 3 2 1 5 5 N 1.31756 * 122.19512 * 359.72050 * 4 3 2 6 6 C 1.32749 * 120.87148 * 0.02562 * 5 4 3 7 7 O 1.35281 * 120.61591 * 179.97438 * 6 5 4 8 8 C 1.39773 * 120.50556 * 179.76376 * 2 1 3 9 9 C 1.47535 * 120.98148 * 359.97438 * 8 2 1 10 10 O 1.21582 * 119.99607 * 269.72065 * 9 8 2 11 11 N 1.34771 * 119.99868 * 89.72125 * 9 8 2 12 12 C 1.46932 * 120.62744 * 180.02562 * 11 9 8 13 13 C 1.53192 * 108.77844 * 126.40951 * 12 11 9 14 14 C 1.53045 * 109.30943 * 54.63390 * 13 12 11 15 15 C 1.53003 * 109.45779 * 178.62811 * 14 13 12 16 16 N 1.46490 * 109.46384 * 58.65283 * 14 13 12 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.53044 * 109.52582 * 298.63661 * 14 13 12 26 26 C 1.46920 * 120.63299 * 0.02562 * 11 9 8 27 27 H 1.08998 * 109.47015 * 270.24221 * 1 2 3 28 28 H 1.09003 * 109.47160 * 30.23566 * 1 2 3 29 29 H 1.08997 * 109.47400 * 150.24178 * 1 2 3 30 30 H 1.08000 * 118.90222 * 179.70335 * 4 3 2 31 31 H 0.96696 * 114.00134 * 270.02425 * 7 6 5 32 32 H 1.08996 * 109.58846 * 6.61888 * 12 11 9 33 33 H 1.09003 * 109.57689 * 246.19391 * 12 11 9 34 34 H 1.08995 * 109.49437 * 294.68286 * 13 12 11 35 35 H 1.08996 * 109.52274 * 174.59662 * 13 12 11 36 36 H 1.08997 * 109.46965 * 300.02851 * 15 14 13 37 37 H 1.09002 * 109.46920 * 60.02578 * 15 14 13 38 38 H 1.08994 * 109.46997 * 180.02562 * 15 14 13 39 39 H 0.97000 * 120.00577 * 359.97352 * 16 14 13 40 40 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 41 41 H 1.09000 * 109.49970 * 181.31217 * 25 14 13 42 42 H 1.09001 * 109.50257 * 301.41366 * 25 14 13 43 43 H 1.08998 * 109.58779 * 353.38124 * 26 11 9 44 44 H 1.09004 * 109.58787 * 113.65837 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1391 0.0000 4 6 3.4973 1.1536 -0.0058 5 7 4.2115 0.0464 -0.0063 6 6 3.6233 -1.1437 -0.0016 7 8 4.3617 -2.2772 -0.0027 8 6 2.2165 -1.2042 0.0050 9 6 1.5122 -2.5006 0.0109 10 8 1.2270 -3.0326 1.0663 11 7 1.1851 -3.0951 -1.1536 12 6 0.4832 -4.3859 -1.1638 13 6 -0.7771 -4.2550 -2.0247 14 6 -0.3906 -3.7387 -3.4126 15 6 -1.6427 -3.6392 -4.2863 16 7 0.5628 -4.6640 -4.0296 17 6 1.0529 -4.4077 -5.2823 18 1 0.7369 -3.5232 -5.8153 19 6 1.9559 -5.2848 -5.8673 20 7 2.3407 -6.3631 -5.2179 21 14 2.6250 -4.9347 -7.5758 22 1 3.5640 -6.0153 -7.9707 23 1 1.5014 -4.8773 -8.5452 24 1 3.3409 -3.6338 -7.5702 25 6 0.2519 -2.3557 -3.2832 26 6 1.5236 -2.4648 -2.4368 27 1 -0.3633 0.0043 1.0276 28 1 -0.3634 0.8879 -0.5175 29 1 -0.3634 -0.8921 -0.5100 30 1 4.0088 2.1047 -0.0104 31 1 4.5729 -2.6082 -0.8864 32 1 0.2039 -4.6580 -0.1460 33 1 1.1346 -5.1525 -1.5836 34 1 -1.4673 -3.5543 -1.5550 35 1 -1.2563 -5.2294 -2.1195 36 1 -2.1003 -4.6241 -4.3789 37 1 -2.3522 -2.9506 -3.8273 38 1 -1.3676 -3.2719 -5.2749 39 1 0.8470 -5.4583 -3.5509 40 1 1.9935 -6.5447 -4.3306 41 1 0.5058 -1.9783 -4.2738 42 1 -0.4480 -1.6729 -2.8016 43 1 1.9307 -1.4695 -2.2590 44 1 2.2617 -3.0734 -2.9594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755131763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:18 Heat of formation + Delta-G solvation = -32.363899 kcal Electronic energy + Delta-G solvation = -28675.367520 eV Core-core repulsion = 24820.766663 eV Total energy + Delta-G solvation = -3854.600857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70171 -41.11972 -39.35073 -38.93844 -36.28616 -35.39673 -34.42244 -33.26184 -32.07590 -30.62552 -29.90755 -29.09185 -26.51501 -25.65860 -24.41181 -24.14506 -23.91901 -21.56907 -20.16233 -20.04851 -19.29353 -18.96304 -18.54617 -17.64314 -17.23680 -16.82825 -16.35512 -15.90852 -15.76601 -15.41590 -15.37716 -15.19735 -15.06595 -14.54087 -14.36006 -14.18533 -13.94638 -13.78457 -13.69353 -13.26344 -13.16987 -12.82525 -12.75589 -12.60830 -12.50742 -12.29099 -12.18945 -11.93008 -11.76538 -11.53167 -11.48358 -11.15967 -10.95317 -10.86070 -10.65007 -10.53699 -9.81211 -8.97973 -8.22867 -5.17286 -0.59989 -0.32785 1.20189 1.61455 1.68930 1.75099 1.84498 2.09437 2.40143 2.76558 2.84852 3.06571 3.16520 3.51770 3.66489 3.72203 3.79837 3.86875 4.00791 4.07738 4.12774 4.18879 4.30672 4.48432 4.53127 4.54522 4.61331 4.67929 4.78671 4.85096 4.92458 4.96303 5.01458 5.06623 5.12578 5.20733 5.26409 5.49581 5.56180 5.60437 5.77377 6.17637 6.19477 6.63323 6.79467 6.84103 7.22026 8.13245 8.25525 9.28406 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.004561 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.309543 B = 6138.067631 C = 6768.355004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.228 3.772 3 N -0.527 5.527 4 C 0.337 3.663 5 N -0.555 5.555 6 C 0.389 3.611 7 O -0.483 6.483 8 C -0.261 4.261 9 C 0.583 3.417 10 O -0.567 6.567 11 N -0.583 5.583 12 C 0.119 3.881 13 C -0.121 4.121 14 C 0.193 3.807 15 C -0.143 4.143 16 N -0.735 5.735 17 C -0.297 4.297 18 H 0.068 0.932 19 C -0.105 4.105 20 N -0.983 5.983 21 Si 1.114 2.886 22 H -0.303 1.303 23 H -0.284 1.284 24 H -0.280 1.280 25 C -0.125 4.125 26 C 0.129 3.871 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.427 0.573 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.358 0.642 40 H 0.243 0.757 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 15.615 8.290 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 N -0.243 5.243 4 C 0.051 3.949 5 N -0.281 5.281 6 C 0.202 3.798 7 O -0.294 6.294 8 C -0.270 4.270 9 C 0.369 3.631 10 O -0.446 6.446 11 N -0.314 5.314 12 C -0.003 4.003 13 C -0.159 4.159 14 C 0.104 3.896 15 C -0.202 4.202 16 N -0.377 5.377 17 C -0.429 4.429 18 H 0.086 0.914 19 C -0.296 4.296 20 N -0.633 5.633 21 Si 0.942 3.058 22 H -0.230 1.230 23 H -0.211 1.211 24 H -0.206 1.206 25 C -0.165 4.165 26 C 0.007 3.993 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.262 0.738 31 H 0.290 0.710 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.190 0.810 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.317 15.789 8.075 18.042 hybrid contribution -0.735 -1.221 0.678 1.579 sum -4.052 14.568 8.753 17.472 Atomic orbital electron populations 1.21014 0.85329 1.05442 1.05195 1.22170 0.98869 0.85464 0.85311 1.68420 1.10575 1.28643 1.16702 1.25844 0.86204 0.96900 0.85928 1.68158 1.42971 0.98763 1.18173 1.19557 0.85720 0.86406 0.88141 1.84608 1.72589 1.36221 1.35941 1.21629 0.95214 0.96699 1.13458 1.17738 0.78135 0.83755 0.83446 1.90770 1.56175 1.65882 1.31823 1.48057 1.56219 1.21622 1.05508 1.21546 0.93772 0.83839 1.01172 1.22050 0.96617 1.02854 0.94364 1.19789 0.89235 0.89411 0.91205 1.22109 0.97531 1.00721 0.99820 1.42683 1.52003 1.26115 1.16939 1.20118 1.21432 1.07209 0.94138 0.91432 1.26690 0.99567 0.95283 1.08072 1.70997 1.48882 1.29001 1.14383 0.82757 0.75710 0.75086 0.72244 1.22999 1.21077 1.20635 1.22195 0.96403 0.98471 0.99450 1.21515 0.98508 0.96850 0.82449 0.87985 0.86869 0.90259 0.73781 0.70964 0.89294 0.92716 0.89085 0.90434 0.94268 0.91056 0.94228 0.80963 0.94628 0.91705 0.90072 0.90646 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.85 71.24 0.70 -1.25 16 2 C 0.23 5.18 6.71 42.87 0.29 5.47 16 3 N -0.53 -10.98 10.36 -187.20 -1.94 -12.92 16 4 C 0.34 6.41 12.27 180.86 2.22 8.63 16 5 N -0.56 -13.64 10.45 -312.04 -3.26 -16.91 16 6 C 0.39 10.69 7.85 85.18 0.67 11.36 16 7 O -0.48 -13.30 13.10 -85.66 -1.12 -14.42 16 8 C -0.26 -7.08 3.68 -19.82 -0.07 -7.15 16 9 C 0.58 17.97 5.40 86.70 0.47 18.44 16 10 O -0.57 -21.22 16.52 -3.97 -0.07 -21.28 16 11 N -0.58 -17.01 2.97 -822.76 -2.45 -19.46 16 12 C 0.12 3.59 6.16 86.36 0.53 4.13 16 13 C -0.12 -3.30 4.96 30.67 0.15 -3.15 16 14 C 0.19 6.20 0.74 3.64 0.00 6.20 16 15 C -0.14 -4.37 8.44 71.98 0.61 -3.76 16 16 N -0.73 -31.18 4.14 -303.23 -1.25 -32.44 16 17 C -0.30 -14.49 8.68 84.03 0.73 -13.76 16 18 H 0.07 3.23 6.70 -2.91 -0.02 3.21 16 19 C -0.10 -5.60 5.50 84.86 0.47 -5.13 16 20 N -0.98 -58.00 13.70 21.65 0.30 -57.71 16 21 Si 1.11 49.34 29.92 68.60 2.05 51.39 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 25 C -0.13 -3.56 4.70 30.66 0.14 -3.42 16 26 C 0.13 3.74 6.08 86.35 0.52 4.27 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.45 7.18 -2.39 -0.02 1.43 16 30 H 0.25 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.43 8.64 9.06 -74.06 -0.67 7.97 16 32 H 0.09 2.68 7.00 -2.39 -0.02 2.67 16 33 H 0.05 1.89 6.94 -2.39 -0.02 1.88 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.34 7.27 -2.39 -0.02 1.32 16 39 H 0.36 16.55 5.29 -92.71 -0.49 16.06 16 40 H 0.24 14.27 6.77 -92.71 -0.63 13.64 16 41 H 0.06 2.04 7.31 -2.39 -0.02 2.03 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 1.95 6.22 -2.39 -0.01 1.93 16 44 H 0.06 2.10 7.75 -2.38 -0.02 2.09 16 Total: -1.00 -69.48 356.02 -0.27 -69.76 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.03 Total: 33.10 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 7.43 Total: 20.88 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -8.60 Total: -139.42 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.19 Total: -35.71 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Total: -69.48 -0.27 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755131763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.392 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds